Clone Sequence Records
BO16824.3prime Sequence
470 bp (470 high quality bases) assembled on 2006-10-13
> BO16824.3prime
ATGGTCTAGAAAGCTTGCTAGGGGAACATTAACCGTGGTCCAGGCCTGTT
TGAAGTTCTTCTTCTGCGAGTGCTGCTTCTTTCTTAGACGCTTGGCGGTC
TTCTTCTTCTTGAACCACGCAGGATAATTGCCGTACTGATCTTTGAGGGT
CTTGCTGTTGAAAATGTGCTCCACGCCCGTGTTCTCGTTGGTCACCTTGA
CTTTCTCGCCCTTCTCCAGACTCTCCTGGTGCTCGTAGATCAATTCCTGC
TCCTCCTTGGATTTGGCCTCCCTTTTGAGCTCCTTGGCGGTCTTAATTTC
GACCACATCGCTTATATCCTTCATGATCTCATTTCCATCGGCATCTAGGA
GTCCCAGAGTTTTCTTCAGTCGAATTAACTCCTTGGCTTCGTACCGCGCC
TTCTTTATCTTATTCATTTCATCACGACGCTTTCTCGAGCGATTGTTTCT
GCCCATGTCGACTGATAACT
BO16824.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15019-PA | 441 | CG15019-RA | 1..438 | 456..19 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15019-RB | 764 | CG15019-RB | 86..527 | 460..19 | 2195 | 99.8 | Minus |
| CG15019-RA | 677 | CG15019-RA | 86..527 | 460..19 | 2195 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4405364..4405616 | 19..271 | 1265 | 100 | Plus |
| 3L | 28110227 | 3L | 4405784..4405974 | 270..460 | 940 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:44:45 has no hits.
BO16824.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:15 Download gff for
BO16824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-PA | 1..441 | 15..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:32 Download gff for
BO16824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RA | 86..530 | 15..460 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:35 Download gff for
BO16824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RA | 86..530 | 15..460 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:35 Download gff for
BO16824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4405360..4405615 | 15..270 | 99 | <- | Plus |
| 3L | 4405785..4405974 | 271..460 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:32 Download gff for
BO16824.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4405785..4405974 | 271..460 | 99 | | Plus |
| arm_3L | 4405360..4405615 | 15..270 | 99 | <- | Plus |
BO16824.5prime Sequence
470 bp (470 high quality bases) assembled on 2006-10-13
> BO16824.5prime
GAAGTTATCAGTCGACATGGGCAGAAACAATCGCTCGAGAAAGCGTCGTG
ATGAAATGAATAAGATAAAGAAGGCGCGGTACGAAGCCAAGGAGTTAATT
CGACTGAAGAAAACTCTGGGACTCCTAGATGCCGATGGAAATGAGATCAT
GAAGGATATAAGCGATGTGGTCGAAATTAAGACCGCCAAGGAGCTCAAAA
GGGAGGCCAAATCCAAGGAGGAGCAGGAATTGATCTACGAGCACCAGGAG
AGTCTGGAGAAGGGCGAGAAAGTCAAGGTGACCAACGAGAACACGGGCGT
GGAGCACATTTTCAACAGCAAGACCCTCAAAGATCAGTACGGCAATTATC
CTGCGTGGTTCAAGAAGAAGAAGACCGCCAAGCGTCTAAGAAAGAAGCAG
CACTCGCAGAAGAAGAACTTCAAACAGGCCTGGACCACGGTTAATGTTCC
CCTAGCAAGCTTTCTAGACC
BO16824.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15019-PA | 441 | CG15019-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15019-RB | 764 | CG15019-RB | 86..527 | 13..454 | 2195 | 99.8 | Plus |
| CG15019-RA | 677 | CG15019-RA | 86..527 | 13..454 | 2195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:51:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4405364..4405616 | 454..202 | 1265 | 100 | Minus |
| 3L | 28110227 | 3L | 4405784..4405974 | 203..13 | 940 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:51:52 has no hits.
BO16824.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:16 Download gff for
BO16824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-PA | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:33 Download gff for
BO16824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RA | 86..530 | 13..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:47 Download gff for
BO16824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RA | 86..530 | 13..458 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:47 Download gff for
BO16824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4405360..4405615 | 203..458 | 99 | <- | Minus |
| 3L | 4405785..4405974 | 13..202 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:33 Download gff for
BO16824.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4405360..4405615 | 203..458 | 99 | <- | Minus |
| arm_3L | 4405785..4405974 | 13..202 | 99 | | Minus |
BO16824.complete Sequence
472 bp assembled on 2006-10-11
GenBank Submission: FJ633932
> BO16824.complete
GAAGTTATCAGTCGACATGGGCAGAAACAATCGCTCGAGAAAGCGTCGTG
ATGAAATGAATAAGATAAAGAAGGCGCGGTACGAAGCCAAGGAGTTAATT
CGACTGAAGAAAACTCTGGGACTCCTAGATGCCGATGGAAATGAGATCAT
GAAGGATATAAGCGATGTGGTCGAAATTAAGACCGCCAAGGAGCTCAAAA
GGGAGGCCAAATCCAAGGAGGAGCAGGAATTGATCTACGAGCACCAGGAG
AGTCTGGAGAAGGGCGAGAAAGTCAAGGTGACCAACGAGAACACGGGCGT
GGAGCACATTTTCAACAGCAAGACCCTCAAAGATCAGTACGGCAATTATC
CTGCGTGGTTCAAGAAGAAGAAGACCGCCAAGCGTCTAAGAAAGAAGCAG
CACTCGCAGAAGAAGAACTTCAAACAGGCCTGGACCACGGTTAATGTTCC
CCTAGCAAGCTTTCTAGACCAT
BO16824.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:06:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15019-RB | 441 | CG15019-PB | 1..438 | 17..454 | 2190 | 100 | Plus |
| CG15019-RA | 441 | CG15019-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15019-RB | 764 | CG15019-RB | 86..527 | 13..454 | 2195 | 99.8 | Plus |
| CG15019-RA | 677 | CG15019-RA | 86..527 | 13..454 | 2195 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4405364..4405616 | 454..202 | 1265 | 100 | Minus |
| 3L | 28110227 | 3L | 4405784..4405974 | 203..13 | 940 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:06:41 has no hits.
BO16824.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:41 Download gff for
BO16824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RB | 1..441 | 17..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:20 Download gff for
BO16824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RB | 86..530 | 13..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:39:13 Download gff for
BO16824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RA | 90..527 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:41 Download gff for
BO16824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RB | 86..530 | 13..458 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:44:43 Download gff for
BO16824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15019-RA | 90..527 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:44:43 Download gff for
BO16824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4405362..4405615 | 203..456 | 99 | <- | Minus |
| 3L | 4405785..4405970 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:39:13 Download gff for
BO16824.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4405785..4405970 | 17..202 | 100 | | Minus |
| arm_3L | 4405362..4405615 | 203..456 | 99 | <- | Minus |
BO16824.pep Sequence
Translation from 16 to 472
> BO16824.pep
MGRNNRSRKRRDEMNKIKKARYEAKELIRLKKTLGLLDADGNEIMKDISD
VVEIKTAKELKREAKSKEEQELIYEHQESLEKGEKVKVTNENTGVEHIFN
SKTLKDQYGNYPAWFKKKKTAKRLRKKQHSQKKNFKQAWTTVNVPLASFL
DH
BO16824.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15019-PB | 146 | CG15019-PB | 1..146 | 1..146 | 749 | 100 | Plus |
| CG15019-PA | 146 | CG15019-PA | 1..146 | 1..146 | 749 | 100 | Plus |
