Clone Sequence Records
BO16827.3prime Sequence
500 bp (500 high quality bases) assembled on 2006-10-13
> BO16827.3prime
ATGGTCTAGAAAGCTTGCCATGATCGTGCACAGCGAGCGTTCCTCTCCTT
GCGGCGCCGCCTGTCCAGAGAGCTCTTTTTGCTTAAGCTCAAGATAGGTA
TTCTCGTTTCGCTTCTCCATCCAGTCCGGCAGAGGAGCAGCCCAATCCAG
CGGTGGCTTCTTACGCTTCTGCCAAGTGTCGTTGGCAAAGTGGGCGCGCA
GGCGGATCCTTCGGCGCTCCTCCTCGCTTTTAATCACCGCTTTGCCGGCA
GCCACATCGTTCCCGTTGGACTGCTGATATCGTTCGCAGTTACGGTAATC
AGTTAGCCATTGGGAGCAATCTGTGTCCTTGCCAAATATAAAGTACTGGT
GGAAGCGCGCCTTAAAACTCGTGCAGTCGTCGTACTCCTCCTTGTACAGA
TGACAGGGTCGGATTGCCCATGCGTCATCTAGTGATTCCTTTGATTTGTC
CGATTTTGAGTCAGCATTATCCGATTTTGTGGCCATGTCGACTGATAACT
BO16827.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-PA | 471 | CG15908-RA | 1..468 | 486..19 | 2340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:52:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-RA | 537 | CG15908-RA | 36..503 | 486..19 | 2340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6668309..6668704 | 414..19 | 1980 | 100 | Minus |
2R | 25286936 | 2R | 6668185..6668256 | 486..415 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:52:06 has no hits.
BO16827.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:20 Download gff for
BO16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-PA | 1..471 | 16..486 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:35 Download gff for
BO16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 23..508 | 14..498 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:48 Download gff for
BO16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 23..508 | 14..498 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:48 Download gff for
BO16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6668172..6668256 | 415..498 | 94 | -> | Minus |
2R | 6668309..6668709 | 14..414 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:35 Download gff for
BO16827.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2555677..2555761 | 415..498 | 94 | -> | Minus |
arm_2R | 2555814..2556214 | 14..414 | 99 | | Minus |
BO16827.5prime Sequence
500 bp (500 high quality bases) assembled on 2006-10-13
> BO16827.5prime
GAAGTTATCAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAAT
CGGACAAATCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGT
CATCTGTACAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTT
CCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAA
CTGATTACCGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTG
GCTGCCGGCAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCG
CCTGCGCGCCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCAC
CGCTGGATTGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAG
AATACCTATCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCC
GCAAGGAGAGGAACGCTCGCTGTGCACGATCATGGCAAGCTTTCTAGACC
BO16827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-PA | 471 | CG15908-RA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-RA | 537 | CG15908-RA | 36..503 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6668309..6668704 | 89..484 | 1980 | 100 | Plus |
2R | 25286936 | 2R | 6668185..6668256 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:30:54 has no hits.
BO16827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:23 Download gff for
BO16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-PA | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:23 Download gff for
BO16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 23..508 | 5..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:12 Download gff for
BO16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 23..508 | 5..489 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:12 Download gff for
BO16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6668172..6668256 | 5..88 | 94 | -> | Plus |
2R | 6668309..6668709 | 89..489 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:23 Download gff for
BO16827.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2555677..2555761 | 5..88 | 94 | -> | Plus |
arm_2R | 2555814..2556214 | 89..489 | 99 | | Plus |
BO16827.complete Sequence
502 bp assembled on 2006-10-11
GenBank Submission: FJ633934
> BO16827.complete
GAAGTTATCAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAAT
CGGACAAATCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGT
CATCTGTACAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTT
CCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAA
CTGATTACCGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTG
GCTGCCGGCAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCG
CCTGCGCGCCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCAC
CGCTGGATTGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAG
AATACCTATCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCC
GCAAGGAGAGGAACGCTCGCTGTGCACGATCATGGCAAGCTTTCTAGACC
AT
BO16827.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-RA | 471 | CG15908-PA | 1..468 | 17..484 | 2340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-RA | 537 | CG15908-RA | 36..503 | 17..484 | 2340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6668309..6668704 | 89..484 | 1980 | 100 | Plus |
2R | 25286936 | 2R | 6668185..6668256 | 17..88 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:25:18 has no hits.
BO16827.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:14 Download gff for
BO16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RB | 1..471 | 17..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:14 Download gff for
BO16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RD | 23..508 | 5..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:38 Download gff for
BO16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 36..503 | 17..486 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:15 Download gff for
BO16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9410-RD | 23..508 | 5..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:17 Download gff for
BO16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15908-RA | 36..503 | 17..486 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:17 Download gff for
BO16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6668185..6668256 | 17..88 | 100 | -> | Plus |
2R | 6668309..6668704 | 89..486 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:38 Download gff for
BO16827.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2555690..2555761 | 17..88 | 100 | -> | Plus |
arm_2R | 2555814..2556209 | 89..486 | 99 | | Plus |
BO16827.pep Sequence
Translation from 16 to 502
> BO16827.pep
MATKSDNADSKSDKSKESLDDAWAIRPCHLYKEEYDDCTSFKARFHQYFI
FGKDTDCSQWLTDYRNCERYQQSNGNDVAAGKAVIKSEEERRRIRLRAHF
ANDTWQKRKKPPLDWAAPLPDWMEKRNENTYLELKQKELSGQAAPQGEER
SLCTIMASFLDH
BO16827.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15908-PA | 156 | CG15908-PA | 1..156 | 1..156 | 852 | 100 | Plus |