Clone BO16827 Report

Search the DGRC for BO16827

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG15908-RA
Protein status:BO16827.pep: validated full length
Sequenced Size:502

Clone Sequence Records

BO16827.3prime Sequence

500 bp (500 high quality bases) assembled on 2006-10-13

> BO16827.3prime
ATGGTCTAGAAAGCTTGCCATGATCGTGCACAGCGAGCGTTCCTCTCCTT
GCGGCGCCGCCTGTCCAGAGAGCTCTTTTTGCTTAAGCTCAAGATAGGTA
TTCTCGTTTCGCTTCTCCATCCAGTCCGGCAGAGGAGCAGCCCAATCCAG
CGGTGGCTTCTTACGCTTCTGCCAAGTGTCGTTGGCAAAGTGGGCGCGCA
GGCGGATCCTTCGGCGCTCCTCCTCGCTTTTAATCACCGCTTTGCCGGCA
GCCACATCGTTCCCGTTGGACTGCTGATATCGTTCGCAGTTACGGTAATC
AGTTAGCCATTGGGAGCAATCTGTGTCCTTGCCAAATATAAAGTACTGGT
GGAAGCGCGCCTTAAAACTCGTGCAGTCGTCGTACTCCTCCTTGTACAGA
TGACAGGGTCGGATTGCCCATGCGTCATCTAGTGATTCCTTTGATTTGTC
CGATTTTGAGTCAGCATTATCCGATTTTGTGGCCATGTCGACTGATAACT

BO16827.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-PA 471 CG15908-RA 1..468 486..19 2340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-RA 537 CG15908-RA 36..503 486..19 2340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6668309..6668704 414..19 1980 100 Minus
2R 25286936 2R 6668185..6668256 486..415 360 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:52:06 has no hits.

BO16827.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:20 Download gff for BO16827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-PA 1..471 16..486 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:35 Download gff for BO16827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 23..508 14..498 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:48 Download gff for BO16827.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 23..508 14..498 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:48 Download gff for BO16827.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6668172..6668256 415..498 94 -> Minus
2R 6668309..6668709 14..414 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:35 Download gff for BO16827.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2555677..2555761 415..498 94 -> Minus
arm_2R 2555814..2556214 14..414 99   Minus

BO16827.5prime Sequence

500 bp (500 high quality bases) assembled on 2006-10-13

> BO16827.5prime
GAAGTTATCAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAAT
CGGACAAATCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGT
CATCTGTACAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTT
CCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAA
CTGATTACCGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTG
GCTGCCGGCAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCG
CCTGCGCGCCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCAC
CGCTGGATTGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAG
AATACCTATCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCC
GCAAGGAGAGGAACGCTCGCTGTGCACGATCATGGCAAGCTTTCTAGACC

BO16827.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-PA 471 CG15908-RA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-RA 537 CG15908-RA 36..503 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6668309..6668704 89..484 1980 100 Plus
2R 25286936 2R 6668185..6668256 17..88 360 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:30:54 has no hits.

BO16827.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:23 Download gff for BO16827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-PA 1..471 17..487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:23 Download gff for BO16827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 23..508 5..489 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:12 Download gff for BO16827.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 23..508 5..489 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:12 Download gff for BO16827.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6668172..6668256 5..88 94 -> Plus
2R 6668309..6668709 89..489 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:23 Download gff for BO16827.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2555677..2555761 5..88 94 -> Plus
arm_2R 2555814..2556214 89..489 99   Plus

BO16827.complete Sequence

502 bp assembled on 2006-10-11

GenBank Submission: FJ633934

> BO16827.complete
GAAGTTATCAGTCGACATGGCCACAAAATCGGATAATGCTGACTCAAAAT
CGGACAAATCAAAGGAATCACTAGATGACGCATGGGCAATCCGACCCTGT
CATCTGTACAAGGAGGAGTACGACGACTGCACGAGTTTTAAGGCGCGCTT
CCACCAGTACTTTATATTTGGCAAGGACACAGATTGCTCCCAATGGCTAA
CTGATTACCGTAACTGCGAACGATATCAGCAGTCCAACGGGAACGATGTG
GCTGCCGGCAAAGCGGTGATTAAAAGCGAGGAGGAGCGCCGAAGGATCCG
CCTGCGCGCCCACTTTGCCAACGACACTTGGCAGAAGCGTAAGAAGCCAC
CGCTGGATTGGGCTGCTCCTCTGCCGGACTGGATGGAGAAGCGAAACGAG
AATACCTATCTTGAGCTTAAGCAAAAAGAGCTCTCTGGACAGGCGGCGCC
GCAAGGAGAGGAACGCTCGCTGTGCACGATCATGGCAAGCTTTCTAGACC
AT

BO16827.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-RA 471 CG15908-PA 1..468 17..484 2340 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-RA 537 CG15908-RA 36..503 17..484 2340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6668309..6668704 89..484 1980 100 Plus
2R 25286936 2R 6668185..6668256 17..88 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:25:18 has no hits.

BO16827.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:14 Download gff for BO16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG15908-RB 1..471 17..487 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:14 Download gff for BO16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 23..508 5..489 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:38 Download gff for BO16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 36..503 17..486 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:15 Download gff for BO16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG9410-RD 23..508 5..489 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:17 Download gff for BO16827.complete
Subject Subject Range Query Range Percent Splice Strand
CG15908-RA 36..503 17..486 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:17 Download gff for BO16827.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6668185..6668256 17..88 100 -> Plus
2R 6668309..6668704 89..486 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:38 Download gff for BO16827.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2555690..2555761 17..88 100 -> Plus
arm_2R 2555814..2556209 89..486 99   Plus

BO16827.pep Sequence

Translation from 16 to 502

> BO16827.pep
MATKSDNADSKSDKSKESLDDAWAIRPCHLYKEEYDDCTSFKARFHQYFI
FGKDTDCSQWLTDYRNCERYQQSNGNDVAAGKAVIKSEEERRRIRLRAHF
ANDTWQKRKKPPLDWAAPLPDWMEKRNENTYLELKQKELSGQAAPQGEER
SLCTIMASFLDH

BO16827.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15908-PA 156 CG15908-PA 1..156 1..156 852 100 Plus