Clone Sequence Records
BO16831.3prime Sequence
185 bp (185 high quality bases) assembled on 2006-10-13
> BO16831.3prime
ATGGTCTAGAAAGCTTGCACAAGACGGTCCGCAGCTGCTGCAGCATCCGC
CCCCGCAGCAAGGTCCACATGGTCCACTATAGAATCCGCATCGTGGTCCA
AAACAACGGCCACTAAAGCAGGGGCTACAGCAAGGGTAGTAGCAAGTTCC
ACAGCAGGGCCCGCAACACATGTCGACTGATAACT
BO16831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-PA | 156 | CG30430-RA | 1..153 | 171..19 | 765 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:30:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-RB | 355 | CG30430-RB | 97..249 | 171..19 | 765 | 100 | Minus |
CG30430-RA | 498 | CG30430-RA | 124..276 | 171..19 | 765 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:30:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25129611..25129763 | 171..19 | 765 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:30:27 has no hits.
BO16831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:26 Download gff for
BO16831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-PA | 1..156 | 15..171 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:34:28 Download gff for
BO16831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 10..176 | 96 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:40:09 Download gff for
BO16831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 10..176 | 96 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:40:09 Download gff for
BO16831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25129606..25129769 | 10..176 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:34:28 Download gff for
BO16831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 21017129..21017292 | 10..176 | 96 | | Minus |
BO16831.5prime Sequence
185 bp (185 high quality bases) assembled on 2006-10-13
> BO16831.5prime
GAAGTTATCAGTCGACATGTGTTGCGGGCCCTGCTGTGGAACTTGCTACT
ACCCTTGCTGTAGCCCCTGCTTTAGTGGCCGTTGTTTTGGACCACGATGC
GGATTCTATAGTGGACCATGTGGACCTTGCTGCGGGGGCGGATGCTGCAG
CAGCTGCGGACCGTCTTGTGCAAGCTTTCTAGACC
BO16831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:39:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-PA | 156 | CG30430-RA | 1..153 | 17..169 | 765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-RB | 355 | CG30430-RB | 97..249 | 17..169 | 765 | 100 | Plus |
CG30430-RA | 498 | CG30430-RA | 124..276 | 17..169 | 765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:45:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25129611..25129763 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:45:14 has no hits.
BO16831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:27 Download gff for
BO16831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-PA | 1..156 | 17..173 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:55 Download gff for
BO16831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 12..178 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:58:51 Download gff for
BO16831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 12..178 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:58:51 Download gff for
BO16831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25129606..25129769 | 12..178 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:55 Download gff for
BO16831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 21017129..21017292 | 12..178 | 96 | | Plus |
BO16831.complete Sequence
187 bp assembled on 2007-12-19
GenBank Submission: FJ633935
> BO16831.complete
GAAGTTATCAGTCGACATGTGTTGCGGGCCCTGCTGTGGAACTTGCTACT
ACCCTTGCTGTAGCCCCTGCTTTAGTGGCCGTTGTTTTGGACCACGATGC
GGATTCTATAGTGGACCATGTGGACCTTGCTGCGGGGGCGGATGCTGCAG
CAGCTGCGGACCGTCTTGTGCAAGCTTTCTAGACCAT
BO16831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-RB | 156 | CG30430-PB | 1..153 | 17..169 | 765 | 100 | Plus |
CG30430-RA | 156 | CG30430-PA | 1..153 | 17..169 | 765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-RB | 355 | CG30430-RB | 97..249 | 17..169 | 765 | 100 | Plus |
CG30430-RA | 498 | CG30430-RA | 124..276 | 17..169 | 765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 25129611..25129763 | 17..169 | 765 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:35:35 has no hits.
BO16831.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:20 Download gff for
BO16831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 1..156 | 17..173 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-07-28 15:36:23 Download gff for
BO16831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 124..276 | 17..171 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:33 Download gff for
BO16831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 124..276 | 17..171 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:03:21 Download gff for
BO16831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 119..282 | 12..178 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:06 Download gff for
BO16831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30430-RA | 124..276 | 17..171 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:06 Download gff for
BO16831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 25129611..25129763 | 17..171 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:33 Download gff for
BO16831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 21017134..21017286 | 17..171 | 98 | | Plus |
BO16831.pep Sequence
Translation from 16 to 187
> BO16831.pep
MCCGPCCGTCYYPCCSPCFSGRCFGPRCGFYSGPCGPCCGGGCCSSCGPS
CASFLDH
BO16831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30430-PB | 51 | CG30430-PB | 1..51 | 1..51 | 351 | 100 | Plus |
CG30430-PA | 51 | CG30430-PA | 1..51 | 1..51 | 351 | 100 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 7..59 | 4..53 | 170 | 56.4 | Plus |
Mst84Dc-PB | 55 | CG17945-PB | 1..46 | 1..54 | 164 | 57.4 | Plus |
Mst84Dc-PA | 55 | CG17945-PA | 1..46 | 1..54 | 164 | 57.4 | Plus |
Mst84Dd-PA | 72 | CG17935-PA | 24..58 | 2..40 | 144 | 61.9 | Plus |