Clone Sequence Records
BO16832.3prime Sequence
455 bp (455 high quality bases) assembled on 2006-10-13
> BO16832.3prime
ATGGTCTAGAAAGCTTGCTATAAAATTAGCATTATACAGTTGCATGTCTC
CCGGGCCATCTTCGTCATCACTTTCGGAGTAATCATCGTATTCATCGACG
TCATCCTCATCAGACCACTCGATCATCATCTGCCCCGGGGGAGCATAGCC
CAAGCAACTGGCGTTGAGCGAACGGAAGCTTGCGTTCGAAACAAGGATAA
CCTTAGATTTGAAGGTAGTATGGTCGAGCGTCTCTATGGCGAGCTTGGCC
TCGCTCTCCCTAGCGAACTGGATAAACCCCTGGTTATTGGTGACCAGCGA
GCCAAGGATTTCGCCGAAGGGCAAGCAGAGGTAAGCCAGCTCCTGGCGGG
TGCATACCGGAAGGTTTCTCACAAGGATCCTGCTCTTCAGACCAGTCGGT
CCACTGGTGAGTTCAATTCCCGCGATATCACTTGCAGACATGTCGACTGA
TAACT
BO16832.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-PA | 426 | CG14628-RA | 1..423 | 441..19 | 2115 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-RA | 489 | CG14628-RA | 35..457 | 441..19 | 2115 | 100 | Minus |
fz3-RB | 2304 | CG16785-RB | 64..410 | 441..98 | 900 | 84.1 | Minus |
CG18823-RA | 667 | CG18823-RA | 88..306 | 400..182 | 495 | 82.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1145678..1146100 | 441..19 | 2115 | 100 | Minus |
X | 23542271 | X | 777797..778143 | 441..98 | 875 | 84.1 | Minus |
X | 23542271 | X | 21152371..21152711 | 101..441 | 550 | 77.4 | Plus |
X | 23542271 | X | 21163547..21163887 | 101..441 | 550 | 77.4 | Plus |
X | 23542271 | X | 990605..990823 | 400..182 | 495 | 81.7 | Minus |
U | 3151297 | U | 3102340..3102485 | 441..296 | 415 | 85.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:31:05 has no hits.
BO16832.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:28 Download gff for
BO16832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-PA | 1..426 | 15..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:25 Download gff for
BO16832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..460 | 15..441 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:11:38 Download gff for
BO16832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..460 | 15..441 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:11:38 Download gff for
BO16832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1145678..1146103 | 15..441 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:25 Download gff for
BO16832.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1039711..1040136 | 15..441 | 99 | | Minus |
BO16832.5prime Sequence
455 bp (455 high quality bases) assembled on 2006-10-13
> BO16832.5prime
GAAGTTATCAGTCGACATGTCTGCAAGTGATATCGCGGGAATTGAACTCA
CCAGTGGACCGACTGGTCTGAAGAGCAGGATCCTTGTGAGAAACCTTCCG
GTATGCACCCGCCAGGAGCTGGCTTACCTCTGCTTGCCCTTCGGCGAAAT
CCTTGGCTCGCTGGTCACCAATAACCAGGGGTTTATCCAGTTCGCTAGGG
AGAGCGAGGCCAAGCTCGCCATAGAGACGCTCGACCATACTACCTTCAAA
TCTAAGGTTATCCTTGTTTCGAACGCAAGCTTCCGTTCGCTCAACGCCAG
TTGCTTGGGCTATGCTCCCCCGGGGCAGATGATGATCGAGTGGTCTGATG
AGGATGACGTCGATGAATACGATGATTACTCCGAAAGTGATGACGAAGAT
GGCCCGGGAGACATGCAACTGTATAATGCTAATTTTATAGCAAGCTTTCT
AGACC
BO16832.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-PA | 426 | CG14628-RA | 1..423 | 17..439 | 2115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:57:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-RA | 489 | CG14628-RA | 35..457 | 17..439 | 2115 | 100 | Plus |
fz3-RB | 2304 | CG16785-RB | 64..410 | 17..360 | 900 | 84.1 | Plus |
CG18823-RA | 667 | CG18823-RA | 88..306 | 58..276 | 495 | 82.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1145678..1146100 | 17..439 | 2115 | 100 | Plus |
X | 23542271 | X | 777797..778143 | 17..360 | 875 | 84.1 | Plus |
X | 23542271 | X | 21152371..21152711 | 357..17 | 550 | 77.4 | Minus |
X | 23542271 | X | 21163547..21163887 | 357..17 | 550 | 77.4 | Minus |
X | 23542271 | X | 990605..990823 | 58..276 | 495 | 81.7 | Plus |
U | 3151297 | U | 3102340..3102485 | 17..162 | 415 | 85.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:57:03 has no hits.
BO16832.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:29 Download gff for
BO16832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-PA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:17 Download gff for
BO16832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..460 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:34:16 Download gff for
BO16832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..460 | 17..443 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:34:16 Download gff for
BO16832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1145678..1146103 | 17..443 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:17 Download gff for
BO16832.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1039711..1040136 | 17..443 | 99 | | Plus |
BO16832.complete Sequence
457 bp assembled on 2006-10-11
GenBank Submission: FJ633936
> BO16832.complete
GAAGTTATCAGTCGACATGTCTGCAAGTGATATCGCGGGAATTGAACTCA
CCAGTGGACCGACTGGTCTGAAGAGCAGGATCCTTGTGAGAAACCTTCCG
GTATGCACCCGCCAGGAGCTGGCTTACCTCTGCTTGCCCTTCGGCGAAAT
CCTTGGCTCGCTGGTCACCAATAACCAGGGGTTTATCCAGTTCGCTAGGG
AGAGCGAGGCCAAGCTCGCCATAGAGACGCTCGACCATACTACCTTCAAA
TCTAAGGTTATCCTTGTTTCGAACGCAAGCTTCCGTTCGCTCAACGCCAG
TTGCTTGGGCTATGCTCCCCCGGGGCAGATGATGATCGAGTGGTCTGATG
AGGATGACGTCGATGAATACGATGATTACTCCGAAAGTGATGACGAAGAT
GGCCCGGGAGACATGCAACTGTATAATGCTAATTTTATAGCAAGCTTTCT
AGACCAT
BO16832.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-RA | 426 | CG14628-PA | 1..423 | 17..439 | 2115 | 100 | Plus |
fz3-RB | 1941 | CG16785-PB | 1..347 | 17..360 | 875 | 84.1 | Plus |
CG18823-RA | 321 | CG18823-PA | 24..242 | 58..276 | 495 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-RA | 489 | CG14628-RA | 35..457 | 17..439 | 2115 | 100 | Plus |
fz3-RB | 2304 | CG16785-RB | 64..410 | 17..360 | 875 | 84.1 | Plus |
CG18823-RA | 667 | CG18823-RA | 88..306 | 58..276 | 495 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1145678..1146100 | 17..439 | 2115 | 100 | Plus |
X | 23542271 | X | 777797..778143 | 17..360 | 875 | 84.1 | Plus |
X | 23542271 | X | 21163547..21163887 | 357..17 | 550 | 77.4 | Minus |
X | 23542271 | X | 21152371..21152711 | 357..17 | 550 | 77.4 | Minus |
X | 23542271 | X | 990605..990823 | 58..276 | 495 | 81.7 | Plus |
U | 3151297 | U | 3102340..3102485 | 17..162 | 415 | 85.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:32:34 has no hits.
BO16832.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:25 Download gff for
BO16832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 1..426 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:55 Download gff for
BO16832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..460 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:17 Download gff for
BO16832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..457 | 17..441 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:26 Download gff for
BO16832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..460 | 17..443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:18 Download gff for
BO16832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14628-RA | 35..457 | 17..441 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:18 Download gff for
BO16832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1145678..1146100 | 17..441 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:17 Download gff for
BO16832.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1039711..1040133 | 17..441 | 99 | | Plus |
BO16832.pep Sequence
Translation from 16 to 457
> BO16832.pep
MSASDIAGIELTSGPTGLKSRILVRNLPVCTRQELAYLCLPFGEILGSLV
TNNQGFIQFARESEAKLAIETLDHTTFKSKVILVSNASFRSLNASCLGYA
PPGQMMIEWSDEDDVDEYDDYSESDDEDGPGDMQLYNANFIASFLDH
BO16832.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14628-PA | 141 | CG14628-PA | 1..141 | 1..141 | 729 | 100 | Plus |
fz3-PB | 646 | CG16785-PB | 1..137 | 1..129 | 439 | 68.6 | Plus |
CG18823-PA | 106 | CG18823-PA | 9..106 | 15..121 | 285 | 57 | Plus |
Neos-PB | 371 | CG8614-PB | 1..97 | 1..97 | 217 | 45.4 | Plus |
Neos-PA | 371 | CG8614-PA | 1..97 | 1..97 | 217 | 45.4 | Plus |