Clone BO16833 Report

Search the DGRC for BO16833

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG16986-RA
Protein status:BO16833.pep: validated full length
Sequenced Size:463

Clone Sequence Records

BO16833.3prime Sequence

461 bp (461 high quality bases) assembled on 2006-10-13

> BO16833.3prime
ATGGTCTAGAAAGCTTGCGTCAAATTTGATATACTTTAGATGTGTGCCCT
TGGCTATCACCAAGTCGTCCTTCTTGTGCTTCAGGGTGCAATCGATGAAG
GCAAGGTACTTGCCCACCTTGGACAGATTGGCCTGAATCACCACATCGTC
GCCCAGTTTGGCGCCGTTTAGAAAGTTTACACTAAGATCTACCGAAACTC
CGGGATGACATGGCTTGGACATTAGGGCGTAGGTGGTTATCAAGTCCACC
AGGGTCATGATATAACCGCCGTGCAAAAACTTGTACAAGTTCACATGATC
CTGGTCCACCTTTAGCTCAGCAGTGCAGGCTCCATCGCCACCGTCTACGA
TCTTGACCTTCTGTAGGTGACTTTCAAAGCCCGTTGACTTGTTGATAATC
TCGGTGATGTGTTTAGCGAATTCGAGTCCCTTCTTGCGAGTTCCCATGTC
GACTGATAACT

BO16833.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-PA 432 CG16986-RA 1..429 447..19 2145 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:52:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-RB 694 CG16986-RB 164..592 447..19 2145 100 Minus
CG16986-RA 769 CG16986-RA 164..592 447..19 2145 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2601018..2601359 360..19 1710 100 Minus
3L 28110227 3L 2600870..2600961 447..356 460 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:52:19 has no hits.

BO16833.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:30 Download gff for BO16833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-PA 1..432 18..447 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:38 Download gff for BO16833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..592 19..447 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:49 Download gff for BO16833.3prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..592 19..447 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:49 Download gff for BO16833.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2600870..2600959 358..447 100 -> Minus
3L 2601021..2601359 19..357 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:38 Download gff for BO16833.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2600870..2600959 358..447 100 -> Minus
arm_3L 2601021..2601359 19..357 100   Minus

BO16833.5prime Sequence

461 bp (461 high quality bases) assembled on 2006-10-13

> BO16833.5prime
GAAGTTATCAGTCGACATGGGAACTCGCAAGAAGGGACTCGAATTCGCTA
AACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTA
CAGAAGGTCAAGATCGTAGACGGTGGCGATGGAGCCTGCACTGCTGAGCT
AAAGGTGGACCAGGATCATGTGAACTTGTACAAGTTTTTGCACGGCGGTT
ATATCATGACCCTGGTGGACTTGATAACCACCTACGCCCTAATGTCCAAG
CCATGTCATCCCGGAGTTTCGGTAGATCTTAGTGTAAACTTTCTAAACGG
CGCCAAACTGGGCGACGATGTGGTGATTCAGGCCAATCTGTCCAAGGTGG
GCAAGTACCTTGCCTTCATCGATTGCACCCTGAAGCACAAGAAGGACGAC
TTGGTGATAGCCAAGGGCACACATCTAAAGTATATCAAATTTGACGCAAG
CTTTCTAGACC

BO16833.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-PA 432 CG16986-RA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-RB 694 CG16986-RB 164..592 17..445 2145 100 Plus
CG16986-RA 769 CG16986-RA 164..592 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2601018..2601359 104..445 1710 100 Plus
3L 28110227 3L 2600870..2600961 17..108 460 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:04:59 has no hits.

BO16833.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:31 Download gff for BO16833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-PA 1..432 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:20 Download gff for BO16833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..592 17..445 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:28 Download gff for BO16833.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..592 17..445 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:28 Download gff for BO16833.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2600870..2600959 17..106 100 -> Plus
3L 2601021..2601359 107..445 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:20 Download gff for BO16833.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2600870..2600959 17..106 100 -> Plus
arm_3L 2601021..2601359 107..445 100   Plus

BO16833.complete Sequence

463 bp assembled on 2006-10-11

GenBank Submission: FJ633937

> BO16833.complete
GAAGTTATCAGTCGACATGGGAACTCGCAAGAAGGGACTCGAATTCGCTA
AACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTA
CAGAAGGTCAAGATCGTAGACGGTGGCGATGGAGCCTGCACTGCTGAGCT
AAAGGTGGACCAGGATCATGTGAACTTGTACAAGTTTTTGCACGGCGGTT
ATATCATGACCCTGGTGGACTTGATAACCACCTACGCCCTAATGTCCAAG
CCATGTCATCCCGGAGTTTCGGTAGATCTTAGTGTAAACTTTCTAAACGG
CGCCAAACTGGGCGACGATGTGGTGATTCAGGCCAATCTGTCCAAGGTGG
GCAAGTACCTTGCCTTCATCGATTGCACCCTGAAGCACAAGAAGGACGAC
TTGGTGATAGCCAAGGGCACACATCTAAAGTATATCAAATTTGACGCAAG
CTTTCTAGACCAT

BO16833.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-RB 432 CG16986-PB 1..429 17..445 2145 100 Plus
CG16986-RA 432 CG16986-PA 1..429 17..445 2145 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-RB 694 CG16986-RB 164..592 17..445 2145 100 Plus
CG16986-RA 769 CG16986-RA 164..592 17..445 2145 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2601018..2601359 104..445 1710 100 Plus
3L 28110227 3L 2600870..2600961 17..108 460 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:11:19 has no hits.

BO16833.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:30 Download gff for BO16833.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 1..432 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:01 Download gff for BO16833.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 1..432 17..446 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:00 Download gff for BO16833.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..592 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:30 Download gff for BO16833.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 1..432 17..446 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:24 Download gff for BO16833.complete
Subject Subject Range Query Range Percent Splice Strand
CG16986-RA 164..592 17..447 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:24 Download gff for BO16833.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2600870..2600959 17..106 100 -> Plus
3L 2601021..2601359 107..447 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:00 Download gff for BO16833.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2600870..2600959 17..106 100 -> Plus
arm_3L 2601021..2601359 107..447 99   Plus

BO16833.pep Sequence

Translation from 16 to 463

> BO16833.pep
MGTRKKGLEFAKHITEIINKSTGFESHLQKVKIVDGGDGACTAELKVDQD
HVNLYKFLHGGYIMTLVDLITTYALMSKPCHPGVSVDLSVNFLNGAKLGD
DVVIQANLSKVGKYLAFIDCTLKHKKDDLVIAKGTHLKYIKFDASFLDH

BO16833.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG16986-PB 143 CG16986-PB 1..143 1..143 746 100 Plus
CG16986-PA 143 CG16986-PA 1..143 1..143 746 100 Plus
CG16985-PA 149 CG16985-PA 1..148 1..148 336 43.9 Plus