Clone Sequence Records
BO16833.3prime Sequence
461 bp (461 high quality bases) assembled on 2006-10-13
> BO16833.3prime
ATGGTCTAGAAAGCTTGCGTCAAATTTGATATACTTTAGATGTGTGCCCT
TGGCTATCACCAAGTCGTCCTTCTTGTGCTTCAGGGTGCAATCGATGAAG
GCAAGGTACTTGCCCACCTTGGACAGATTGGCCTGAATCACCACATCGTC
GCCCAGTTTGGCGCCGTTTAGAAAGTTTACACTAAGATCTACCGAAACTC
CGGGATGACATGGCTTGGACATTAGGGCGTAGGTGGTTATCAAGTCCACC
AGGGTCATGATATAACCGCCGTGCAAAAACTTGTACAAGTTCACATGATC
CTGGTCCACCTTTAGCTCAGCAGTGCAGGCTCCATCGCCACCGTCTACGA
TCTTGACCTTCTGTAGGTGACTTTCAAAGCCCGTTGACTTGTTGATAATC
TCGGTGATGTGTTTAGCGAATTCGAGTCCCTTCTTGCGAGTTCCCATGTC
GACTGATAACT
BO16833.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-PA | 432 | CG16986-RA | 1..429 | 447..19 | 2145 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:52:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-RB | 694 | CG16986-RB | 164..592 | 447..19 | 2145 | 100 | Minus |
CG16986-RA | 769 | CG16986-RA | 164..592 | 447..19 | 2145 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:52:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2601018..2601359 | 360..19 | 1710 | 100 | Minus |
3L | 28110227 | 3L | 2600870..2600961 | 447..356 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:52:19 has no hits.
BO16833.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:30 Download gff for
BO16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-PA | 1..432 | 18..447 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:38 Download gff for
BO16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..592 | 19..447 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:49 Download gff for
BO16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..592 | 19..447 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:49 Download gff for
BO16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2600870..2600959 | 358..447 | 100 | -> | Minus |
3L | 2601021..2601359 | 19..357 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:38 Download gff for
BO16833.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2600870..2600959 | 358..447 | 100 | -> | Minus |
arm_3L | 2601021..2601359 | 19..357 | 100 | | Minus |
BO16833.5prime Sequence
461 bp (461 high quality bases) assembled on 2006-10-13
> BO16833.5prime
GAAGTTATCAGTCGACATGGGAACTCGCAAGAAGGGACTCGAATTCGCTA
AACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTA
CAGAAGGTCAAGATCGTAGACGGTGGCGATGGAGCCTGCACTGCTGAGCT
AAAGGTGGACCAGGATCATGTGAACTTGTACAAGTTTTTGCACGGCGGTT
ATATCATGACCCTGGTGGACTTGATAACCACCTACGCCCTAATGTCCAAG
CCATGTCATCCCGGAGTTTCGGTAGATCTTAGTGTAAACTTTCTAAACGG
CGCCAAACTGGGCGACGATGTGGTGATTCAGGCCAATCTGTCCAAGGTGG
GCAAGTACCTTGCCTTCATCGATTGCACCCTGAAGCACAAGAAGGACGAC
TTGGTGATAGCCAAGGGCACACATCTAAAGTATATCAAATTTGACGCAAG
CTTTCTAGACC
BO16833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-PA | 432 | CG16986-RA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-RB | 694 | CG16986-RB | 164..592 | 17..445 | 2145 | 100 | Plus |
CG16986-RA | 769 | CG16986-RA | 164..592 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2601018..2601359 | 104..445 | 1710 | 100 | Plus |
3L | 28110227 | 3L | 2600870..2600961 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:04:59 has no hits.
BO16833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:31 Download gff for
BO16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-PA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:20 Download gff for
BO16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..592 | 17..445 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:28 Download gff for
BO16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..592 | 17..445 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:28 Download gff for
BO16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2600870..2600959 | 17..106 | 100 | -> | Plus |
3L | 2601021..2601359 | 107..445 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:20 Download gff for
BO16833.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2600870..2600959 | 17..106 | 100 | -> | Plus |
arm_3L | 2601021..2601359 | 107..445 | 100 | | Plus |
BO16833.complete Sequence
463 bp assembled on 2006-10-11
GenBank Submission: FJ633937
> BO16833.complete
GAAGTTATCAGTCGACATGGGAACTCGCAAGAAGGGACTCGAATTCGCTA
AACACATCACCGAGATTATCAACAAGTCAACGGGCTTTGAAAGTCACCTA
CAGAAGGTCAAGATCGTAGACGGTGGCGATGGAGCCTGCACTGCTGAGCT
AAAGGTGGACCAGGATCATGTGAACTTGTACAAGTTTTTGCACGGCGGTT
ATATCATGACCCTGGTGGACTTGATAACCACCTACGCCCTAATGTCCAAG
CCATGTCATCCCGGAGTTTCGGTAGATCTTAGTGTAAACTTTCTAAACGG
CGCCAAACTGGGCGACGATGTGGTGATTCAGGCCAATCTGTCCAAGGTGG
GCAAGTACCTTGCCTTCATCGATTGCACCCTGAAGCACAAGAAGGACGAC
TTGGTGATAGCCAAGGGCACACATCTAAAGTATATCAAATTTGACGCAAG
CTTTCTAGACCAT
BO16833.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-RB | 432 | CG16986-PB | 1..429 | 17..445 | 2145 | 100 | Plus |
CG16986-RA | 432 | CG16986-PA | 1..429 | 17..445 | 2145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-RB | 694 | CG16986-RB | 164..592 | 17..445 | 2145 | 100 | Plus |
CG16986-RA | 769 | CG16986-RA | 164..592 | 17..445 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2601018..2601359 | 104..445 | 1710 | 100 | Plus |
3L | 28110227 | 3L | 2600870..2600961 | 17..108 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:11:19 has no hits.
BO16833.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:30 Download gff for
BO16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:01 Download gff for
BO16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:00 Download gff for
BO16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..592 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:30 Download gff for
BO16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 1..432 | 17..446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:24 Download gff for
BO16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16986-RA | 164..592 | 17..447 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:24 Download gff for
BO16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2600870..2600959 | 17..106 | 100 | -> | Plus |
3L | 2601021..2601359 | 107..447 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:00 Download gff for
BO16833.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2600870..2600959 | 17..106 | 100 | -> | Plus |
arm_3L | 2601021..2601359 | 107..447 | 99 | | Plus |
BO16833.pep Sequence
Translation from 16 to 463
> BO16833.pep
MGTRKKGLEFAKHITEIINKSTGFESHLQKVKIVDGGDGACTAELKVDQD
HVNLYKFLHGGYIMTLVDLITTYALMSKPCHPGVSVDLSVNFLNGAKLGD
DVVIQANLSKVGKYLAFIDCTLKHKKDDLVIAKGTHLKYIKFDASFLDH
BO16833.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16986-PB | 143 | CG16986-PB | 1..143 | 1..143 | 746 | 100 | Plus |
CG16986-PA | 143 | CG16986-PA | 1..143 | 1..143 | 746 | 100 | Plus |
CG16985-PA | 149 | CG16985-PA | 1..148 | 1..148 | 336 | 43.9 | Plus |