Clone BO16834 Report

Search the DGRC for BO16834

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:34
Vector:pDNR-Dual
Associated Gene/TranscriptCG31909-RB
Protein status:BO16834.pep: validated full length
Sequenced Size:415

Clone Sequence Records

BO16834.3prime Sequence

413 bp (413 high quality bases) assembled on 2006-10-13

> BO16834.3prime
ATGGTCTAGAAAGCTTGCAAGCATATTCATCGAACCTTCAAAAGCGTCTA
CTTCATCCAGTAAATCTATATTGTCCCTTATAATAGTTGAATCCCTGATT
TCGTTTAAATATTTTGGGTTCTCTACGATTTCTCTATATAATTTCTGTAG
ATCGCTCTTCAATTTAAAGAAAAAGTTAGTTAACTTTTTCTCTTCTTCGA
GAGAACGACCGCTTTCAGTGTCGACAGTGTCCAAATATTCATAAGTCTCA
ATATGGCTGGGAGTAGTGCCATCAATTAAGTGATTTAGCTCATCCGCCAT
TGAAGAAAATTCTTTTAAATATTTATCTTGCAGAGCTCTCTCTACTCGTA
GTTGGTTCTGAAGTTCCGATTTGTTAGTATTGGAAAACGAGGGTTCCATG
TCGACTGATAACT

BO16834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-PA 384 CG31909-RA 1..381 399..19 1880 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 628 CG31909-RC 162..542 399..19 1890 99.7 Minus
CG31909-RB 555 CG31909-RB 89..469 399..19 1890 99.7 Minus
CG43800-RB 505 CG43800-RB 89..469 399..19 1830 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:55
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7257732..7258112 399..19 1890 99.7 Minus
2L 23513712 2L 7232230..7232610 19..399 1830 98.7 Plus
Blast to na_te.dros performed 2015-02-12 17:44:57
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6895..7002 162..55 108 55.6 Minus

BO16834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:31 Download gff for BO16834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-PA 1..384 16..399 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:38 Download gff for BO16834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..469 19..399 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:21 Download gff for BO16834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..469 19..399 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:21 Download gff for BO16834.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7257732..7258109 22..399 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:38 Download gff for BO16834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7257732..7258109 22..399 99 <- Minus

BO16834.5prime Sequence

413 bp (413 high quality bases) assembled on 2006-10-13

> BO16834.5prime
GAAGTTATCAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGG
AACTTCAGAACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTA
AAAGAATTTTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCAC
TACTCCCAGCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTG
AAAGCGGTCGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTAT
AAATTGAAGAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCC
AAAATATTTAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAG
ATTTACTGGATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTGCA
AGCTTTCTAGACC

BO16834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-PA 384 CG31909-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 628 CG31909-RC 162..542 17..397 1905 100 Plus
CG31909-RB 555 CG31909-RB 89..469 17..397 1905 100 Plus
CG43800-RB 505 CG43800-RB 89..469 17..397 1845 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7257732..7258112 17..397 1905 100 Plus
2L 23513712 2L 7232230..7232610 397..17 1845 99 Minus
Blast to na_te.dros performed 2015-02-03 06:39:16
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6855..7002 219..361 116 55.4 Plus

BO16834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:32 Download gff for BO16834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-PA 1..384 17..400 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:05 Download gff for BO16834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..469 17..397 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:22 Download gff for BO16834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..469 17..397 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:22 Download gff for BO16834.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7257732..7258109 17..394 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:05 Download gff for BO16834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7257732..7258109 17..394 100 <- Plus

BO16834.complete Sequence

415 bp assembled on 2006-10-11

GenBank Submission: FJ633938

> BO16834.complete
GAAGTTATCAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGG
AACTTCAGAACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTA
AAAGAATTTTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCAC
TACTCCCAGCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTG
AAAGCGGTCGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTAT
AAATTGAAGAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCC
AAAATATTTAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAG
ATTTACTGGATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTGCA
AGCTTTCTAGACCAT

BO16834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 384 CG31909-PC 1..381 17..397 1905 100 Plus
CG31909-RB 384 CG31909-PB 1..381 17..397 1905 100 Plus
CG43800-RB 384 CG43800-PB 1..381 17..397 1845 99 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-RC 628 CG31909-RC 162..542 17..397 1905 100 Plus
CG31909-RB 555 CG31909-RB 89..469 17..397 1905 100 Plus
CG43800-RB 505 CG43800-RB 89..469 17..397 1845 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7257732..7258112 17..397 1905 100 Plus
2L 23513712 2L 7232230..7232610 397..17 1845 99 Minus
Blast to na_te.dros performed 2014-11-27 16:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
ZAM 8435 ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). 6855..7002 219..361 116 55.4 Plus

BO16834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:59 Download gff for BO16834.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RA 1..384 17..400 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:14 Download gff for BO16834.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RC 162..542 17..397 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:08 Download gff for BO16834.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..469 17..399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:59 Download gff for BO16834.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RA 95..478 17..400 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:30 Download gff for BO16834.complete
Subject Subject Range Query Range Percent Splice Strand
CG31909-RB 89..469 17..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:30 Download gff for BO16834.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7257732..7258112 17..399 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:08 Download gff for BO16834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7257732..7258112 17..399 99   Plus

BO16834.pep Sequence

Translation from 16 to 415

> BO16834.pep
MEPSFSNTNKSELQNQLRVERALQDKYLKEFSSMADELNHLIDGTTPSHI
ETYEYLDTVDTESGRSLEEEKKLTNFFYKLKSDLQKLYREIVENPKYLNE
IRDSTIIRDNIDLLDEVDAFEGSMNMLASFLDH

BO16834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG31909-PC 127 CG31909-PC 1..127 1..127 646 100 Plus
CG31909-PB 127 CG31909-PB 1..127 1..127 646 100 Plus
CG43800-PB 127 CG43800-PB 1..127 1..127 638 98.4 Plus
CG43800-PA 127 CG43800-PA 1..127 1..127 638 98.4 Plus