Clone Sequence Records
BO16834.3prime Sequence
413 bp (413 high quality bases) assembled on 2006-10-13
> BO16834.3prime
ATGGTCTAGAAAGCTTGCAAGCATATTCATCGAACCTTCAAAAGCGTCTA
CTTCATCCAGTAAATCTATATTGTCCCTTATAATAGTTGAATCCCTGATT
TCGTTTAAATATTTTGGGTTCTCTACGATTTCTCTATATAATTTCTGTAG
ATCGCTCTTCAATTTAAAGAAAAAGTTAGTTAACTTTTTCTCTTCTTCGA
GAGAACGACCGCTTTCAGTGTCGACAGTGTCCAAATATTCATAAGTCTCA
ATATGGCTGGGAGTAGTGCCATCAATTAAGTGATTTAGCTCATCCGCCAT
TGAAGAAAATTCTTTTAAATATTTATCTTGCAGAGCTCTCTCTACTCGTA
GTTGGTTCTGAAGTTCCGATTTGTTAGTATTGGAAAACGAGGGTTCCATG
TCGACTGATAACT
BO16834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-PA | 384 | CG31909-RA | 1..381 | 399..19 | 1880 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:44:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-RC | 628 | CG31909-RC | 162..542 | 399..19 | 1890 | 99.7 | Minus |
CG31909-RB | 555 | CG31909-RB | 89..469 | 399..19 | 1890 | 99.7 | Minus |
CG43800-RB | 505 | CG43800-RB | 89..469 | 399..19 | 1830 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:44:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7257732..7258112 | 399..19 | 1890 | 99.7 | Minus |
2L | 23513712 | 2L | 7232230..7232610 | 19..399 | 1830 | 98.7 | Plus |
Blast to na_te.dros performed 2015-02-12 17:44:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6895..7002 | 162..55 | 108 | 55.6 | Minus |
BO16834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:31 Download gff for
BO16834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-PA | 1..384 | 16..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:38 Download gff for
BO16834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..469 | 19..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:21 Download gff for
BO16834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..469 | 19..399 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:21 Download gff for
BO16834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7257732..7258109 | 22..399 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:38 Download gff for
BO16834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7257732..7258109 | 22..399 | 99 | <- | Minus |
BO16834.5prime Sequence
413 bp (413 high quality bases) assembled on 2006-10-13
> BO16834.5prime
GAAGTTATCAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGG
AACTTCAGAACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTA
AAAGAATTTTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCAC
TACTCCCAGCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTG
AAAGCGGTCGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTAT
AAATTGAAGAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCC
AAAATATTTAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAG
ATTTACTGGATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTGCA
AGCTTTCTAGACC
BO16834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-PA | 384 | CG31909-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-RC | 628 | CG31909-RC | 162..542 | 17..397 | 1905 | 100 | Plus |
CG31909-RB | 555 | CG31909-RB | 89..469 | 17..397 | 1905 | 100 | Plus |
CG43800-RB | 505 | CG43800-RB | 89..469 | 17..397 | 1845 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7257732..7258112 | 17..397 | 1905 | 100 | Plus |
2L | 23513712 | 2L | 7232230..7232610 | 397..17 | 1845 | 99 | Minus |
Blast to na_te.dros performed 2015-02-03 06:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6855..7002 | 219..361 | 116 | 55.4 | Plus |
BO16834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:32 Download gff for
BO16834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-PA | 1..384 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:05 Download gff for
BO16834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..469 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:22 Download gff for
BO16834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..469 | 17..397 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:22 Download gff for
BO16834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7257732..7258109 | 17..394 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:05 Download gff for
BO16834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7257732..7258109 | 17..394 | 100 | <- | Plus |
BO16834.complete Sequence
415 bp assembled on 2006-10-11
GenBank Submission: FJ633938
> BO16834.complete
GAAGTTATCAGTCGACATGGAACCCTCGTTTTCCAATACTAACAAATCGG
AACTTCAGAACCAACTACGAGTAGAGAGAGCTCTGCAAGATAAATATTTA
AAAGAATTTTCTTCAATGGCGGATGAGCTAAATCACTTAATTGATGGCAC
TACTCCCAGCCATATTGAGACTTATGAATATTTGGACACTGTCGACACTG
AAAGCGGTCGTTCTCTCGAAGAAGAGAAAAAGTTAACTAACTTTTTCTAT
AAATTGAAGAGCGATCTACAGAAATTATATAGAGAAATCGTAGAGAACCC
AAAATATTTAAACGAAATCAGGGATTCAACTATTATAAGGGACAATATAG
ATTTACTGGATGAAGTAGACGCTTTTGAAGGTTCGATGAATATGCTTGCA
AGCTTTCTAGACCAT
BO16834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-RC | 384 | CG31909-PC | 1..381 | 17..397 | 1905 | 100 | Plus |
CG31909-RB | 384 | CG31909-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
CG43800-RB | 384 | CG43800-PB | 1..381 | 17..397 | 1845 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:06:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-RC | 628 | CG31909-RC | 162..542 | 17..397 | 1905 | 100 | Plus |
CG31909-RB | 555 | CG31909-RB | 89..469 | 17..397 | 1905 | 100 | Plus |
CG43800-RB | 505 | CG43800-RB | 89..469 | 17..397 | 1845 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:06:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7257732..7258112 | 17..397 | 1905 | 100 | Plus |
2L | 23513712 | 2L | 7232230..7232610 | 397..17 | 1845 | 99 | Minus |
Blast to na_te.dros performed 2014-11-27 16:06:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 6855..7002 | 219..361 | 116 | 55.4 | Plus |
BO16834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:59 Download gff for
BO16834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RA | 1..384 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:14 Download gff for
BO16834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RC | 162..542 | 17..397 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:08 Download gff for
BO16834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..469 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:59 Download gff for
BO16834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RA | 95..478 | 17..400 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:10:30 Download gff for
BO16834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31909-RB | 89..469 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:10:30 Download gff for
BO16834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7257732..7258112 | 17..399 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:08 Download gff for
BO16834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7257732..7258112 | 17..399 | 99 | | Plus |
BO16834.pep Sequence
Translation from 16 to 415
> BO16834.pep
MEPSFSNTNKSELQNQLRVERALQDKYLKEFSSMADELNHLIDGTTPSHI
ETYEYLDTVDTESGRSLEEEKKLTNFFYKLKSDLQKLYREIVENPKYLNE
IRDSTIIRDNIDLLDEVDAFEGSMNMLASFLDH
BO16834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31909-PC | 127 | CG31909-PC | 1..127 | 1..127 | 646 | 100 | Plus |
CG31909-PB | 127 | CG31909-PB | 1..127 | 1..127 | 646 | 100 | Plus |
CG43800-PB | 127 | CG43800-PB | 1..127 | 1..127 | 638 | 98.4 | Plus |
CG43800-PA | 127 | CG43800-PA | 1..127 | 1..127 | 638 | 98.4 | Plus |