Clone Sequence Records
BO16836.3prime Sequence
353 bp (353 high quality bases) assembled on 2006-10-13
> BO16836.3prime
ATGGTCTAGAAAGCTTGCCTCAGCATCCACATTCAACCGCACCTGCTGGC
AGAGGTCCTTCAGCTGCTTGCCCGACTCCTCCATTGCGGTTCGCAGCTGG
GAGAGACTGATCTGCAGCCGGGCCATGCGCATGTCGCCGGCTTTTAGCCG
CACCTCCTGGTTGGACGTAAAGCCGGTGGCATCTCGACGAGCTCGCTGTG
GGCGTGGGTGCTGTGGACGTGGGTGCAATTGGAGGTTCCTTTGGGTGACC
AGATTGGCAGCCAGACGAGTGTCGGACTCCTCCGTCTGGTCGAGGCCATT
GCTGGGTCGGCAGTGCGTCTTGGGTTTCGTTTCCGGCATGTCGACTGATA
ACT
BO16836.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15638-PA | 324 | CG15638-RA | 1..321 | 339..19 | 1605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15638-RA | 488 | CG15638-RA | 58..378 | 339..19 | 1605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13535401..13535721 | 19..339 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:45:02 has no hits.
BO16836.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:34 Download gff for
BO16836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-PA | 1..324 | 16..339 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:40 Download gff for
BO16836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 56..383 | 14..342 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:04:36 Download gff for
BO16836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 56..383 | 14..342 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:04:36 Download gff for
BO16836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13535396..13535723 | 14..342 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:40 Download gff for
BO16836.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13535396..13535723 | 14..342 | 99 | | Plus |
BO16836.5prime Sequence
353 bp (353 high quality bases) assembled on 2006-10-13
> BO16836.5prime
GAAGTTATCAGTCGACATGCCGGAAACGAAACCCAAGACGCACTGCCGAC
CCAGCAATGGCCTCGACCAGACGGAGGAGTCCGACACTCGTCTGGCTGCC
AATCTGGTCACCCAAAGGAACCTCCAATTGCACCCACGTCCACAGCACCC
ACGCCCACAGCGAGCTCGTCGAGATGCCACCGGCTTTACGTCCAACCAGG
AGGTGCGGCTAAAAGCCGGCGACATGCGCATGGCCCGGCTGCAGATCAGT
CTCTCCCAGCTGCGAACCGCAATGGAGGAGTCGGGCAAGCAGCTGAAGGA
CCTCTGCCAGCAGGTGCGGTTGAATGTGGATGCTGAGGCAAGCTTTCTAG
ACC
BO16836.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15638-PA | 324 | CG15638-RA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15638-RA | 488 | CG15638-RA | 58..378 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13535401..13535721 | 337..17 | 1605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:09:02 has no hits.
BO16836.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:34 Download gff for
BO16836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-PA | 1..324 | 17..340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:36 Download gff for
BO16836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 56..383 | 14..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:13:31 Download gff for
BO16836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 56..383 | 14..342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:13:31 Download gff for
BO16836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13535396..13535723 | 14..342 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:36 Download gff for
BO16836.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13535396..13535723 | 14..342 | 99 | | Minus |
BO16836.complete Sequence
355 bp assembled on 2006-10-11
GenBank Submission: FJ633939
> BO16836.complete
GAAGTTATCAGTCGACATGCCGGAAACGAAACCCAAGACGCACTGCCGAC
CCAGCAATGGCCTCGACCAGACGGAGGAGTCCGACACTCGTCTGGCTGCC
AATCTGGTCACCCAAAGGAACCTCCAATTGCACCCACGTCCACAGCACCC
ACGCCCACAGCGAGCTCGTCGAGATGCCACCGGCTTTACGTCCAACCAGG
AGGTGCGGCTAAAAGCCGGCGACATGCGCATGGCCCGGCTGCAGATCAGT
CTCTCCCAGCTGCGAACCGCAATGGAGGAGTCGGGCAAGCAGCTGAAGGA
CCTCTGCCAGCAGGTGCGGTTGAATGTGGATGCTGAGGCAAGCTTTCTAG
ACCAT
BO16836.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:57:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15638-RA | 324 | CG15638-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:58:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15638-RA | 488 | CG15638-RA | 58..378 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13535401..13535721 | 337..17 | 1605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:57:58 has no hits.
BO16836.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:27 Download gff for
BO16836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 1..324 | 17..340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:23 Download gff for
BO16836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 60..387 | 14..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:52 Download gff for
BO16836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 58..378 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:27 Download gff for
BO16836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 60..387 | 14..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:08:01 Download gff for
BO16836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15638-RA | 58..378 | 17..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:08:01 Download gff for
BO16836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13535398..13535721 | 17..339 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:52 Download gff for
BO16836.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13535398..13535721 | 17..339 | 99 | | Minus |
BO16836.pep Sequence
Translation from 16 to 355
> BO16836.pep
MPETKPKTHCRPSNGLDQTEESDTRLAANLVTQRNLQLHPRPQHPRPQRA
RRDATGFTSNQEVRLKAGDMRMARLQISLSQLRTAMEESGKQLKDLCQQV
RLNVDAEASFLDH
BO16836.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15638-PA | 107 | CG15638-PA | 1..107 | 1..107 | 551 | 100 | Plus |
