Clone Sequence Records
BO16839.3prime Sequence
512 bp (512 high quality bases) assembled on 2006-10-13
> BO16839.3prime
ATGGTCTAGAAAGCTTGCATTTTCATTTCGATTCAAAGCGCAGCCCACTT
GCGTTTCCATCAGAGTTTTCAGACCATTTTCCGACCAACCAGCTCTCGCA
TCCTTAACCACCGCTGAGTAAACAACTGTGGAGCCATCTTCAAATGTTTT
CATGGCGTAAAAGGACTTGCCCTCCTCCAACCAAACACGCTGTTCATCCT
CGGAATTGCCGGCCGATGGGGCAGACTTTGGGTCCTTGCCAAAGTTTTGT
CCATACCATTTGCGATATAGATCCGTTGGCTGATTCTTGTACGACCATCT
CAGAACTTTTAGATAGAACATCAGGAACTTATGCACATTCTCCTTAATCC
TAATCGACGATCCCTGGCGGAACTTGGCCAGATCTTCTAGAGTGCTTCGA
CATATCTCCCGATCTTTTGGTCTCCCGAGATTCTCGCATATGGCCAGCGC
TACGCGACGCAGATTCTCGAACTCCTCGTCCAGCAGCTGCTGTCTCATGT
CGACTGATAACT
BO16839.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-PA | 483 | CG17217-RA | 1..480 | 498..19 | 2400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:59:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-RA | 626 | CG17217-RA | 108..587 | 498..19 | 2400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12170657..12170899 | 498..256 | 1215 | 100 | Minus |
2L | 23513712 | 2L | 12170956..12171193 | 256..19 | 1190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 17:59:54 has no hits.
BO16839.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:38 Download gff for
BO16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-PA | 1..483 | 16..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:52 Download gff for
BO16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..593 | 11..498 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:54 Download gff for
BO16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..593 | 11..498 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:54 Download gff for
BO16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12170657..12170899 | 256..498 | 100 | -> | Minus |
2L | 12170957..12171199 | 11..255 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:52 Download gff for
BO16839.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12170657..12170899 | 256..498 | 100 | -> | Minus |
arm_2L | 12170957..12171199 | 11..255 | 98 | | Minus |
BO16839.5prime Sequence
512 bp (512 high quality bases) assembled on 2006-10-13
> BO16839.5prime
GAAGTTATCAGTCGACATGAGACAGCAGCTGCTGGACGAGGAGTTCGAGA
ATCTGCGTCGCGTAGCGCTGGCCATATGCGAGAATCTCGGGAGACCAAAA
GATCGGGAGATATGTCGAAGCACTCTAGAAGATCTGGCCAAGTTCCGCCA
GGGATCGTCGATTAGGATTAAGGAGAATGTGCATAAGTTCCTGATGTTCT
ATCTAAAAGTTCTGAGATGGTCGTACAAGAATCAGCCAACGGATCTATAT
CGCAAATGGTATGGACAAAACTTTGGCAAGGACCCAAAGTCTGCCCCATC
GGCCGGCAATTCCGAGGATGAACAGCGTGTTTGGTTGGAGGAGGGCAAGT
CCTTTTACGCCATGAAAACATTTGAAGATGGCTCCACAGTTGTTTACTCA
GCGGTGGTTAAGGATGCGAGAGCTGGTTGGTCGGAAAATGGTCTGAAAAC
TCTGATGGAAACGCAAGTGGGCTGCGCTTTGAATCGAAATGAAAATGCAA
GCTTTCTAGACC
BO16839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-PA | 483 | CG17217-RA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-RA | 626 | CG17217-RA | 108..587 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12170657..12170899 | 17..259 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 12170956..12171193 | 259..496 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:10:21 has no hits.
BO16839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:39 Download gff for
BO16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-PA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:21 Download gff for
BO16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..593 | 17..504 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:53 Download gff for
BO16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..593 | 17..504 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:53 Download gff for
BO16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12170657..12170899 | 17..259 | 100 | -> | Plus |
2L | 12170957..12171199 | 260..504 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:21 Download gff for
BO16839.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12170657..12170899 | 17..259 | 100 | -> | Plus |
arm_2L | 12170957..12171199 | 260..504 | 98 | | Plus |
BO16839.complete Sequence
514 bp assembled on 2006-10-11
GenBank Submission: FJ633940
> BO16839.complete
GAAGTTATCAGTCGACATGAGACAGCAGCTGCTGGACGAGGAGTTCGAGA
ATCTGCGTCGCGTAGCGCTGGCCATATGCGAGAATCTCGGGAGACCAAAA
GATCGGGAGATATGTCGAAGCACTCTAGAAGATCTGGCCAAGTTCCGCCA
GGGATCGTCGATTAGGATTAAGGAGAATGTGCATAAGTTCCTGATGTTCT
ATCTAAAAGTTCTGAGATGGTCGTACAAGAATCAGCCAACGGATCTATAT
CGCAAATGGTATGGACAAAACTTTGGCAAGGACCCAAAGTCTGCCCCATC
GGCCGGCAATTCCGAGGATGAACAGCGTGTTTGGTTGGAGGAGGGCAAGT
CCTTTTACGCCATGAAAACATTTGAAGATGGCTCCACAGTTGTTTACTCA
GCGGTGGTTAAGGATGCGAGAGCTGGTTGGTCGGAAAATGGTCTGAAAAC
TCTGATGGAAACGCAAGTGGGCTGCGCTTTGAATCGAAATGAAAATGCAA
GCTTTCTAGACCAT
BO16839.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-RA | 483 | CG17217-PA | 1..480 | 17..496 | 2400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-RA | 626 | CG17217-RA | 108..587 | 17..496 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 12170657..12170899 | 17..259 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 12170956..12171193 | 259..496 | 1190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:42:16 has no hits.
BO16839.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:18 Download gff for
BO16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:25 Download gff for
BO16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:04 Download gff for
BO16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..587 | 17..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:19 Download gff for
BO16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 1..483 | 17..499 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:50 Download gff for
BO16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17217-RA | 108..587 | 17..498 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:50 Download gff for
BO16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 12170657..12170899 | 17..259 | 100 | -> | Plus |
2L | 12170957..12171193 | 260..498 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:04 Download gff for
BO16839.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 12170657..12170899 | 17..259 | 100 | -> | Plus |
arm_2L | 12170957..12171193 | 260..498 | 99 | | Plus |
BO16839.pep Sequence
Translation from 16 to 514
> BO16839.pep
MRQQLLDEEFENLRRVALAICENLGRPKDREICRSTLEDLAKFRQGSSIR
IKENVHKFLMFYLKVLRWSYKNQPTDLYRKWYGQNFGKDPKSAPSAGNSE
DEQRVWLEEGKSFYAMKTFEDGSTVVYSAVVKDARAGWSENGLKTLMETQ
VGCALNRNENASFLDH
BO16839.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17217-PA | 160 | CG17217-PA | 1..160 | 1..160 | 845 | 100 | Plus |