Clone BO16839 Report

Search the DGRC for BO16839

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG17217-RA
Protein status:BO16839.pep: validated full length
Sequenced Size:514

Clone Sequence Records

BO16839.3prime Sequence

512 bp (512 high quality bases) assembled on 2006-10-13

> BO16839.3prime
ATGGTCTAGAAAGCTTGCATTTTCATTTCGATTCAAAGCGCAGCCCACTT
GCGTTTCCATCAGAGTTTTCAGACCATTTTCCGACCAACCAGCTCTCGCA
TCCTTAACCACCGCTGAGTAAACAACTGTGGAGCCATCTTCAAATGTTTT
CATGGCGTAAAAGGACTTGCCCTCCTCCAACCAAACACGCTGTTCATCCT
CGGAATTGCCGGCCGATGGGGCAGACTTTGGGTCCTTGCCAAAGTTTTGT
CCATACCATTTGCGATATAGATCCGTTGGCTGATTCTTGTACGACCATCT
CAGAACTTTTAGATAGAACATCAGGAACTTATGCACATTCTCCTTAATCC
TAATCGACGATCCCTGGCGGAACTTGGCCAGATCTTCTAGAGTGCTTCGA
CATATCTCCCGATCTTTTGGTCTCCCGAGATTCTCGCATATGGCCAGCGC
TACGCGACGCAGATTCTCGAACTCCTCGTCCAGCAGCTGCTGTCTCATGT
CGACTGATAACT

BO16839.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-PA 483 CG17217-RA 1..480 498..19 2400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:59:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-RA 626 CG17217-RA 108..587 498..19 2400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12170657..12170899 498..256 1215 100 Minus
2L 23513712 2L 12170956..12171193 256..19 1190 100 Minus
Blast to na_te.dros performed on 2015-02-02 17:59:54 has no hits.

BO16839.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:38 Download gff for BO16839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-PA 1..483 16..498 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:52 Download gff for BO16839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..593 11..498 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:54 Download gff for BO16839.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..593 11..498 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:54 Download gff for BO16839.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 12170657..12170899 256..498 100 -> Minus
2L 12170957..12171199 11..255 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:52 Download gff for BO16839.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12170657..12170899 256..498 100 -> Minus
arm_2L 12170957..12171199 11..255 98   Minus

BO16839.5prime Sequence

512 bp (512 high quality bases) assembled on 2006-10-13

> BO16839.5prime
GAAGTTATCAGTCGACATGAGACAGCAGCTGCTGGACGAGGAGTTCGAGA
ATCTGCGTCGCGTAGCGCTGGCCATATGCGAGAATCTCGGGAGACCAAAA
GATCGGGAGATATGTCGAAGCACTCTAGAAGATCTGGCCAAGTTCCGCCA
GGGATCGTCGATTAGGATTAAGGAGAATGTGCATAAGTTCCTGATGTTCT
ATCTAAAAGTTCTGAGATGGTCGTACAAGAATCAGCCAACGGATCTATAT
CGCAAATGGTATGGACAAAACTTTGGCAAGGACCCAAAGTCTGCCCCATC
GGCCGGCAATTCCGAGGATGAACAGCGTGTTTGGTTGGAGGAGGGCAAGT
CCTTTTACGCCATGAAAACATTTGAAGATGGCTCCACAGTTGTTTACTCA
GCGGTGGTTAAGGATGCGAGAGCTGGTTGGTCGGAAAATGGTCTGAAAAC
TCTGATGGAAACGCAAGTGGGCTGCGCTTTGAATCGAAATGAAAATGCAA
GCTTTCTAGACC

BO16839.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-PA 483 CG17217-RA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-RA 626 CG17217-RA 108..587 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12170657..12170899 17..259 1215 100 Plus
2L 23513712 2L 12170956..12171193 259..496 1190 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:10:21 has no hits.

BO16839.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:39 Download gff for BO16839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-PA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:21 Download gff for BO16839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..593 17..504 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:53 Download gff for BO16839.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..593 17..504 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:53 Download gff for BO16839.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12170657..12170899 17..259 100 -> Plus
2L 12170957..12171199 260..504 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:21 Download gff for BO16839.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12170657..12170899 17..259 100 -> Plus
arm_2L 12170957..12171199 260..504 98   Plus

BO16839.complete Sequence

514 bp assembled on 2006-10-11

GenBank Submission: FJ633940

> BO16839.complete
GAAGTTATCAGTCGACATGAGACAGCAGCTGCTGGACGAGGAGTTCGAGA
ATCTGCGTCGCGTAGCGCTGGCCATATGCGAGAATCTCGGGAGACCAAAA
GATCGGGAGATATGTCGAAGCACTCTAGAAGATCTGGCCAAGTTCCGCCA
GGGATCGTCGATTAGGATTAAGGAGAATGTGCATAAGTTCCTGATGTTCT
ATCTAAAAGTTCTGAGATGGTCGTACAAGAATCAGCCAACGGATCTATAT
CGCAAATGGTATGGACAAAACTTTGGCAAGGACCCAAAGTCTGCCCCATC
GGCCGGCAATTCCGAGGATGAACAGCGTGTTTGGTTGGAGGAGGGCAAGT
CCTTTTACGCCATGAAAACATTTGAAGATGGCTCCACAGTTGTTTACTCA
GCGGTGGTTAAGGATGCGAGAGCTGGTTGGTCGGAAAATGGTCTGAAAAC
TCTGATGGAAACGCAAGTGGGCTGCGCTTTGAATCGAAATGAAAATGCAA
GCTTTCTAGACCAT

BO16839.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:42:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-RA 483 CG17217-PA 1..480 17..496 2400 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-RA 626 CG17217-RA 108..587 17..496 2400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12170657..12170899 17..259 1215 100 Plus
2L 23513712 2L 12170956..12171193 259..496 1190 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:42:16 has no hits.

BO16839.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:18 Download gff for BO16839.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:25 Download gff for BO16839.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:04 Download gff for BO16839.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..587 17..498 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:19 Download gff for BO16839.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 1..483 17..499 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:24:50 Download gff for BO16839.complete
Subject Subject Range Query Range Percent Splice Strand
CG17217-RA 108..587 17..498 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:24:50 Download gff for BO16839.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12170657..12170899 17..259 100 -> Plus
2L 12170957..12171193 260..498 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:04 Download gff for BO16839.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12170657..12170899 17..259 100 -> Plus
arm_2L 12170957..12171193 260..498 99   Plus

BO16839.pep Sequence

Translation from 16 to 514

> BO16839.pep
MRQQLLDEEFENLRRVALAICENLGRPKDREICRSTLEDLAKFRQGSSIR
IKENVHKFLMFYLKVLRWSYKNQPTDLYRKWYGQNFGKDPKSAPSAGNSE
DEQRVWLEEGKSFYAMKTFEDGSTVVYSAVVKDARAGWSENGLKTLMETQ
VGCALNRNENASFLDH

BO16839.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17217-PA 160 CG17217-PA 1..160 1..160 845 100 Plus