Clone BO16842 Report

Search the DGRC for BO16842

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:42
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO16842.pep: validated full length
Sequenced Size:403

Clone Sequence Records

BO16842.3prime Sequence

403 bp (403 high quality bases) assembled on 2006-10-13

> BO16842.3prime
TAATGGTCTAGAAAGCTTGCTCGATTGTGCTCATTGGCACTACTCTCGTA
CATATTAGTAGAATATTCATCGATTGTCAAGTGGCTGTTACTTTCGATCA
TACCCGAGTCCATATTGCTATAGTCCTTGGACGCTTTACTTAAACCATCA
CTACCGCAATAGGGAAGACAACCAATTCTGCCTAAATCATTTGGATTATT
GGAATCTAGAGGATTATCAGCACCCGGTGGCAAACTAGTGCAATGTTGCG
TACAATTGTCGCAGGGATTCTTATCAGTGGGCACACCATTGCCGGATTGG
CATGAATTTGGGGAGGAGGACGGTTCATATTTCCGGGGTCTCCCTCTCGA
CAAGTGCCGCCTTTTGACAAACTCATTATCGTCGACCATGTCGACTGATA
ACT

BO16842.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG32937-PA 372 CG32937-RA 1..369 389..21 1845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RC 3359 CG43067-RC 2438..2806 389..21 1845 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9726573..9726941 21..389 1845 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:05:40 has no hits.

BO16842.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:40 Download gff for BO16842.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32937-PA 1..372 17..389 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:27 Download gff for BO16842.3prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RC 1202..1573 17..389 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:39 Download gff for BO16842.3prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RC 2438..2809 17..389 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:39 Download gff for BO16842.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9726569..9726941 17..389 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:27 Download gff for BO16842.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5552291..5552663 17..389 99   Plus

BO16842.5prime Sequence

401 bp (401 high quality bases) assembled on 2006-10-13

> BO16842.5prime
GAAGTTATCAGTCGACATGGTCGACGATAATGAGTTTGTCAAAAGGCGGC
ACTTGTCGAGAGGGAGACCCCGGAAATATGAACCGTCCTCCTCCCCAAAT
TCATGCCAATCCGGCAATGGTGTGCCCACTGATAAGAATCCCTGCGACAA
TTGTACGCAACATTGCACTAGTTTGCCACCGGGTGCTGATAATCCTCTAG
ATTCCAATAATCCAAATGATTTAGGCAGAATTGGTTGTCTTCCCTATTGC
GGTAGTGATGGTTTAAGTAAAGCGTCCAAGGACTATAGCAATATGGACTC
GGGTATGATCGAAAGTAACAGCCACTTGACAATCGATGAATATTCTACTA
ATATGTACGAGAGTAGTGCCAATGAGCACAATCGAGCAAGCTTTCTAGAC
C

BO16842.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32937-PA 372 CG32937-RA 1..369 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RC 3359 CG43067-RC 2438..2806 17..385 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9726573..9726941 385..17 1845 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:58:06 has no hits.

BO16842.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:42 Download gff for BO16842.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32937-PA 1..372 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:35 Download gff for BO16842.5prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RC 1202..1573 17..389 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:19 Download gff for BO16842.5prime
Subject Subject Range Query Range Percent Splice Strand
FoxP-RC 2438..2809 17..389 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:19 Download gff for BO16842.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9726569..9726941 17..389 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:35 Download gff for BO16842.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5552291..5552663 17..389 99   Minus

BO16842.complete Sequence

403 bp assembled on 2006-10-11

GenBank Submission: FJ633941

> BO16842.complete
GAAGTTATCAGTCGACATGGTCGACGATAATGAGTTTGTCAAAAGGCGGC
ACTTGTCGAGAGGGAGACCCCGGAAATATGAACCGTCCTCCTCCCCAAAT
TCATGCCAATCCGGCAATGGTGTGCCCACTGATAAGAATCCCTGCGACAA
TTGTACGCAACATTGCACTAGTTTGCCACCGGGTGCTGATAATCCTCTAG
ATTCCAATAATCCAAATGATTTAGGCAGAATTGGTTGTCTTCCCTATTGC
GGTAGTGATGGTTTAAGTAAAGCGTCCAAGGACTATAGCAATATGGACTC
GGGTATGATCGAAAGTAACAGCCACTTGACAATCGATGAATATTCTACTA
ATATGTACGAGAGTAGTGCCAATGAGCACAATCGAGCAAGCTTTCTAGAC
CAT

BO16842.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RC 1563 CG43067-PC 1192..1560 17..385 1845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-RC 3359 CG43067-RC 2438..2806 17..385 1845 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9726573..9726941 385..17 1845 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:22:13 has no hits.

BO16842.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:00 Download gff for BO16842.complete
Subject Subject Range Query Range Percent Splice Strand
CG32937-RA 1..372 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:16 Download gff for BO16842.complete
Subject Subject Range Query Range Percent Splice Strand
CG32937-RA 76..447 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:53 Download gff for BO16842.complete
Subject Subject Range Query Range Percent Splice Strand
FoxP-RC 1202..1570 17..387 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:00 Download gff for BO16842.complete
Subject Subject Range Query Range Percent Splice Strand
CG32937-RA 76..447 17..389 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:58 Download gff for BO16842.complete
Subject Subject Range Query Range Percent Splice Strand
FoxP-RC 2438..2806 17..387 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:58 Download gff for BO16842.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9726571..9726941 17..387 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:53 Download gff for BO16842.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5552293..5552663 17..387 99   Minus

BO16842.pep Sequence

Translation from 16 to 403

> BO16842.pep
MVDDNEFVKRRHLSRGRPRKYEPSSSPNSCQSGNGVPTDKNPCDNCTQHC
TSLPPGADNPLDSNNPNDLGRIGCLPYCGSDGLSKASKDYSNMDSGMIES
NSHLTIDEYSTNMYESSANEHNRASFLDH

BO16842.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:49
Subject Length Description Subject Range Query Range Score Percent Strand
FoxP-PC 520 CG43067-PC 398..520 1..123 682 100 Plus