Clone Sequence Records
BO16842.3prime Sequence
403 bp (403 high quality bases) assembled on 2006-10-13
> BO16842.3prime
TAATGGTCTAGAAAGCTTGCTCGATTGTGCTCATTGGCACTACTCTCGTA
CATATTAGTAGAATATTCATCGATTGTCAAGTGGCTGTTACTTTCGATCA
TACCCGAGTCCATATTGCTATAGTCCTTGGACGCTTTACTTAAACCATCA
CTACCGCAATAGGGAAGACAACCAATTCTGCCTAAATCATTTGGATTATT
GGAATCTAGAGGATTATCAGCACCCGGTGGCAAACTAGTGCAATGTTGCG
TACAATTGTCGCAGGGATTCTTATCAGTGGGCACACCATTGCCGGATTGG
CATGAATTTGGGGAGGAGGACGGTTCATATTTCCGGGGTCTCCCTCTCGA
CAAGTGCCGCCTTTTGACAAACTCATTATCGTCGACCATGTCGACTGATA
ACT
BO16842.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32937-PA | 372 | CG32937-RA | 1..369 | 389..21 | 1845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RC | 3359 | CG43067-RC | 2438..2806 | 389..21 | 1845 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9726573..9726941 | 21..389 | 1845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:05:40 has no hits.
BO16842.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:40 Download gff for
BO16842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32937-PA | 1..372 | 17..389 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:27 Download gff for
BO16842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RC | 1202..1573 | 17..389 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:39 Download gff for
BO16842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RC | 2438..2809 | 17..389 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:39 Download gff for
BO16842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9726569..9726941 | 17..389 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:27 Download gff for
BO16842.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5552291..5552663 | 17..389 | 99 | | Plus |
BO16842.5prime Sequence
401 bp (401 high quality bases) assembled on 2006-10-13
> BO16842.5prime
GAAGTTATCAGTCGACATGGTCGACGATAATGAGTTTGTCAAAAGGCGGC
ACTTGTCGAGAGGGAGACCCCGGAAATATGAACCGTCCTCCTCCCCAAAT
TCATGCCAATCCGGCAATGGTGTGCCCACTGATAAGAATCCCTGCGACAA
TTGTACGCAACATTGCACTAGTTTGCCACCGGGTGCTGATAATCCTCTAG
ATTCCAATAATCCAAATGATTTAGGCAGAATTGGTTGTCTTCCCTATTGC
GGTAGTGATGGTTTAAGTAAAGCGTCCAAGGACTATAGCAATATGGACTC
GGGTATGATCGAAAGTAACAGCCACTTGACAATCGATGAATATTCTACTA
ATATGTACGAGAGTAGTGCCAATGAGCACAATCGAGCAAGCTTTCTAGAC
C
BO16842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32937-PA | 372 | CG32937-RA | 1..369 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RC | 3359 | CG43067-RC | 2438..2806 | 17..385 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9726573..9726941 | 385..17 | 1845 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:58:06 has no hits.
BO16842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:42 Download gff for
BO16842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32937-PA | 1..372 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:23:35 Download gff for
BO16842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RC | 1202..1573 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:19 Download gff for
BO16842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RC | 2438..2809 | 17..389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:19 Download gff for
BO16842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9726569..9726941 | 17..389 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:23:35 Download gff for
BO16842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5552291..5552663 | 17..389 | 99 | | Minus |
BO16842.complete Sequence
403 bp assembled on 2006-10-11
GenBank Submission: FJ633941
> BO16842.complete
GAAGTTATCAGTCGACATGGTCGACGATAATGAGTTTGTCAAAAGGCGGC
ACTTGTCGAGAGGGAGACCCCGGAAATATGAACCGTCCTCCTCCCCAAAT
TCATGCCAATCCGGCAATGGTGTGCCCACTGATAAGAATCCCTGCGACAA
TTGTACGCAACATTGCACTAGTTTGCCACCGGGTGCTGATAATCCTCTAG
ATTCCAATAATCCAAATGATTTAGGCAGAATTGGTTGTCTTCCCTATTGC
GGTAGTGATGGTTTAAGTAAAGCGTCCAAGGACTATAGCAATATGGACTC
GGGTATGATCGAAAGTAACAGCCACTTGACAATCGATGAATATTCTACTA
ATATGTACGAGAGTAGTGCCAATGAGCACAATCGAGCAAGCTTTCTAGAC
CAT
BO16842.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RC | 1563 | CG43067-PC | 1192..1560 | 17..385 | 1845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-RC | 3359 | CG43067-RC | 2438..2806 | 17..385 | 1845 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9726573..9726941 | 385..17 | 1845 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:22:13 has no hits.
BO16842.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:00 Download gff for
BO16842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32937-RA | 1..372 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:16 Download gff for
BO16842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32937-RA | 76..447 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:30:53 Download gff for
BO16842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RC | 1202..1570 | 17..387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:00 Download gff for
BO16842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32937-RA | 76..447 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:58 Download gff for
BO16842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FoxP-RC | 2438..2806 | 17..387 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:58 Download gff for
BO16842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9726571..9726941 | 17..387 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:30:53 Download gff for
BO16842.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5552293..5552663 | 17..387 | 99 | | Minus |
BO16842.pep Sequence
Translation from 16 to 403
> BO16842.pep
MVDDNEFVKRRHLSRGRPRKYEPSSSPNSCQSGNGVPTDKNPCDNCTQHC
TSLPPGADNPLDSNNPNDLGRIGCLPYCGSDGLSKASKDYSNMDSGMIES
NSHLTIDEYSTNMYESSANEHNRASFLDH
BO16842.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FoxP-PC | 520 | CG43067-PC | 398..520 | 1..123 | 682 | 100 | Plus |