Clone BO16843 Report

Search the DGRC for BO16843

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptLSm1-RA
Protein status:BO16843.pep: Imported from assembly
Sequenced Size:446

Clone Sequence Records

BO16843.5prime Sequence

444 bp (444 high quality bases) assembled on 2006-10-13

> BO16843.5prime
GAAGTTATCAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTC
ACCTCCTGGAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGA
CGGACTCTGATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGT
GCTGCAACGCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACA
TTCCTCGCGGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGC
GAAATAGACCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGT
CGATGAAATCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGA
AACACCGCCTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTAGAT
GCCAACATAATCAACGAGGACTTCTGCGCAAGCTTTTCTAGACC

BO16843.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4279-PA 414 CG4279-RA 1..411 17..427 2030 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:15:20
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-RA 588 CG4279-RA 78..489 16..427 2045 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 13:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21170300..21170485 257..72 930 100 Minus
2R 25286936 2R 21170068..21170238 427..257 855 100 Minus
2R 25286936 2R 21170540..21170595 71..16 265 98.2 Minus
Blast to na_te.dros performed on 2015-02-06 13:15:16 has no hits.

BO16843.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:42 Download gff for BO16843.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4279-PA 1..414 17..431 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 04:18:26 Download gff for BO16843.5prime
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 69..493 5..432 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:46:25 Download gff for BO16843.5prime
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 69..493 5..432 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:46:25 Download gff for BO16843.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21170064..21170238 257..432 98 <- Minus
2R 21170301..21170485 72..256 100 <- Minus
2R 21170540..21170603 5..71 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 04:18:26 Download gff for BO16843.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17057569..17057743 257..432 98 <- Minus
arm_2R 17057806..17057990 72..256 100 <- Minus
arm_2R 17058045..17058108 5..71 92   Minus

BO16843.complete Sequence

446 bp assembled on 2011-06-28

> BO16843.complete
GAAGTTATCAGTCGACATGGACGACTTAAATCCGCTGGCGGGCACTGCTC
ACCTCCTGGAAGAGGTTGACAAGAAACTGATGGTACTTTTGAGAGACGGA
CGGACTCTGATTGGATACCTGCGGTCCGTGGACCAGTTCGCCAACCTGGT
GCTGCAACGCACCATCGAGCGGATACATGTGGGCAACGAATACGGCGACA
TTCCTCGCGGAGTCTTCATCATTCGCGGGGAGAATGTGGTGCTACTGGGC
GAAATAGACCGTGAAAAGGAGCAGAAACTGCCACTCAAAGAGATATCCGT
CGATGAAATCCTGGACGCCCAGCGTAGGGAACAGGAGCAGCGGCAGGAGA
AACACCGCCTAGTATCCAAGGCACTAAAGGAACGAGGCCTGGCCGTAGAT
GCCAACATAATCAACGAGGACTTCTGCGCAAGCTTTTCTAGACCAT

BO16843.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-RA 414 CG4279-PA 1..411 17..427 2040 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-RA 588 CG4279-RA 78..489 16..427 2045 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21170300..21170485 257..72 930 100 Minus
2R 25286936 2R 21170068..21170238 427..257 855 100 Minus
2R 25286936 2R 21170540..21170595 71..16 265 98.2 Minus
Blast to na_te.dros performed on 2014-11-26 16:05:27 has no hits.

BO16843.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:05 Download gff for BO16843.complete
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 52..462 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:52:04 Download gff for BO16843.complete
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 79..489 17..429 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:59 Download gff for BO16843.complete
Subject Subject Range Query Range Percent Splice Strand
LSm1-RA 79..489 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:59 Download gff for BO16843.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21170301..21170485 72..256 100 <- Minus
2R 21170540..21170594 17..71 98   Minus
2R 21170066..21170238 257..429 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:52:04 Download gff for BO16843.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17057571..17057743 257..429 98 <- Minus
arm_2R 17057806..17057990 72..256 100 <- Minus
arm_2R 17058045..17058099 17..71 98   Minus

BO16843.pep Sequence

Translation from 16 to 445

> BO16843.pep
MDDLNPLAGTAHLLEEVDKKLMVLLRDGRTLIGYLRSVDQFANLVLQRTI
ERIHVGNEYGDIPRGVFIIRGENVVLLGEIDREKEQKLPLKEISVDEILD
AQRREQEQRQEKHRLVSKALKERGLAVDANIINEDFCASFSRP

BO16843.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
LSm1-PA 137 CG4279-PA 1..137 1..137 686 100 Plus