Clone Sequence Records
BO16845.3prime Sequence
479 bp (479 high quality bases) assembled on 2006-10-13
> BO16845.3prime
ATGGTCTAGAAAGCTTGCTGTGGAACTGGGTGGCTCCTCGTTCTCGTTGA
TCCCATAGAACTGGTCGCTGTCGTCGTCATCGAAATCGAAGAAGCCGTCC
TCAGAATCGGAGAAGTCTAGATCAAAATCTGAATCCTCCGACCTAACGGT
AAAGCATCCGTACGTAAGCGGAGTGCCCAGTTCCTGTCCGAATGTTGCAA
CCCCAAAGGCCACATCGTCGCCCACGAAAATTTCATAAAACTCAGAGCCA
AGGCGGTGTTCCTTGAAGTTAAGATATATGCCATGGATGGATTCCAGGTC
TTTAATGAAAATCCTCCCATTTCGAACAACAACGACGGCATGGATATCGG
ACATATTGTCGTAGGTTAGTACCACATTGCAAGCTCCGCTCTTTCCCAGT
AAATGAATACCAGTGTTCAGGTAAACGCGATATCCAGTCATCACGTGCTT
CAGATAATATCCCATGTCGACTGATAACT
BO16845.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32595-PA | 450 | CG32595-RA | 1..447 | 465..19 | 2210 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hog-RA | 611 | CG32595-RA | 79..525 | 465..19 | 2220 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14718359..14718635 | 19..295 | 1370 | 99.6 | Plus |
X | 23542271 | X | 14718693..14718864 | 294..465 | 860 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:39:45 has no hits.
BO16845.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:45 Download gff for
BO16845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32595-PA | 1..450 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:11 Download gff for
BO16845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32595-RA | 79..528 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:27 Download gff for
BO16845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hog-RA | 79..528 | 15..465 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:27 Download gff for
BO16845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14718355..14718634 | 15..294 | 98 | <- | Plus |
X | 14718694..14718864 | 295..465 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:11 Download gff for
BO16845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14612388..14612667 | 15..294 | 98 | <- | Plus |
arm_X | 14612727..14612897 | 295..465 | 100 | | Plus |
BO16845.5prime Sequence
479 bp (479 high quality bases) assembled on 2006-10-13
> BO16845.5prime
GAAGTTATCAGTCGACATGGGATATTATCTGAAGCACGTGATGACTGGAT
ATCGCGTTTACCTGAACACTGGTATTCATTTACTGGGAAAGAGCGGAGCT
TGCAATGTGGTACTAACCTACGACAATATGTCCGATATCCATGCCGTCGT
TGTTGTTCGAAATGGGAGGATTTTCATTAAAGACCTGGAATCCATCCATG
GCATATATCTTAACTTCAAGGAACACCGCCTTGGCTCTGAGTTTTATGAA
ATTTTCGTGGGCGACGATGTGGCCTTTGGGGTTGCAACATTCGGACAGGA
ACTGGGCACTCCGCTTACGTACGGATGCTTTACCGTTAGGTCGGAGGATT
CAGATTTTGATCTAGACTTCTCCGATTCTGAGGACGGCTTCTTCGATTTC
GATGACGACGACAGCGACCAGTTCTATGGGATCAACGAGAACGAGGAGCC
ACCCAGTTCCACAGCAAGCTTTCTAGACC
BO16845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32595-PA | 450 | CG32595-RA | 1..447 | 17..463 | 2210 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hog-RA | 611 | CG32595-RA | 79..525 | 17..463 | 2220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:20:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14718359..14718635 | 463..187 | 1370 | 99.6 | Minus |
X | 23542271 | X | 14718693..14718864 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:20:53 has no hits.
BO16845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:45 Download gff for
BO16845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32595-PA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:42 Download gff for
BO16845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32595-RA | 79..528 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:42 Download gff for
BO16845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hog-RA | 79..528 | 17..467 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:42 Download gff for
BO16845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14718355..14718634 | 188..467 | 98 | <- | Minus |
X | 14718694..14718864 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:42 Download gff for
BO16845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14612388..14612667 | 188..467 | 98 | <- | Minus |
arm_X | 14612727..14612897 | 17..187 | 100 | | Minus |
BO16845.complete Sequence
481 bp assembled on 2006-10-11
GenBank Submission: FJ633942
> BO16845.complete
GAAGTTATCAGTCGACATGGGATATTATCTGAAGCACGTGATGACTGGAT
ATCGCGTTTACCTGAACACTGGTATTCATTTACTGGGAAAGAGCGGAGCT
TGCAATGTGGTACTAACCTACGACAATATGTCCGATATCCATGCCGTCGT
TGTTGTTCGAAATGGGAGGATTTTCATTAAAGACCTGGAATCCATCCATG
GCATATATCTTAACTTCAAGGAACACCGCCTTGGCTCTGAGTTTTATGAA
ATTTTCGTGGGCGACGATGTGGCCTTTGGGGTTGCAACATTCGGACAGGA
ACTGGGCACTCCGCTTACGTACGGATGCTTTACCGTTAGGTCGGAGGATT
CAGATTTTGATCTAGACTTCTCCGATTCTGAGGACGGCTTCTTCGATTTC
GATGACGACGACAGCGACCAGTTCTATGGGATCAACGAGAACGAGGAGCC
ACCCAGTTCCACAGCAAGCTTTCTAGACCAT
BO16845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hog-RA | 450 | CG32595-PA | 1..447 | 17..463 | 2220 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hog-RA | 611 | CG32595-RA | 79..525 | 17..463 | 2220 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14718359..14718635 | 463..187 | 1370 | 99.6 | Minus |
X | 23542271 | X | 14718693..14718864 | 188..17 | 860 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:55:36 has no hits.
BO16845.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:51 Download gff for
BO16845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32595-RA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:36 Download gff for
BO16845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32595-RA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:26 Download gff for
BO16845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32595-RA | 79..525 | 17..465 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:51 Download gff for
BO16845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32595-RA | 1..450 | 17..467 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:35 Download gff for
BO16845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
hog-RA | 79..525 | 17..465 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:35 Download gff for
BO16845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14718357..14718634 | 188..465 | 98 | <- | Minus |
X | 14718694..14718864 | 17..187 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:26 Download gff for
BO16845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14612390..14612667 | 188..465 | 98 | <- | Minus |
arm_X | 14612727..14612897 | 17..187 | 100 | | Minus |
BO16845.pep Sequence
Translation from 16 to 481
> BO16845.pep
MGYYLKHVMTGYRVYLNTGIHLLGKSGACNVVLTYDNMSDIHAVVVVRNG
RIFIKDLESIHGIYLNFKEHRLGSEFYEIFVGDDVAFGVATFGQELGTPL
TYGCFTVRSEDSDFDLDFSDSEDGFFDFDDDDSDQFYGINENEEPPSSTA
SFLDH
BO16845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
hog-PA | 149 | CG32595-PA | 1..149 | 1..149 | 798 | 100 | Plus |
CG34323-PA | 112 | CG34323-PA | 1..110 | 1..109 | 246 | 47.3 | Plus |