Clone BO16845 Report

Search the DGRC for BO16845

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptCG32595-RA
Protein status:BO16845.pep: validated full length
Sequenced Size:481

Clone Sequence Records

BO16845.3prime Sequence

479 bp (479 high quality bases) assembled on 2006-10-13

> BO16845.3prime
ATGGTCTAGAAAGCTTGCTGTGGAACTGGGTGGCTCCTCGTTCTCGTTGA
TCCCATAGAACTGGTCGCTGTCGTCGTCATCGAAATCGAAGAAGCCGTCC
TCAGAATCGGAGAAGTCTAGATCAAAATCTGAATCCTCCGACCTAACGGT
AAAGCATCCGTACGTAAGCGGAGTGCCCAGTTCCTGTCCGAATGTTGCAA
CCCCAAAGGCCACATCGTCGCCCACGAAAATTTCATAAAACTCAGAGCCA
AGGCGGTGTTCCTTGAAGTTAAGATATATGCCATGGATGGATTCCAGGTC
TTTAATGAAAATCCTCCCATTTCGAACAACAACGACGGCATGGATATCGG
ACATATTGTCGTAGGTTAGTACCACATTGCAAGCTCCGCTCTTTCCCAGT
AAATGAATACCAGTGTTCAGGTAAACGCGATATCCAGTCATCACGTGCTT
CAGATAATATCCCATGTCGACTGATAACT

BO16845.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG32595-PA 450 CG32595-RA 1..447 465..19 2210 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
hog-RA 611 CG32595-RA 79..525 465..19 2220 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14718359..14718635 19..295 1370 99.6 Plus
X 23542271 X 14718693..14718864 294..465 860 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:39:45 has no hits.

BO16845.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:45 Download gff for BO16845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32595-PA 1..450 15..465 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:11 Download gff for BO16845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32595-RA 79..528 15..465 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:27 Download gff for BO16845.3prime
Subject Subject Range Query Range Percent Splice Strand
hog-RA 79..528 15..465 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:27 Download gff for BO16845.3prime
Subject Subject Range Query Range Percent Splice Strand
X 14718355..14718634 15..294 98 <- Plus
X 14718694..14718864 295..465 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:11 Download gff for BO16845.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14612388..14612667 15..294 98 <- Plus
arm_X 14612727..14612897 295..465 100   Plus

BO16845.5prime Sequence

479 bp (479 high quality bases) assembled on 2006-10-13

> BO16845.5prime
GAAGTTATCAGTCGACATGGGATATTATCTGAAGCACGTGATGACTGGAT
ATCGCGTTTACCTGAACACTGGTATTCATTTACTGGGAAAGAGCGGAGCT
TGCAATGTGGTACTAACCTACGACAATATGTCCGATATCCATGCCGTCGT
TGTTGTTCGAAATGGGAGGATTTTCATTAAAGACCTGGAATCCATCCATG
GCATATATCTTAACTTCAAGGAACACCGCCTTGGCTCTGAGTTTTATGAA
ATTTTCGTGGGCGACGATGTGGCCTTTGGGGTTGCAACATTCGGACAGGA
ACTGGGCACTCCGCTTACGTACGGATGCTTTACCGTTAGGTCGGAGGATT
CAGATTTTGATCTAGACTTCTCCGATTCTGAGGACGGCTTCTTCGATTTC
GATGACGACGACAGCGACCAGTTCTATGGGATCAACGAGAACGAGGAGCC
ACCCAGTTCCACAGCAAGCTTTCTAGACC

BO16845.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG32595-PA 450 CG32595-RA 1..447 17..463 2210 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
hog-RA 611 CG32595-RA 79..525 17..463 2220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:20:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14718359..14718635 463..187 1370 99.6 Minus
X 23542271 X 14718693..14718864 188..17 860 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:20:53 has no hits.

BO16845.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:45 Download gff for BO16845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32595-PA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:42 Download gff for BO16845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32595-RA 79..528 17..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:42 Download gff for BO16845.5prime
Subject Subject Range Query Range Percent Splice Strand
hog-RA 79..528 17..467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:42 Download gff for BO16845.5prime
Subject Subject Range Query Range Percent Splice Strand
X 14718355..14718634 188..467 98 <- Minus
X 14718694..14718864 17..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:42 Download gff for BO16845.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 14612388..14612667 188..467 98 <- Minus
arm_X 14612727..14612897 17..187 100   Minus

BO16845.complete Sequence

481 bp assembled on 2006-10-11

GenBank Submission: FJ633942

> BO16845.complete
GAAGTTATCAGTCGACATGGGATATTATCTGAAGCACGTGATGACTGGAT
ATCGCGTTTACCTGAACACTGGTATTCATTTACTGGGAAAGAGCGGAGCT
TGCAATGTGGTACTAACCTACGACAATATGTCCGATATCCATGCCGTCGT
TGTTGTTCGAAATGGGAGGATTTTCATTAAAGACCTGGAATCCATCCATG
GCATATATCTTAACTTCAAGGAACACCGCCTTGGCTCTGAGTTTTATGAA
ATTTTCGTGGGCGACGATGTGGCCTTTGGGGTTGCAACATTCGGACAGGA
ACTGGGCACTCCGCTTACGTACGGATGCTTTACCGTTAGGTCGGAGGATT
CAGATTTTGATCTAGACTTCTCCGATTCTGAGGACGGCTTCTTCGATTTC
GATGACGACGACAGCGACCAGTTCTATGGGATCAACGAGAACGAGGAGCC
ACCCAGTTCCACAGCAAGCTTTCTAGACCAT

BO16845.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
hog-RA 450 CG32595-PA 1..447 17..463 2220 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:55:38
Subject Length Description Subject Range Query Range Score Percent Strand
hog-RA 611 CG32595-RA 79..525 17..463 2220 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:55:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14718359..14718635 463..187 1370 99.6 Minus
X 23542271 X 14718693..14718864 188..17 860 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:55:36 has no hits.

BO16845.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:51 Download gff for BO16845.complete
Subject Subject Range Query Range Percent Splice Strand
CG32595-RA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:36 Download gff for BO16845.complete
Subject Subject Range Query Range Percent Splice Strand
CG32595-RA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:34:26 Download gff for BO16845.complete
Subject Subject Range Query Range Percent Splice Strand
CG32595-RA 79..525 17..465 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:51 Download gff for BO16845.complete
Subject Subject Range Query Range Percent Splice Strand
CG32595-RA 1..450 17..467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:40:35 Download gff for BO16845.complete
Subject Subject Range Query Range Percent Splice Strand
hog-RA 79..525 17..465 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:40:35 Download gff for BO16845.complete
Subject Subject Range Query Range Percent Splice Strand
X 14718357..14718634 188..465 98 <- Minus
X 14718694..14718864 17..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:34:26 Download gff for BO16845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14612390..14612667 188..465 98 <- Minus
arm_X 14612727..14612897 17..187 100   Minus

BO16845.pep Sequence

Translation from 16 to 481

> BO16845.pep
MGYYLKHVMTGYRVYLNTGIHLLGKSGACNVVLTYDNMSDIHAVVVVRNG
RIFIKDLESIHGIYLNFKEHRLGSEFYEIFVGDDVAFGVATFGQELGTPL
TYGCFTVRSEDSDFDLDFSDSEDGFFDFDDDDSDQFYGINENEEPPSSTA
SFLDH

BO16845.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
hog-PA 149 CG32595-PA 1..149 1..149 798 100 Plus
CG34323-PA 112 CG34323-PA 1..110 1..109 246 47.3 Plus