Clone BO16846 Report

Search the DGRC for BO16846

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG32639-RA
Protein status:BO16846.pep: validated full length
Sequenced Size:460

Clone Sequence Records

BO16846.3prime Sequence

458 bp (458 high quality bases) assembled on 2006-10-13

> BO16846.3prime
ATGGTCTAGAAAGCTTGCGTGAAAATAATTGGCGAATGCCCTTCGCAACT
TGCCAAAAACGCCAAGTCCACCGGCCGTACTTCGCTCCCTTGATGGCTTG
GGATTAAGGGATGGATCATCCTCCATACGACCCACATGCCAGTGGATCTG
CACGTTGCACACCACCAGACGCTTGGCCATTAGAACGCCCAGCTGCAGAT
GCTCCGCGGTTGCGAATCTCAGCTCTAGACCATTCTTCCTTTTGCGATGC
GCGTTCATCGAACAGAAGCGTGAGAAAATGGCCAGCAATTCATCATCGGT
GCCGGATGGAAATCCGTGCAAGCTCAGCCACTCGTTGCTGGTCAGATCAT
CCGAGGAACCACCGGTTCTGGCCTGCTCCACATCCGGTTCCGGTCCCTCA
TCGCTATCACTTTCAGTTTGGCTCTGAGAACTGTACTCAGTCATGTCGAC
TGATAACT

BO16846.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-PA 429 CG32639-RA 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:06:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-RA 642 CG32639-RA 43..469 445..19 2135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:05:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13236098..13236524 19..445 2135 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:06:00 has no hits.

BO16846.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:47 Download gff for BO16846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-PA 1..429 18..444 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:10:31 Download gff for BO16846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 34..476 10..452 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:42:45 Download gff for BO16846.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 34..476 10..452 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:42:45 Download gff for BO16846.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13236091..13236533 10..452 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:10:31 Download gff for BO16846.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13130124..13130566 10..452 98   Plus

BO16846.5prime Sequence

458 bp (458 high quality bases) assembled on 2006-10-13

> BO16846.5prime
GAAGTTATCAGTCGACATGACTGAGTACAGTTCTCAGAGCCAAACTGAAA
GTGATAGCGATGAGGGACCGGAACCGGATGTGGAGCAGGCCAGAACCGGT
GGTTCCTCGGATGATCTGACCAGCAACGAGTGGCTGAGCTTGCACGGATT
TCCATCCGGCACCGATGATGAATTGCTGGCCATTTTCTCACGCTTCTGTT
CGATGAACGCGCATCGCAAAAGGAAGAATGGTCTAGAGCTGAGATTCGCA
ACCGCGGAGCATCTGCAGCTGGGCGTTCTAATGGCCAAGCGTCTGGTGGT
GTGCAACGTGCAGATCCACTGGCATGTGGGTCGTATGGAGGATGATCCAT
CCCTTAATCCCAAGCCATCAAGGGAGCGAAGTACGGCCGGTGGACTTGGC
GTTTTTGGCAAGTTGCGAAGGGCATTCGCCAATTATTTTCACGCAAGCTT
TCTAGACC

BO16846.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-PA 429 CG32639-RA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:40:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-RA 642 CG32639-RA 43..469 16..442 2135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13236098..13236524 442..16 2135 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:40:05 has no hits.

BO16846.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:48 Download gff for BO16846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-PA 1..429 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:16 Download gff for BO16846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 34..476 9..451 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:30 Download gff for BO16846.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 34..476 9..451 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:30 Download gff for BO16846.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13236091..13236533 9..451 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:16 Download gff for BO16846.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 13130124..13130566 9..451 98   Minus

BO16846.complete Sequence

460 bp assembled on 2006-10-11

GenBank Submission: FJ633943

> BO16846.complete
GAAGTTATCAGTCGACATGACTGAGTACAGTTCTCAGAGCCAAACTGAAA
GTGATAGCGATGAGGGACCGGAACCGGATGTGGAGCAGGCCAGAACCGGT
GGTTCCTCGGATGATCTGACCAGCAACGAGTGGCTGAGCTTGCACGGATT
TCCATCCGGCACCGATGATGAATTGCTGGCCATTTTCTCACGCTTCTGTT
CGATGAACGCGCATCGCAAAAGGAAGAATGGTCTAGAGCTGAGATTCGCA
ACCGCGGAGCATCTGCAGCTGGGCGTTCTAATGGCCAAGCGTCTGGTGGT
GTGCAACGTGCAGATCCACTGGCATGTGGGTCGTATGGAGGATGATCCAT
CCCTTAATCCCAAGCCATCAAGGGAGCGAAGTACGGCCGGTGGACTTGGC
GTTTTTGGCAAGTTGCGAAGGGCATTCGCCAATTATTTTCACGCAAGCTT
TCTAGACCAT

BO16846.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-RA 429 CG32639-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-RA 642 CG32639-RA 43..469 16..442 2135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13236098..13236524 442..16 2135 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:47:39 has no hits.

BO16846.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:26 Download gff for BO16846.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 1..429 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:56 Download gff for BO16846.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 1..429 17..443 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:31:38 Download gff for BO16846.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 44..469 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:27 Download gff for BO16846.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 1..429 17..443 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:02 Download gff for BO16846.complete
Subject Subject Range Query Range Percent Splice Strand
CG32639-RA 44..469 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:02 Download gff for BO16846.complete
Subject Subject Range Query Range Percent Splice Strand
X 13236094..13236523 17..444 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:31:38 Download gff for BO16846.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 13130127..13130556 17..444 99   Minus

BO16846.pep Sequence

Translation from 16 to 460

> BO16846.pep
MTEYSSQSQTESDSDEGPEPDVEQARTGGSSDDLTSNEWLSLHGFPSGTD
DELLAIFSRFCSMNAHRKRKNGLELRFATAEHLQLGVLMAKRLVVCNVQI
HWHVGRMEDDPSLNPKPSRERSTAGGLGVFGKLRRAFANYFHASFLDH

BO16846.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG32639-PA 142 CG32639-PA 1..142 1..142 751 100 Plus