Clone Sequence Records
BO16847.3prime Sequence
353 bp (353 high quality bases) assembled on 2006-10-13
> BO16847.3prime
ATGGTCTAGAAAGCTTGCAACCTTGTAGCCGACCAGGTGACGACGACCGA
TAACCTCGCCCATGTAGAACCAGGTAATCACCTCCACGGTGACCAGAACA
TTTAGCCAGGCCTCAGCGACTGTCACTTGGGAAAGTCCGGACTTCTTTAG
CTGCCCCTTCATATCCTTTTTGGAGGCCAACTTGGCGGACTCAGCGGTCT
GCTTCAGCTTTTGGAAATCAGCGGGCAGCGGCGGTGATAGCTCCACCTTG
GCATACTTCCAGAATTCATCGAGCTGCGGACGTGCTGCCACAATCATTTT
GTTTACTAGGGTCTTTGCCTTGGCAATCAATTGACTCATGTCGACTGATA
ACT
BO16847.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-PA | 324 | CG7211-RA | 1..321 | 339..19 | 1605 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-RA | 547 | CG7211-RA | 107..427 | 339..19 | 1605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7747474..7747754 | 299..19 | 1405 | 100 | Minus |
2L | 23513712 | 2L | 7747381..7747420 | 339..300 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:45:25 has no hits.
BO16847.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:48 Download gff for
BO16847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-PA | 1..324 | 18..339 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:49 Download gff for
BO16847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 100..427 | 19..347 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:48 Download gff for
BO16847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 100..427 | 19..347 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:48 Download gff for
BO16847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7747374..7747420 | 300..347 | 91 | -> | Minus |
2L | 7747474..7747754 | 19..299 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:49 Download gff for
BO16847.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7747374..7747420 | 300..347 | 91 | -> | Minus |
arm_2L | 7747474..7747754 | 19..299 | 100 | | Minus |
BO16847.5prime Sequence
353 bp (353 high quality bases) assembled on 2006-10-13
> BO16847.5prime
GAAGTTATCAGTCGACATGAGTCAATTGATTGCCAAGGCAAAGACCCTAG
TAAACAAAATGATTGTGGCAGCACGTCCGCAGCTCGATGAATTCTGGAAG
TATGCCAAGGTGGAGCTATCACCGCCGCTGCCCGCTGATTTCCAAAAGCT
GAAGCAGACCGCTGAGTCCGCCAAGTTGGCCTCCAAAAAGGATATGAAGG
GGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGG
CTAAATGTTCTGGTCACCGTGGAGGTGATTACCTGGTTCTACATGGGCGA
GGTTATCGGTCGTCGTCACCTGGTCGGCTACAAGGTTGCAAGCTTTCTAG
ACC
BO16847.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-PA | 324 | CG7211-RA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-RA | 547 | CG7211-RA | 107..427 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:44:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7747474..7747754 | 57..337 | 1405 | 100 | Plus |
2L | 23513712 | 2L | 7747381..7747420 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:44:55 has no hits.
BO16847.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:49 Download gff for
BO16847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-PA | 1..324 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:30 Download gff for
BO16847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 100..427 | 9..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:32 Download gff for
BO16847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 100..427 | 9..337 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:32 Download gff for
BO16847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7747374..7747420 | 9..56 | 91 | -> | Plus |
2L | 7747474..7747754 | 57..337 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:30 Download gff for
BO16847.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7747474..7747754 | 57..337 | 100 | | Plus |
arm_2L | 7747374..7747420 | 9..56 | 91 | -> | Plus |
BO16847.complete Sequence
355 bp assembled on 2006-10-11
GenBank Submission: FJ633944
> BO16847.complete
GAAGTTATCAGTCGACATGAGTCAATTGATTGCCAAGGCAAAGACCCTAG
TAAACAAAATGATTGTGGCAGCACGTCCGCAGCTCGATGAATTCTGGAAG
TATGCCAAGGTGGAGCTATCACCGCCGCTGCCCGCTGATTTCCAAAAGCT
GAAGCAGACCGCTGAGTCCGCCAAGTTGGCCTCCAAAAAGGATATGAAGG
GGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGG
CTAAATGTTCTGGTCACCGTGGAGGTGATTACCTGGTTCTACATGGGCGA
GGTTATCGGTCGTCGTCACCTGGTCGGCTACAAGGTTGCAAGCTTTCTAG
ACCAT
BO16847.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-RA | 324 | CG7211-PA | 1..321 | 17..337 | 1605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-RA | 547 | CG7211-RA | 107..427 | 17..337 | 1605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7747474..7747754 | 57..337 | 1405 | 100 | Plus |
2L | 23513712 | 2L | 7747381..7747420 | 17..56 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:57:11 has no hits.
BO16847.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:34 Download gff for
BO16847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 1..324 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:34 Download gff for
BO16847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 32..359 | 9..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:05 Download gff for
BO16847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 107..427 | 17..339 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:34 Download gff for
BO16847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 32..359 | 9..337 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:52 Download gff for
BO16847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7211-RA | 107..427 | 17..339 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:52 Download gff for
BO16847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7747474..7747754 | 57..339 | 99 | | Plus |
2L | 7747381..7747420 | 17..56 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:05 Download gff for
BO16847.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7747381..7747420 | 17..56 | 100 | -> | Plus |
arm_2L | 7747474..7747754 | 57..339 | 99 | | Plus |
BO16847.pep Sequence
Translation from 16 to 355
> BO16847.pep
MSQLIAKAKTLVNKMIVAARPQLDEFWKYAKVELSPPLPADFQKLKQTAE
SAKLASKKDMKGQLKKSGLSQVTVAEAWLNVLVTVEVITWFYMGEVIGRR
HLVGYKVASFLDH
BO16847.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7211-PA | 107 | CG7211-PA | 1..107 | 1..107 | 538 | 100 | Plus |
l(2)06225-PD | 99 | CG6105-PD | 1..99 | 1..107 | 261 | 51.4 | Plus |
l(2)06225-PB | 99 | CG6105-PB | 1..99 | 1..107 | 261 | 51.4 | Plus |
l(2)06225-PA | 99 | CG6105-PA | 1..99 | 1..107 | 261 | 51.4 | Plus |