Clone BO16847 Report

Search the DGRC for BO16847

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG7211-RA
Protein status:BO16847.pep: validated full length
Sequenced Size:355

Clone Sequence Records

BO16847.3prime Sequence

353 bp (353 high quality bases) assembled on 2006-10-13

> BO16847.3prime
ATGGTCTAGAAAGCTTGCAACCTTGTAGCCGACCAGGTGACGACGACCGA
TAACCTCGCCCATGTAGAACCAGGTAATCACCTCCACGGTGACCAGAACA
TTTAGCCAGGCCTCAGCGACTGTCACTTGGGAAAGTCCGGACTTCTTTAG
CTGCCCCTTCATATCCTTTTTGGAGGCCAACTTGGCGGACTCAGCGGTCT
GCTTCAGCTTTTGGAAATCAGCGGGCAGCGGCGGTGATAGCTCCACCTTG
GCATACTTCCAGAATTCATCGAGCTGCGGACGTGCTGCCACAATCATTTT
GTTTACTAGGGTCTTTGCCTTGGCAATCAATTGACTCATGTCGACTGATA
ACT

BO16847.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-PA 324 CG7211-RA 1..321 339..19 1605 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-RA 547 CG7211-RA 107..427 339..19 1605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7747474..7747754 299..19 1405 100 Minus
2L 23513712 2L 7747381..7747420 339..300 200 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:45:25 has no hits.

BO16847.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:48 Download gff for BO16847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-PA 1..324 18..339 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:49 Download gff for BO16847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 100..427 19..347 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:05:48 Download gff for BO16847.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 100..427 19..347 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:05:48 Download gff for BO16847.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7747374..7747420 300..347 91 -> Minus
2L 7747474..7747754 19..299 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:49 Download gff for BO16847.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7747374..7747420 300..347 91 -> Minus
arm_2L 7747474..7747754 19..299 100   Minus

BO16847.5prime Sequence

353 bp (353 high quality bases) assembled on 2006-10-13

> BO16847.5prime
GAAGTTATCAGTCGACATGAGTCAATTGATTGCCAAGGCAAAGACCCTAG
TAAACAAAATGATTGTGGCAGCACGTCCGCAGCTCGATGAATTCTGGAAG
TATGCCAAGGTGGAGCTATCACCGCCGCTGCCCGCTGATTTCCAAAAGCT
GAAGCAGACCGCTGAGTCCGCCAAGTTGGCCTCCAAAAAGGATATGAAGG
GGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGG
CTAAATGTTCTGGTCACCGTGGAGGTGATTACCTGGTTCTACATGGGCGA
GGTTATCGGTCGTCGTCACCTGGTCGGCTACAAGGTTGCAAGCTTTCTAG
ACC

BO16847.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-PA 324 CG7211-RA 1..321 17..337 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-RA 547 CG7211-RA 107..427 17..337 1605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:44:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7747474..7747754 57..337 1405 100 Plus
2L 23513712 2L 7747381..7747420 17..56 200 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:44:55 has no hits.

BO16847.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:49 Download gff for BO16847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-PA 1..324 17..338 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:30 Download gff for BO16847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 100..427 9..337 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:32 Download gff for BO16847.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 100..427 9..337 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:32 Download gff for BO16847.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7747374..7747420 9..56 91 -> Plus
2L 7747474..7747754 57..337 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:30 Download gff for BO16847.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7747474..7747754 57..337 100   Plus
arm_2L 7747374..7747420 9..56 91 -> Plus

BO16847.complete Sequence

355 bp assembled on 2006-10-11

GenBank Submission: FJ633944

> BO16847.complete
GAAGTTATCAGTCGACATGAGTCAATTGATTGCCAAGGCAAAGACCCTAG
TAAACAAAATGATTGTGGCAGCACGTCCGCAGCTCGATGAATTCTGGAAG
TATGCCAAGGTGGAGCTATCACCGCCGCTGCCCGCTGATTTCCAAAAGCT
GAAGCAGACCGCTGAGTCCGCCAAGTTGGCCTCCAAAAAGGATATGAAGG
GGCAGCTAAAGAAGTCCGGACTTTCCCAAGTGACAGTCGCTGAGGCCTGG
CTAAATGTTCTGGTCACCGTGGAGGTGATTACCTGGTTCTACATGGGCGA
GGTTATCGGTCGTCGTCACCTGGTCGGCTACAAGGTTGCAAGCTTTCTAG
ACCAT

BO16847.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-RA 324 CG7211-PA 1..321 17..337 1605 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-RA 547 CG7211-RA 107..427 17..337 1605 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7747474..7747754 57..337 1405 100 Plus
2L 23513712 2L 7747381..7747420 17..56 200 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:57:11 has no hits.

BO16847.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:34 Download gff for BO16847.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 1..324 17..338 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:34 Download gff for BO16847.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 32..359 9..337 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:05 Download gff for BO16847.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 107..427 17..339 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:34 Download gff for BO16847.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 32..359 9..337 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:52 Download gff for BO16847.complete
Subject Subject Range Query Range Percent Splice Strand
CG7211-RA 107..427 17..339 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:52 Download gff for BO16847.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7747474..7747754 57..339 99   Plus
2L 7747381..7747420 17..56 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:05 Download gff for BO16847.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7747381..7747420 17..56 100 -> Plus
arm_2L 7747474..7747754 57..339 99   Plus

BO16847.pep Sequence

Translation from 16 to 355

> BO16847.pep
MSQLIAKAKTLVNKMIVAARPQLDEFWKYAKVELSPPLPADFQKLKQTAE
SAKLASKKDMKGQLKKSGLSQVTVAEAWLNVLVTVEVITWFYMGEVIGRR
HLVGYKVASFLDH

BO16847.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG7211-PA 107 CG7211-PA 1..107 1..107 538 100 Plus
l(2)06225-PD 99 CG6105-PD 1..99 1..107 261 51.4 Plus
l(2)06225-PB 99 CG6105-PB 1..99 1..107 261 51.4 Plus
l(2)06225-PA 99 CG6105-PA 1..99 1..107 261 51.4 Plus