Clone Sequence Records
BO16848.3prime Sequence
374 bp (374 high quality bases) assembled on 2006-10-13
> BO16848.3prime
ATGGTCTAGAAAGCTTGCACCCTTTATGTTAAGAAAAGTATCTTTGGCAT
TCTGAACCACCAAAACGGTGATCTTGGCATCTGGTGTAATGAGCACCTCG
TGATACTTGGTACGAACTCTCAGTAGAGTCAAATTTTGGGCTGGCTCCAT
TTTGGAGAGGAACGCCTGGCACTTCTCCCGCAAATTGTCATATAGACAGG
CGTACTGCAAGCCCTCCTGACGATCCATCGAGGTTTTCACCGGCACACCC
GAGTGATTCATGATCAATATGTCCTCCACGCCGGGTTTCTCCTGCACTTT
GCGAAATACTTCTTCCACGTAACTTTTAGTTCGCTTTGGATCTGTCTCTG
CTTCCTGCATGTCGACTGATAACT
BO16848.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-PA | 345 | CG10822-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-RA | 554 | CG10822-RA | 111..452 | 360..19 | 1710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19951528..19951848 | 339..19 | 1605 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:10:28 has no hits.
BO16848.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:50 Download gff for
BO16848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-PA | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:23 Download gff for
BO16848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 104..459 | 10..367 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:54 Download gff for
BO16848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 104..459 | 10..367 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:54 Download gff for
BO16848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19951528..19951855 | 10..339 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:23 Download gff for
BO16848.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15839033..15839360 | 10..339 | 98 | | Minus |
BO16848.5prime Sequence
374 bp (374 high quality bases) assembled on 2006-10-13
> BO16848.5prime
GAAGTTATCAGTCGACATGCAGGAAGCAGAGACAGATCCAAAGCGAACTA
AAAGTTACGTGGAAGAAGTATTTCGCAAAGTGCAGGAGAAACCCGGCGTG
GAGGACATATTGATCATGAATCACTCGGGTGTGCCGGTGAAAACCTCGAT
GGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGG
AGAAGTGCCAGGCGTTCCTCTCCAAAATGGAGCCAGCCCAAAATTTGACT
CTACTGAGAGTTCGTACCAAGTATCACGAGGTGCTCATTACACCAGATGC
CAAGATCACCGTTTTGGTGGTTCAGAATGCCAAAGATACTTTTCTTAACA
TAAAGGGTGCAAGCTTTCTAGACC
BO16848.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-PA | 345 | CG10822-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-RA | 554 | CG10822-RA | 111..452 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19951528..19951848 | 38..358 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:10:36 has no hits.
BO16848.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:50 Download gff for
BO16848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-PA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:25 Download gff for
BO16848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 104..459 | 10..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:55 Download gff for
BO16848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 104..459 | 10..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:55 Download gff for
BO16848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19951528..19951855 | 38..367 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:25 Download gff for
BO16848.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15839033..15839360 | 38..367 | 98 | | Plus |
BO16848.complete Sequence
376 bp assembled on 2006-10-11
GenBank Submission: FJ633945
> BO16848.complete
GAAGTTATCAGTCGACATGCAGGAAGCAGAGACAGATCCAAAGCGAACTA
AAAGTTACGTGGAAGAAGTATTTCGCAAAGTGCAGGAGAAACCCGGCGTG
GAGGACATATTGATCATGAATCACTCGGGTGTGCCGGTGAAAACCTCGAT
GGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGG
AGAAGTGCCAGGCGTTCCTCTCCAAAATGGAGCCAGCCCAAAATTTGACT
CTACTGAGAGTTCGTACCAAGTATCACGAGGTGCTCATTACACCAGATGC
CAAGATCACCGTTTTGGTGGTTCAGAATGCCAAAGATACTTTTCTTAACA
TAAAGGGTGCAAGCTTTCTAGACCAT
BO16848.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-RA | 345 | CG10822-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-RA | 554 | CG10822-RA | 111..452 | 17..358 | 1710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19951528..19951848 | 38..358 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:28:52 has no hits.
BO16848.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:53 Download gff for
BO16848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:03 Download gff for
BO16848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 16..371 | 10..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:08 Download gff for
BO16848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 111..452 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:53 Download gff for
BO16848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:12 Download gff for
BO16848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10822-RA | 111..452 | 17..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:12 Download gff for
BO16848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19951455..19951475 | 17..37 | 100 | -> | Plus |
2R | 19951528..19951848 | 38..360 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:08 Download gff for
BO16848.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15838960..15838980 | 17..37 | 100 | -> | Plus |
arm_2R | 15839033..15839353 | 38..360 | 99 | | Plus |
BO16848.pep Sequence
Translation from 16 to 376
> BO16848.pep
MQEAETDPKRTKSYVEEVFRKVQEKPGVEDILIMNHSGVPVKTSMDRQEG
LQYACLYDNLREKCQAFLSKMEPAQNLTLLRVRTKYHEVLITPDAKITVL
VVQNAKDTFLNIKGASFLDH
BO16848.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10822-PA | 114 | CG10822-PA | 1..114 | 1..114 | 583 | 100 | Plus |
robls54B-PA | 112 | CG34192-PA | 9..110 | 8..109 | 242 | 45.1 | Plus |
robls54B-PB | 112 | CG34192-PB | 9..110 | 8..109 | 242 | 45.1 | Plus |
robl-PA | 97 | CG10751-PA | 5..97 | 15..107 | 199 | 35.5 | Plus |
CG10834-PA | 97 | CG10834-PA | 5..94 | 15..104 | 159 | 31.1 | Plus |