Clone BO16848 Report

Search the DGRC for BO16848

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG10822-RA
Protein status:BO16848.pep: validated full length
Sequenced Size:376

Clone Sequence Records

BO16848.3prime Sequence

374 bp (374 high quality bases) assembled on 2006-10-13

> BO16848.3prime
ATGGTCTAGAAAGCTTGCACCCTTTATGTTAAGAAAAGTATCTTTGGCAT
TCTGAACCACCAAAACGGTGATCTTGGCATCTGGTGTAATGAGCACCTCG
TGATACTTGGTACGAACTCTCAGTAGAGTCAAATTTTGGGCTGGCTCCAT
TTTGGAGAGGAACGCCTGGCACTTCTCCCGCAAATTGTCATATAGACAGG
CGTACTGCAAGCCCTCCTGACGATCCATCGAGGTTTTCACCGGCACACCC
GAGTGATTCATGATCAATATGTCCTCCACGCCGGGTTTCTCCTGCACTTT
GCGAAATACTTCTTCCACGTAACTTTTAGTTCGCTTTGGATCTGTCTCTG
CTTCCTGCATGTCGACTGATAACT

BO16848.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-PA 345 CG10822-RA 1..342 360..19 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-RA 554 CG10822-RA 111..452 360..19 1710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19951528..19951848 339..19 1605 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:10:28 has no hits.

BO16848.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:50 Download gff for BO16848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-PA 1..345 18..360 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:23 Download gff for BO16848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 104..459 10..367 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:54 Download gff for BO16848.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 104..459 10..367 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:54 Download gff for BO16848.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19951528..19951855 10..339 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:23 Download gff for BO16848.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15839033..15839360 10..339 98   Minus

BO16848.5prime Sequence

374 bp (374 high quality bases) assembled on 2006-10-13

> BO16848.5prime
GAAGTTATCAGTCGACATGCAGGAAGCAGAGACAGATCCAAAGCGAACTA
AAAGTTACGTGGAAGAAGTATTTCGCAAAGTGCAGGAGAAACCCGGCGTG
GAGGACATATTGATCATGAATCACTCGGGTGTGCCGGTGAAAACCTCGAT
GGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGG
AGAAGTGCCAGGCGTTCCTCTCCAAAATGGAGCCAGCCCAAAATTTGACT
CTACTGAGAGTTCGTACCAAGTATCACGAGGTGCTCATTACACCAGATGC
CAAGATCACCGTTTTGGTGGTTCAGAATGCCAAAGATACTTTTCTTAACA
TAAAGGGTGCAAGCTTTCTAGACC

BO16848.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-PA 345 CG10822-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-RA 554 CG10822-RA 111..452 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19951528..19951848 38..358 1605 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:10:36 has no hits.

BO16848.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:50 Download gff for BO16848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-PA 1..345 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:25 Download gff for BO16848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 104..459 10..367 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:55 Download gff for BO16848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 104..459 10..367 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:55 Download gff for BO16848.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19951528..19951855 38..367 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:25 Download gff for BO16848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15839033..15839360 38..367 98   Plus

BO16848.complete Sequence

376 bp assembled on 2006-10-11

GenBank Submission: FJ633945

> BO16848.complete
GAAGTTATCAGTCGACATGCAGGAAGCAGAGACAGATCCAAAGCGAACTA
AAAGTTACGTGGAAGAAGTATTTCGCAAAGTGCAGGAGAAACCCGGCGTG
GAGGACATATTGATCATGAATCACTCGGGTGTGCCGGTGAAAACCTCGAT
GGATCGTCAGGAGGGCTTGCAGTACGCCTGTCTATATGACAATTTGCGGG
AGAAGTGCCAGGCGTTCCTCTCCAAAATGGAGCCAGCCCAAAATTTGACT
CTACTGAGAGTTCGTACCAAGTATCACGAGGTGCTCATTACACCAGATGC
CAAGATCACCGTTTTGGTGGTTCAGAATGCCAAAGATACTTTTCTTAACA
TAAAGGGTGCAAGCTTTCTAGACCAT

BO16848.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-RA 345 CG10822-PA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-RA 554 CG10822-RA 111..452 17..358 1710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19951528..19951848 38..358 1605 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:28:52 has no hits.

BO16848.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:53 Download gff for BO16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 1..345 17..359 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:03 Download gff for BO16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 16..371 10..367 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:08 Download gff for BO16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 111..452 17..360 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:53 Download gff for BO16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 1..345 17..359 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:12 Download gff for BO16848.complete
Subject Subject Range Query Range Percent Splice Strand
CG10822-RA 111..452 17..360 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:12 Download gff for BO16848.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19951455..19951475 17..37 100 -> Plus
2R 19951528..19951848 38..360 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:08 Download gff for BO16848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15838960..15838980 17..37 100 -> Plus
arm_2R 15839033..15839353 38..360 99   Plus

BO16848.pep Sequence

Translation from 16 to 376

> BO16848.pep
MQEAETDPKRTKSYVEEVFRKVQEKPGVEDILIMNHSGVPVKTSMDRQEG
LQYACLYDNLREKCQAFLSKMEPAQNLTLLRVRTKYHEVLITPDAKITVL
VVQNAKDTFLNIKGASFLDH

BO16848.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10822-PA 114 CG10822-PA 1..114 1..114 583 100 Plus
robls54B-PA 112 CG34192-PA 9..110 8..109 242 45.1 Plus
robls54B-PB 112 CG34192-PB 9..110 8..109 242 45.1 Plus
robl-PA 97 CG10751-PA 5..97 15..107 199 35.5 Plus
CG10834-PA 97 CG10834-PA 5..94 15..104 159 31.1 Plus