Clone Sequence Records
BO16852.3prime Sequence
323 bp (323 high quality bases) assembled on 2006-10-13
> BO16852.3prime
ATGGTCTAGAAAGCTTGCGGTGCCTGGATTTTGCACTACAATAATGATGT
AGTTCTCGGAGGGCAGCACAATCACCTCGTGAACCTTGGTGCGCAGACGT
ATTGTCACCAGCTCATTGCTGGCATCCAAATTGGTAATCATTTTGGCCGC
CTTATAAGTTAAGGTGCTGATCAAGGCCGCGTAATGCACGGTCAAGGTGT
ACTCCATGGTGGTCTTGATTGGTATAGCGAACGGGTCCAAAATAATTATG
CCAGAAACATTGGGGTAGTTTTGATAGCGTTTCAGCAAATCCTCGATTTC
CGCGGACATGTCGACTGATAACT
BO16852.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-PA | 294 | CG10834-RA | 1..291 | 309..19 | 1455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-RA | 443 | CG10834-RA | 61..351 | 309..19 | 1455 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22106954..22107244 | 19..309 | 1455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:40:14 has no hits.
BO16852.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:55 Download gff for
BO16852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-PA | 1..294 | 15..309 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:18 Download gff for
BO16852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..335 | 10..309 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:32 Download gff for
BO16852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 61..360 | 10..309 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:32 Download gff for
BO16852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22106945..22107244 | 10..309 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:18 Download gff for
BO16852.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22106945..22107244 | 10..309 | 98 | | Plus |
BO16852.5prime Sequence
323 bp (323 high quality bases) assembled on 2006-10-13
> BO16852.5prime
GAAGTTATCAGTCGACATGTCCGCGGAAATCGAGGATTTGCTGAAACGCT
ATCAAAACTACCCCAATGTTTCTGGCATAATTATTTTGGACCCGTTCGCT
ATACCAATCAAGACCACCATGGAGTACACCTTGACCGTGCATTACGCGGC
CTTGATCAGCACCTTAACTTATAAGGCGGCCAAAATGATTACCAATTTGG
ATGCCAGCAATGAGCTGGTGACAATACGTCTGCGCACCAAGGTTCACGAG
GTGATTGTGCTGCCCTCCGAGAACTACATCATTATTGTAGTGCAAAATCC
AGGCACCGCAAGCTTTCTAGACC
BO16852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-PA | 294 | CG10834-RA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-RA | 443 | CG10834-RA | 61..351 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22106954..22107244 | 307..17 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:45:36 has no hits.
BO16852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:56 Download gff for
BO16852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-PA | 1..294 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:52 Download gff for
BO16852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..335 | 17..316 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:41 Download gff for
BO16852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 61..360 | 17..316 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:41 Download gff for
BO16852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22106945..22107244 | 17..316 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:52 Download gff for
BO16852.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22106945..22107244 | 17..316 | 98 | | Minus |
BO16852.complete Sequence
325 bp assembled on 2006-10-11
GenBank Submission: FJ633946
> BO16852.complete
GAAGTTATCAGTCGACATGTCCGCGGAAATCGAGGATTTGCTGAAACGCT
ATCAAAACTACCCCAATGTTTCTGGCATAATTATTTTGGACCCGTTCGCT
ATACCAATCAAGACCACCATGGAGTACACCTTGACCGTGCATTACGCGGC
CTTGATCAGCACCTTAACTTATAAGGCGGCCAAAATGATTACCAATTTGG
ATGCCAGCAATGAGCTGGTGACAATACGTCTGCGCACCAAGGTTCACGAG
GTGATTGTGCTGCCCTCCGAGAACTACATCATTATTGTAGTGCAAAATCC
AGGCACCGCAAGCTTTCTAGACCAT
BO16852.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-RA | 294 | CG10834-PA | 1..291 | 17..307 | 1455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-RA | 443 | CG10834-RA | 61..351 | 17..307 | 1455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 22106954..22107244 | 307..17 | 1455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:39:53 has no hits.
BO16852.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:14 Download gff for
BO16852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 1..294 | 17..311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:00 Download gff for
BO16852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..335 | 17..316 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:54 Download gff for
BO16852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..326 | 17..309 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:14 Download gff for
BO16852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 36..335 | 17..316 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:41 Download gff for
BO16852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10834-RA | 61..351 | 17..309 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:41 Download gff for
BO16852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 22106952..22107244 | 17..309 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:54 Download gff for
BO16852.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 22106952..22107244 | 17..309 | 99 | | Minus |
BO16852.pep Sequence
Translation from 16 to 325
> BO16852.pep
MSAEIEDLLKRYQNYPNVSGIIILDPFAIPIKTTMEYTLTVHYAALISTL
TYKAAKMITNLDASNELVTIRLRTKVHEVIVLPSENYIIIVVQNPGTASF
LDH
BO16852.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10834-PA | 97 | CG10834-PA | 1..97 | 1..97 | 482 | 100 | Plus |
robl22E-PB | 97 | CG10838-PB | 1..95 | 1..95 | 282 | 53.7 | Plus |
robl22E-PA | 97 | CG10838-PA | 1..95 | 1..95 | 282 | 53.7 | Plus |
robl-PA | 97 | CG10751-PA | 1..95 | 1..95 | 230 | 44.2 | Plus |
CG10822-PA | 114 | CG10822-PA | 15..104 | 5..94 | 159 | 31.1 | Plus |