Clone BO16852 Report

Search the DGRC for BO16852

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG10834-RA
Protein status:BO16852.pep: validated full length
Sequenced Size:325

Clone Sequence Records

BO16852.3prime Sequence

323 bp (323 high quality bases) assembled on 2006-10-13

> BO16852.3prime
ATGGTCTAGAAAGCTTGCGGTGCCTGGATTTTGCACTACAATAATGATGT
AGTTCTCGGAGGGCAGCACAATCACCTCGTGAACCTTGGTGCGCAGACGT
ATTGTCACCAGCTCATTGCTGGCATCCAAATTGGTAATCATTTTGGCCGC
CTTATAAGTTAAGGTGCTGATCAAGGCCGCGTAATGCACGGTCAAGGTGT
ACTCCATGGTGGTCTTGATTGGTATAGCGAACGGGTCCAAAATAATTATG
CCAGAAACATTGGGGTAGTTTTGATAGCGTTTCAGCAAATCCTCGATTTC
CGCGGACATGTCGACTGATAACT

BO16852.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10834-PA 294 CG10834-RA 1..291 309..19 1455 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10834-RA 443 CG10834-RA 61..351 309..19 1455 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22106954..22107244 19..309 1455 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:40:14 has no hits.

BO16852.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:55 Download gff for BO16852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10834-PA 1..294 15..309 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:18 Download gff for BO16852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 36..335 10..309 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:32 Download gff for BO16852.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 61..360 10..309 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:32 Download gff for BO16852.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 22106945..22107244 10..309 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:18 Download gff for BO16852.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22106945..22107244 10..309 98   Plus

BO16852.5prime Sequence

323 bp (323 high quality bases) assembled on 2006-10-13

> BO16852.5prime
GAAGTTATCAGTCGACATGTCCGCGGAAATCGAGGATTTGCTGAAACGCT
ATCAAAACTACCCCAATGTTTCTGGCATAATTATTTTGGACCCGTTCGCT
ATACCAATCAAGACCACCATGGAGTACACCTTGACCGTGCATTACGCGGC
CTTGATCAGCACCTTAACTTATAAGGCGGCCAAAATGATTACCAATTTGG
ATGCCAGCAATGAGCTGGTGACAATACGTCTGCGCACCAAGGTTCACGAG
GTGATTGTGCTGCCCTCCGAGAACTACATCATTATTGTAGTGCAAAATCC
AGGCACCGCAAGCTTTCTAGACC

BO16852.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10834-PA 294 CG10834-RA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG10834-RA 443 CG10834-RA 61..351 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22106954..22107244 307..17 1455 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:45:36 has no hits.

BO16852.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:56 Download gff for BO16852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10834-PA 1..294 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:52 Download gff for BO16852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 36..335 17..316 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:06:41 Download gff for BO16852.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 61..360 17..316 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:06:41 Download gff for BO16852.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 22106945..22107244 17..316 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:52 Download gff for BO16852.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22106945..22107244 17..316 98   Minus

BO16852.complete Sequence

325 bp assembled on 2006-10-11

GenBank Submission: FJ633946

> BO16852.complete
GAAGTTATCAGTCGACATGTCCGCGGAAATCGAGGATTTGCTGAAACGCT
ATCAAAACTACCCCAATGTTTCTGGCATAATTATTTTGGACCCGTTCGCT
ATACCAATCAAGACCACCATGGAGTACACCTTGACCGTGCATTACGCGGC
CTTGATCAGCACCTTAACTTATAAGGCGGCCAAAATGATTACCAATTTGG
ATGCCAGCAATGAGCTGGTGACAATACGTCTGCGCACCAAGGTTCACGAG
GTGATTGTGCTGCCCTCCGAGAACTACATCATTATTGTAGTGCAAAATCC
AGGCACCGCAAGCTTTCTAGACCAT

BO16852.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:39:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10834-RA 294 CG10834-PA 1..291 17..307 1455 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:39:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG10834-RA 443 CG10834-RA 61..351 17..307 1455 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:39:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 22106954..22107244 307..17 1455 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:39:53 has no hits.

BO16852.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:14 Download gff for BO16852.complete
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 1..294 17..311 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:00 Download gff for BO16852.complete
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 36..335 17..316 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:54 Download gff for BO16852.complete
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 36..326 17..309 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:14 Download gff for BO16852.complete
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 36..335 17..316 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:41 Download gff for BO16852.complete
Subject Subject Range Query Range Percent Splice Strand
CG10834-RA 61..351 17..309 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:41 Download gff for BO16852.complete
Subject Subject Range Query Range Percent Splice Strand
2L 22106952..22107244 17..309 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:54 Download gff for BO16852.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 22106952..22107244 17..309 99   Minus

BO16852.pep Sequence

Translation from 16 to 325

> BO16852.pep
MSAEIEDLLKRYQNYPNVSGIIILDPFAIPIKTTMEYTLTVHYAALISTL
TYKAAKMITNLDASNELVTIRLRTKVHEVIVLPSENYIIIVVQNPGTASF
LDH

BO16852.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10834-PA 97 CG10834-PA 1..97 1..97 482 100 Plus
robl22E-PB 97 CG10838-PB 1..95 1..95 282 53.7 Plus
robl22E-PA 97 CG10838-PA 1..95 1..95 282 53.7 Plus
robl-PA 97 CG10751-PA 1..95 1..95 230 44.2 Plus
CG10822-PA 114 CG10822-PA 15..104 5..94 159 31.1 Plus