Clone BO16854 Report

Search the DGRC for BO16854

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG13314-RA
Protein status:BO16854.pep: validated full length
Sequenced Size:412

Clone Sequence Records

BO16854.3prime Sequence

410 bp (410 high quality bases) assembled on 2006-10-13

> BO16854.3prime
ATGGTCTAGAAAGCTTGCTCTGCTACTCAGATAGCCGGCGTTCTTGAAGA
GCTTGTACACCTGTTCGCGCGGTATTTTCTCCGCCTCACGATGTACCACT
GCCATTTCCTTCTTCGTGAGCAGTGATTCCTTGGCCAGATTGGCAGCGAT
CACGGGATCATTGTAGAACCGCGCACTCTTCGACAGCTCAGCCGGCAACT
CAGACTCCCACTGGGCATTTCGCACCACCGAGGGATGGGCATCGGCTGTT
GCATATCCCTGGTACGGATTGGCCGGTTCGTAAGCGTGCGCAACCGGCAG
ACCCAGCGCCTGGTGGTAGAAGAACTGGGCCCGAACCGAACTCATGGCCA
GAAGCAGGCATCCAGCGAGCAGCGTTACTTGGCAGGCGGTCGGCATGTCG
ACTGATAACT

BO16854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG13314-PA 381 CG13314-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RA 2669 CG5288-RA 1781..2159 19..397 1895 100 Plus
CG13314-RB 593 CG13314-RB 103..481 397..19 1895 100 Minus
CG13314-RA 789 CG13314-RA 299..677 397..19 1895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8982722..8983100 397..19 1895 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:31:50 has no hits.

BO16854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:56 Download gff for BO16854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-PA 1..381 18..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:33 Download gff for BO16854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..677 19..404 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:24 Download gff for BO16854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..677 19..404 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:24 Download gff for BO16854.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8982714..8983100 19..404 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:33 Download gff for BO16854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8975814..8976200 19..404 99   Minus

BO16854.5prime Sequence

410 bp (410 high quality bases) assembled on 2006-10-13

> BO16854.5prime
GAAGTTATCAGTCGACATGCCGACCGCCTGCCAAGTAACGCTGCTCGCTG
GATGCCTGCTTCTGGCCATGAGTTCGGTTCGGGCCCAGTTCTTCTACCAC
CAGGCGCTGGGTCTGCCGGTTGCGCACGCTTACGAACCGGCCAATCCGTA
CCAGGGATATGCAACAGCCGATGCCCATCCCTCGGTGGTGCGAAATGCCC
AGTGGGAGTCTGAGTTGCCGGCTGAGCTGTCGAAGAGTGCGCGGTTCTAC
AATGATCCCGTGATCGCTGCCAATCTGGCCAAGGAATCACTGCTCACGAA
GAAGGAAATGGCAGTGGTACATCGTGAGGCGGAGAAAATACCGCGCGAAC
AGGTGTACAAGCTCTTCAAGAACGCCGGCTATCTGAGTAGCAGAGCAAGC
TTTCTAGACC

BO16854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG13314-PA 381 CG13314-RA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:21:21
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RA 2669 CG5288-RA 1781..2159 394..16 1895 100 Minus
CG13314-RB 593 CG13314-RB 103..481 16..394 1895 100 Plus
CG13314-RA 789 CG13314-RA 299..677 16..394 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8982722..8983100 16..394 1895 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:21:17 has no hits.

BO16854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:57 Download gff for BO16854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-PA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:46 Download gff for BO16854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..677 9..394 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:46 Download gff for BO16854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 291..677 9..394 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:46 Download gff for BO16854.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8982714..8983100 9..394 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:46 Download gff for BO16854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8975814..8976200 9..394 99   Plus

BO16854.complete Sequence

412 bp assembled on 2006-10-11

GenBank Submission: FJ633947

> BO16854.complete
GAAGTTATCAGTCGACATGCCGACCGCCTGCCAAGTAACGCTGCTCGCTG
GATGCCTGCTTCTGGCCATGAGTTCGGTTCGGGCCCAGTTCTTCTACCAC
CAGGCGCTGGGTCTGCCGGTTGCGCACGCTTACGAACCGGCCAATCCGTA
CCAGGGATATGCAACAGCCGATGCCCATCCCTCGGTGGTGCGAAATGCCC
AGTGGGAGTCTGAGTTGCCGGCTGAGCTGTCGAAGAGTGCGCGGTTCTAC
AATGATCCCGTGATCGCTGCCAATCTGGCCAAGGAATCACTGCTCACGAA
GAAGGAAATGGCAGTGGTACATCGTGAGGCGGAGAAAATACCGCGCGAAC
AGGTGTACAAGCTCTTCAAGAACGCCGGCTATCTGAGTAGCAGAGCAAGC
TTTCTAGACCAT

BO16854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG13314-RB 381 CG13314-PB 1..378 17..394 1890 100 Plus
CG13314-RA 381 CG13314-PA 1..378 17..394 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Galk-RA 2669 CG5288-RA 1781..2159 394..16 1895 100 Minus
CG13314-RB 593 CG13314-RB 103..481 16..394 1895 100 Plus
CG13314-RA 789 CG13314-RA 299..677 16..394 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8982722..8983100 16..394 1895 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:47:45 has no hits.

BO16854.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:05 Download gff for BO16854.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:40 Download gff for BO16854.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 300..677 17..396 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:54 Download gff for BO16854.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 1..381 17..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:42 Download gff for BO16854.complete
Subject Subject Range Query Range Percent Splice Strand
CG13314-RA 300..677 17..396 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:42 Download gff for BO16854.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8982723..8983100 17..396 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:40 Download gff for BO16854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8975823..8976200 17..396 99   Plus

BO16854.pep Sequence

Translation from 16 to 412

> BO16854.pep
MPTACQVTLLAGCLLLAMSSVRAQFFYHQALGLPVAHAYEPANPYQGYAT
ADAHPSVVRNAQWESELPAELSKSARFYNDPVIAANLAKESLLTKKEMAV
VHREAEKIPREQVYKLFKNAGYLSSRASFLDH

BO16854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG13314-PB 126 CG13314-PB 1..126 1..126 647 100 Plus
CG13314-PA 126 CG13314-PA 1..126 1..126 647 100 Plus