Clone Sequence Records
BO16854.3prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO16854.3prime
ATGGTCTAGAAAGCTTGCTCTGCTACTCAGATAGCCGGCGTTCTTGAAGA
GCTTGTACACCTGTTCGCGCGGTATTTTCTCCGCCTCACGATGTACCACT
GCCATTTCCTTCTTCGTGAGCAGTGATTCCTTGGCCAGATTGGCAGCGAT
CACGGGATCATTGTAGAACCGCGCACTCTTCGACAGCTCAGCCGGCAACT
CAGACTCCCACTGGGCATTTCGCACCACCGAGGGATGGGCATCGGCTGTT
GCATATCCCTGGTACGGATTGGCCGGTTCGTAAGCGTGCGCAACCGGCAG
ACCCAGCGCCTGGTGGTAGAAGAACTGGGCCCGAACCGAACTCATGGCCA
GAAGCAGGCATCCAGCGAGCAGCGTTACTTGGCAGGCGGTCGGCATGTCG
ACTGATAACT
BO16854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13314-PA | 381 | CG13314-RA | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galk-RA | 2669 | CG5288-RA | 1781..2159 | 19..397 | 1895 | 100 | Plus |
CG13314-RB | 593 | CG13314-RB | 103..481 | 397..19 | 1895 | 100 | Minus |
CG13314-RA | 789 | CG13314-RA | 299..677 | 397..19 | 1895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:31:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8982722..8983100 | 397..19 | 1895 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:31:50 has no hits.
BO16854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:56 Download gff for
BO16854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-PA | 1..381 | 18..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:33 Download gff for
BO16854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-RA | 291..677 | 19..404 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:24 Download gff for
BO16854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-RA | 291..677 | 19..404 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:24 Download gff for
BO16854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8982714..8983100 | 19..404 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:33 Download gff for
BO16854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8975814..8976200 | 19..404 | 99 | | Minus |
BO16854.5prime Sequence
410 bp (410 high quality bases) assembled on 2006-10-13
> BO16854.5prime
GAAGTTATCAGTCGACATGCCGACCGCCTGCCAAGTAACGCTGCTCGCTG
GATGCCTGCTTCTGGCCATGAGTTCGGTTCGGGCCCAGTTCTTCTACCAC
CAGGCGCTGGGTCTGCCGGTTGCGCACGCTTACGAACCGGCCAATCCGTA
CCAGGGATATGCAACAGCCGATGCCCATCCCTCGGTGGTGCGAAATGCCC
AGTGGGAGTCTGAGTTGCCGGCTGAGCTGTCGAAGAGTGCGCGGTTCTAC
AATGATCCCGTGATCGCTGCCAATCTGGCCAAGGAATCACTGCTCACGAA
GAAGGAAATGGCAGTGGTACATCGTGAGGCGGAGAAAATACCGCGCGAAC
AGGTGTACAAGCTCTTCAAGAACGCCGGCTATCTGAGTAGCAGAGCAAGC
TTTCTAGACC
BO16854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13314-PA | 381 | CG13314-RA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:21:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galk-RA | 2669 | CG5288-RA | 1781..2159 | 394..16 | 1895 | 100 | Minus |
CG13314-RB | 593 | CG13314-RB | 103..481 | 16..394 | 1895 | 100 | Plus |
CG13314-RA | 789 | CG13314-RA | 299..677 | 16..394 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8982722..8983100 | 16..394 | 1895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:21:17 has no hits.
BO16854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:57 Download gff for
BO16854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-PA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:40:46 Download gff for
BO16854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-RA | 291..677 | 9..394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:46 Download gff for
BO16854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-RA | 291..677 | 9..394 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:46 Download gff for
BO16854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8982714..8983100 | 9..394 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:40:46 Download gff for
BO16854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8975814..8976200 | 9..394 | 99 | | Plus |
BO16854.complete Sequence
412 bp assembled on 2006-10-11
GenBank Submission: FJ633947
> BO16854.complete
GAAGTTATCAGTCGACATGCCGACCGCCTGCCAAGTAACGCTGCTCGCTG
GATGCCTGCTTCTGGCCATGAGTTCGGTTCGGGCCCAGTTCTTCTACCAC
CAGGCGCTGGGTCTGCCGGTTGCGCACGCTTACGAACCGGCCAATCCGTA
CCAGGGATATGCAACAGCCGATGCCCATCCCTCGGTGGTGCGAAATGCCC
AGTGGGAGTCTGAGTTGCCGGCTGAGCTGTCGAAGAGTGCGCGGTTCTAC
AATGATCCCGTGATCGCTGCCAATCTGGCCAAGGAATCACTGCTCACGAA
GAAGGAAATGGCAGTGGTACATCGTGAGGCGGAGAAAATACCGCGCGAAC
AGGTGTACAAGCTCTTCAAGAACGCCGGCTATCTGAGTAGCAGAGCAAGC
TTTCTAGACCAT
BO16854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13314-RB | 381 | CG13314-PB | 1..378 | 17..394 | 1890 | 100 | Plus |
CG13314-RA | 381 | CG13314-PA | 1..378 | 17..394 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Galk-RA | 2669 | CG5288-RA | 1781..2159 | 394..16 | 1895 | 100 | Minus |
CG13314-RB | 593 | CG13314-RB | 103..481 | 16..394 | 1895 | 100 | Plus |
CG13314-RA | 789 | CG13314-RA | 299..677 | 16..394 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8982722..8983100 | 16..394 | 1895 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:45 has no hits.
BO16854.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:05 Download gff for
BO16854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-RA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:54:40 Download gff for
BO16854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-RA | 300..677 | 17..396 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:54 Download gff for
BO16854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-RA | 1..381 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:26:42 Download gff for
BO16854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13314-RA | 300..677 | 17..396 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:26:42 Download gff for
BO16854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8982723..8983100 | 17..396 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:54:40 Download gff for
BO16854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8975823..8976200 | 17..396 | 99 | | Plus |
BO16854.pep Sequence
Translation from 16 to 412
> BO16854.pep
MPTACQVTLLAGCLLLAMSSVRAQFFYHQALGLPVAHAYEPANPYQGYAT
ADAHPSVVRNAQWESELPAELSKSARFYNDPVIAANLAKESLLTKKEMAV
VHREAEKIPREQVYKLFKNAGYLSSRASFLDH
BO16854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13314-PB | 126 | CG13314-PB | 1..126 | 1..126 | 647 | 100 | Plus |
CG13314-PA | 126 | CG13314-PA | 1..126 | 1..126 | 647 | 100 | Plus |