Clone Sequence Records
BO16855.5prime Sequence
332 bp (332 high quality bases) assembled on 2006-10-13
> BO16855.5prime
NAANTTATCACTCNACATGCATTATCAACACTATTTACAAAATGANCTNA
CCATTTTCCACTACCACCTACTCTTCNACTATANATCACCCATCCNACTG
TCCACTTTCATTGCCTTCGGCGTCGTCTGCGGCTGGATAATGAGCCTGAT
CACATTCGTTGTCTACAAGGCAGCAATTGGCCTGGGCGCCAAAGCCACGG
CATGTGACAACGATGATAAGTACGATGATCTCGACCTGGACATGCATGGG
GAGTATGGGTATGACCGGATGTTGTCCCAGTGCCAGGACCTTAGTGATTG
GCTTGTGAGGACACAGGCAAGCTTTCTAGACC
BO16855.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13984-PA | 303 | CG13984-RA | 86..300 | 102..316 | 1050 | 99.5 | Plus |
| CG13984-PA | 303 | CG13984-RA | 7..66 | 23..82 | 168 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13984-RA | 657 | CG13984-RA | 55..348 | 23..316 | 1265 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6308873..6309166 | 23..316 | 1265 | 94.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:37:58 has no hits.
BO16855.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:57:58 Download gff for
BO16855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13984-PA | 1..303 | 17..317 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:56 Download gff for
BO16855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13984-RA | 49..354 | 17..324 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:58:49 Download gff for
BO16855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13984-RA | 49..354 | 17..324 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:58:49 Download gff for
BO16855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6308891..6309172 | 41..324 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:56 Download gff for
BO16855.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6308891..6309172 | 41..324 | 94 | | Plus |
BO16855.complete Sequence
334 bp assembled on 2006-10-11
GenBank Submission: FJ633948
> BO16855.complete
GAAGTTATCAGTCGACATGGAGTATCAGCACTATTTGCAGAATGAGCTGA
CCATTTTCCACTACCACCTACTCTTCGACTATGGAGCACCGATCCAGGTG
GCCACTTGCATTGCCTTCGGCGTCGTCTGCGGCTGGATAATGAGCCTGAT
CACATTCGTTGTCTACAAGGCAGCAATTGGCCTGGGCGCCAAAGCCACGG
CATGTGACAACGATGATAAGTACGATGATCTCGACCTGGACATGCATGGG
GAGTATGGGTATGACCGGATGTTGTCCCAGTGCCAGGACCTTAGTGATTG
GCTTGTGAGGACACAGGCAAGCTTTCTAGACCAT
BO16855.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:44:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13984-RA | 303 | CG13984-PA | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13984-RA | 657 | CG13984-RA | 49..348 | 17..316 | 1500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6308867..6309166 | 17..316 | 1500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:44:19 has no hits.
BO16855.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:02 Download gff for
BO16855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13984-RA | 1..303 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:45 Download gff for
BO16855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13984-RA | 1..303 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:42 Download gff for
BO16855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13984-RA | 49..348 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:04 Download gff for
BO16855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13984-RA | 1..303 | 17..317 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:07:23 Download gff for
BO16855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13984-RA | 49..348 | 17..318 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:07:23 Download gff for
BO16855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6308867..6309166 | 17..318 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:42 Download gff for
BO16855.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6308867..6309166 | 17..318 | 99 | | Plus |
BO16855.pep Sequence
Translation from 16 to 334
> BO16855.pep
MEYQHYLQNELTIFHYHLLFDYGAPIQVATCIAFGVVCGWIMSLITFVVY
KAAIGLGAKATACDNDDKYDDLDLDMHGEYGYDRMLSQCQDLSDWLVRTQ
ASFLDH
BO16855.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13984-PA | 100 | CG13984-PA | 1..100 | 1..100 | 548 | 100 | Plus |
