Clone BO16858 Report

Search the DGRC for BO16858

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:58
Vector:pDNR-Dual
Associated Gene/TranscriptCG13428-RA
Protein status:BO16858.pep: validated full length
Sequenced Size:376

Clone Sequence Records

BO16858.3prime Sequence

374 bp (374 high quality bases) assembled on 2006-10-13

> BO16858.3prime
ATGGTCTAGAAAGCTTGCGAGAAGGAACTGGGGTGGTGGTGGAAGGCCGT
CCGGCGGTGGTGGCATTCCAGGTGGAGCCTGACGACGTTGTCTGAACTGC
GGCGGTGGTGGAGGATCATCATTGGCCACGAGCTTGTCCTCCAATGTATC
ACGACGGGATCGGAATTTCGGAGGTGGAGGCGGTTCGTTGCCGTGAAGAA
GGGCGGTTTTCATTGCGGGGACATGGCGCCTTGCCCGCCTGAACAAACCG
ACGAACTTTGGTTCCTCCACTCCATTTGTGGTGCCCCCACCACGTCCATC
GACTCCGAAGAGGGTCAGAGCCACAACGTAAATAACCAAAACAACGCAGA
GTAGCTTCATGTCGACTGATAACT

BO16858.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-PA 345 CG13428-RA 1..342 360..19 1710 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 482 CG13428-RA 48..389 360..19 1710 100 Minus
CG13428-RB 407 CG13428-RB 174..314 159..19 705 100 Minus
CG13428-RB 407 CG13428-RB 48..173 360..235 630 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20540305..20540401 264..360 485 100 Plus
2R 25286936 2R 20539965..20540040 160..235 380 100 Plus
2R 25286936 2R 20539605..20539676 19..90 360 100 Plus
2R 25286936 2R 20539745..20539813 91..159 345 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:50:03 has no hits.

BO16858.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:01 Download gff for BO16858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-PA 1..345 15..360 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:50 Download gff for BO16858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..394 14..373 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:34 Download gff for BO16858.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..394 14..373 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:34 Download gff for BO16858.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20539600..20539676 14..90 97 <- Plus
2R 20539745..20539813 91..159 100 <- Plus
2R 20539965..20540039 160..234 100 <- Plus
2R 20540221..20540250 235..264 100 <- Plus
2R 20540306..20540395 265..354 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:50 Download gff for BO16858.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16427250..16427318 91..159 100 <- Plus
arm_2R 16427470..16427544 160..234 100 <- Plus
arm_2R 16427726..16427755 235..264 100 <- Plus
arm_2R 16427105..16427181 14..90 97 <- Plus
arm_2R 16427811..16427900 265..354 100 <- Plus

BO16858.5prime Sequence

374 bp (374 high quality bases) assembled on 2006-10-13

> BO16858.5prime
GAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACG
TTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACA
AATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCG
CCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTC
CACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTG
GCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGC
TCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGT
TCCTTCTCGCAAGCTTTCTAGACC

BO16858.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-PA 345 CG13428-RA 1..342 17..358 1710 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 482 CG13428-RA 48..389 17..358 1710 100 Plus
CG13428-RB 407 CG13428-RB 174..314 218..358 705 100 Plus
CG13428-RB 407 CG13428-RB 48..173 17..142 630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20540305..20540401 113..17 485 100 Minus
2R 25286936 2R 20539965..20540040 217..142 380 100 Minus
2R 25286936 2R 20539605..20539676 358..287 360 100 Minus
2R 25286936 2R 20539745..20539813 286..218 345 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:25:11 has no hits.

BO16858.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:02 Download gff for BO16858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-PA 1..345 17..362 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:57 Download gff for BO16858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..394 4..363 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:36 Download gff for BO16858.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..394 4..363 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:36 Download gff for BO16858.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20539600..20539676 287..363 97 <- Minus
2R 20539745..20539813 218..286 100 <- Minus
2R 20539965..20540039 143..217 100 <- Minus
2R 20540221..20540250 113..142 100 <- Minus
2R 20540306..20540395 23..112 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:57 Download gff for BO16858.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16427250..16427318 218..286 100 <- Minus
arm_2R 16427470..16427544 143..217 100 <- Minus
arm_2R 16427726..16427755 113..142 100 <- Minus
arm_2R 16427811..16427900 23..112 100 <- Minus
arm_2R 16427105..16427181 287..363 97 <- Minus

BO16858.complete Sequence

376 bp assembled on 2006-10-11

GenBank Submission: FJ633949

> BO16858.complete
GAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACG
TTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACA
AATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCG
CCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTC
CACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTG
GCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGC
TCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGT
TCCTTCTCGCAAGCTTTCTAGACCAT

BO16858.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 345 CG13428-PA 1..342 17..358 1710 100 Plus
CG13428-RB 270 CG13428-PB 127..267 218..358 705 100 Plus
CG13428-RB 270 CG13428-PB 1..126 17..142 630 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-RA 482 CG13428-RA 48..389 17..358 1710 100 Plus
CG13428-RB 407 CG13428-RB 174..314 218..358 705 100 Plus
CG13428-RB 407 CG13428-RB 48..173 17..142 630 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20540305..20540401 113..17 485 100 Minus
2R 25286936 2R 20539965..20540040 217..142 380 100 Minus
2R 25286936 2R 20539605..20539676 358..287 360 100 Minus
2R 25286936 2R 20539745..20539813 286..218 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:47:09 has no hits.

BO16858.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:51 Download gff for BO16858.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 1..345 17..362 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:59 Download gff for BO16858.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..394 4..363 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:16 Download gff for BO16858.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 48..389 17..360 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:51 Download gff for BO16858.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 34..394 4..363 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:46 Download gff for BO16858.complete
Subject Subject Range Query Range Percent Splice Strand
CG13428-RA 48..389 17..360 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:46 Download gff for BO16858.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20539603..20539676 287..360 97 <- Minus
2R 20539745..20539813 218..286 100 <- Minus
2R 20539965..20540039 143..217 100 <- Minus
2R 20540221..20540250 113..142 100 <- Minus
2R 20540306..20540401 17..112 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:16 Download gff for BO16858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16427108..16427181 287..360 97 <- Minus
arm_2R 16427250..16427318 218..286 100 <- Minus
arm_2R 16427470..16427544 143..217 100 <- Minus
arm_2R 16427726..16427755 113..142 100 <- Minus
arm_2R 16427811..16427906 17..112 100   Minus

BO16858.pep Sequence

Translation from 16 to 376

> BO16858.pep
MKLLCVVLVIYVVALTLFGVDGRGGGTTNGVEEPKFVGLFRRARRHVPAM
KTALLHGNEPPPPPKFRSRRDTLEDKLVANDDPPPPPQFRQRRQAPPGMP
PPPDGLPPPPQFLLASFLDH

BO16858.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13428-PA 114 CG13428-PA 1..114 1..114 620 100 Plus
CG13428-PB 89 CG13428-PB 1..89 1..114 444 78.1 Plus