Clone Sequence Records
BO16858.3prime Sequence
374 bp (374 high quality bases) assembled on 2006-10-13
> BO16858.3prime
ATGGTCTAGAAAGCTTGCGAGAAGGAACTGGGGTGGTGGTGGAAGGCCGT
CCGGCGGTGGTGGCATTCCAGGTGGAGCCTGACGACGTTGTCTGAACTGC
GGCGGTGGTGGAGGATCATCATTGGCCACGAGCTTGTCCTCCAATGTATC
ACGACGGGATCGGAATTTCGGAGGTGGAGGCGGTTCGTTGCCGTGAAGAA
GGGCGGTTTTCATTGCGGGGACATGGCGCCTTGCCCGCCTGAACAAACCG
ACGAACTTTGGTTCCTCCACTCCATTTGTGGTGCCCCCACCACGTCCATC
GACTCCGAAGAGGGTCAGAGCCACAACGTAAATAACCAAAACAACGCAGA
GTAGCTTCATGTCGACTGATAACT
BO16858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-PA | 345 | CG13428-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-RA | 482 | CG13428-RA | 48..389 | 360..19 | 1710 | 100 | Minus |
CG13428-RB | 407 | CG13428-RB | 174..314 | 159..19 | 705 | 100 | Minus |
CG13428-RB | 407 | CG13428-RB | 48..173 | 360..235 | 630 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:49:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20540305..20540401 | 264..360 | 485 | 100 | Plus |
2R | 25286936 | 2R | 20539965..20540040 | 160..235 | 380 | 100 | Plus |
2R | 25286936 | 2R | 20539605..20539676 | 19..90 | 360 | 100 | Plus |
2R | 25286936 | 2R | 20539745..20539813 | 91..159 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:50:03 has no hits.
BO16858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:01 Download gff for
BO16858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-PA | 1..345 | 15..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:50 Download gff for
BO16858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..394 | 14..373 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:34 Download gff for
BO16858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..394 | 14..373 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:34 Download gff for
BO16858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20539600..20539676 | 14..90 | 97 | <- | Plus |
2R | 20539745..20539813 | 91..159 | 100 | <- | Plus |
2R | 20539965..20540039 | 160..234 | 100 | <- | Plus |
2R | 20540221..20540250 | 235..264 | 100 | <- | Plus |
2R | 20540306..20540395 | 265..354 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:50 Download gff for
BO16858.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16427250..16427318 | 91..159 | 100 | <- | Plus |
arm_2R | 16427470..16427544 | 160..234 | 100 | <- | Plus |
arm_2R | 16427726..16427755 | 235..264 | 100 | <- | Plus |
arm_2R | 16427105..16427181 | 14..90 | 97 | <- | Plus |
arm_2R | 16427811..16427900 | 265..354 | 100 | <- | Plus |
BO16858.5prime Sequence
374 bp (374 high quality bases) assembled on 2006-10-13
> BO16858.5prime
GAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACG
TTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACA
AATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCG
CCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTC
CACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTG
GCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGC
TCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGT
TCCTTCTCGCAAGCTTTCTAGACC
BO16858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-PA | 345 | CG13428-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-RA | 482 | CG13428-RA | 48..389 | 17..358 | 1710 | 100 | Plus |
CG13428-RB | 407 | CG13428-RB | 174..314 | 218..358 | 705 | 100 | Plus |
CG13428-RB | 407 | CG13428-RB | 48..173 | 17..142 | 630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20540305..20540401 | 113..17 | 485 | 100 | Minus |
2R | 25286936 | 2R | 20539965..20540040 | 217..142 | 380 | 100 | Minus |
2R | 25286936 | 2R | 20539605..20539676 | 358..287 | 360 | 100 | Minus |
2R | 25286936 | 2R | 20539745..20539813 | 286..218 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:25:11 has no hits.
BO16858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:02 Download gff for
BO16858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-PA | 1..345 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:57 Download gff for
BO16858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..394 | 4..363 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:36 Download gff for
BO16858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..394 | 4..363 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:36 Download gff for
BO16858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20539600..20539676 | 287..363 | 97 | <- | Minus |
2R | 20539745..20539813 | 218..286 | 100 | <- | Minus |
2R | 20539965..20540039 | 143..217 | 100 | <- | Minus |
2R | 20540221..20540250 | 113..142 | 100 | <- | Minus |
2R | 20540306..20540395 | 23..112 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:57 Download gff for
BO16858.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16427250..16427318 | 218..286 | 100 | <- | Minus |
arm_2R | 16427470..16427544 | 143..217 | 100 | <- | Minus |
arm_2R | 16427726..16427755 | 113..142 | 100 | <- | Minus |
arm_2R | 16427811..16427900 | 23..112 | 100 | <- | Minus |
arm_2R | 16427105..16427181 | 287..363 | 97 | <- | Minus |
BO16858.complete Sequence
376 bp assembled on 2006-10-11
GenBank Submission: FJ633949
> BO16858.complete
GAAGTTATCAGTCGACATGAAGCTACTCTGCGTTGTTTTGGTTATTTACG
TTGTGGCTCTGACCCTCTTCGGAGTCGATGGACGTGGTGGGGGCACCACA
AATGGAGTGGAGGAACCAAAGTTCGTCGGTTTGTTCAGGCGGGCAAGGCG
CCATGTCCCCGCAATGAAAACCGCCCTTCTTCACGGCAACGAACCGCCTC
CACCTCCGAAATTCCGATCCCGTCGTGATACATTGGAGGACAAGCTCGTG
GCCAATGATGATCCTCCACCACCGCCGCAGTTCAGACAACGTCGTCAGGC
TCCACCTGGAATGCCACCACCGCCGGACGGCCTTCCACCACCACCCCAGT
TCCTTCTCGCAAGCTTTCTAGACCAT
BO16858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-RA | 345 | CG13428-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
CG13428-RB | 270 | CG13428-PB | 127..267 | 218..358 | 705 | 100 | Plus |
CG13428-RB | 270 | CG13428-PB | 1..126 | 17..142 | 630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-RA | 482 | CG13428-RA | 48..389 | 17..358 | 1710 | 100 | Plus |
CG13428-RB | 407 | CG13428-RB | 174..314 | 218..358 | 705 | 100 | Plus |
CG13428-RB | 407 | CG13428-RB | 48..173 | 17..142 | 630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20540305..20540401 | 113..17 | 485 | 100 | Minus |
2R | 25286936 | 2R | 20539965..20540040 | 217..142 | 380 | 100 | Minus |
2R | 25286936 | 2R | 20539605..20539676 | 358..287 | 360 | 100 | Minus |
2R | 25286936 | 2R | 20539745..20539813 | 286..218 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:47:09 has no hits.
BO16858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:51 Download gff for
BO16858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 1..345 | 17..362 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:59 Download gff for
BO16858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..394 | 4..363 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:16 Download gff for
BO16858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 48..389 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:51 Download gff for
BO16858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 34..394 | 4..363 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:46 Download gff for
BO16858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13428-RA | 48..389 | 17..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:46 Download gff for
BO16858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20539603..20539676 | 287..360 | 97 | <- | Minus |
2R | 20539745..20539813 | 218..286 | 100 | <- | Minus |
2R | 20539965..20540039 | 143..217 | 100 | <- | Minus |
2R | 20540221..20540250 | 113..142 | 100 | <- | Minus |
2R | 20540306..20540401 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:16 Download gff for
BO16858.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16427108..16427181 | 287..360 | 97 | <- | Minus |
arm_2R | 16427250..16427318 | 218..286 | 100 | <- | Minus |
arm_2R | 16427470..16427544 | 143..217 | 100 | <- | Minus |
arm_2R | 16427726..16427755 | 113..142 | 100 | <- | Minus |
arm_2R | 16427811..16427906 | 17..112 | 100 | | Minus |
BO16858.pep Sequence
Translation from 16 to 376
> BO16858.pep
MKLLCVVLVIYVVALTLFGVDGRGGGTTNGVEEPKFVGLFRRARRHVPAM
KTALLHGNEPPPPPKFRSRRDTLEDKLVANDDPPPPPQFRQRRQAPPGMP
PPPDGLPPPPQFLLASFLDH
BO16858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13428-PA | 114 | CG13428-PA | 1..114 | 1..114 | 620 | 100 | Plus |
CG13428-PB | 89 | CG13428-PB | 1..89 | 1..114 | 444 | 78.1 | Plus |