Clone BO16864 Report

Search the DGRC for BO16864

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG15449-RA
Protein status:BO16864.pep: validated full length
Sequenced Size:427

Clone Sequence Records

BO16864.3prime Sequence

425 bp (425 high quality bases) assembled on 2006-10-13

> BO16864.3prime
ATGGTCTAGAAAGCTTGCCTTGTCGCGAAATGTGAACACCGCATCGAATC
CGAATAGCACCCCATTGACGATGGACAGCGAGGCCTTGATGAGCGCGAGA
TCCCGAGTTCGGGTGCGGAAGGAGAACTCCCAGGCCTCAATGATGAACAC
ACCGCTGGCCACGAACAAGGTGCAGCCCAGGACGCTGAAGAATATATCGA
TGCGCTTGTGAATGGGTGCCCGCATCAGAACGCCTGCAAAGACCCCGATG
ACCACTATGATGTAGCCCGTGAAGGTGCCAGTGGCCAGGAACGAAGTCAT
TATATCGCGATCGTTGAAGCTGTAGAAGTGGAGCACCAGACACGCTACCG
CAAAACCCAGTTCGAGAAACTTGACCACATTGAGGCGGCCTTTTCGCTCG
CCATGAGACATGTCGACTGATAACT

BO16864.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG15449-PA 396 CG15449-RA 1..393 411..19 1965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:00:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15449-RA 765 CG15449-RA 168..560 411..19 1965 100 Minus
Ntf-2-RE 3078 CG1740-RE 1398..1618 19..239 1105 100 Plus
Ntf-2-RE 3078 CG1740-RE 1646..1771 233..358 630 100 Plus
Ntf-2-RE 3078 CG1740-RE 1995..2049 357..411 275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:00:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21039719..21039939 19..239 1105 100 Plus
X 23542271 X 21040035..21040160 233..358 630 100 Plus
X 23542271 X 21040384..21040438 357..411 275 100 Plus
Blast to na_te.dros performed on 2015-02-02 18:00:52 has no hits.

BO16864.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:11 Download gff for BO16864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15449-PA 1..396 16..411 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:58 Download gff for BO16864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 161..570 9..420 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:59 Download gff for BO16864.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 161..570 9..420 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:59 Download gff for BO16864.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21039709..21039933 9..233 98 <- Plus
X 21040036..21040159 234..357 100 <- Plus
X 21040385..21040445 358..420 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:58 Download gff for BO16864.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20910736..20910960 9..233 98 <- Plus
arm_X 20911063..20911186 234..357 100 <- Plus
arm_X 20911412..20911472 358..420 93   Plus

BO16864.5prime Sequence

425 bp (425 high quality bases) assembled on 2006-10-13

> BO16864.5prime
GAAGTTATCAGTCGACATGTCTCATGGCGAGCGATAAGGCCGCCTCAATG
TGGTCAAGTTTCTCGAACTGGGTTTTGCGGTAGCGTGTCTGGTGCTCCAC
TTCTACAGCTTCAACGATCGCGATATAATGACTTCGTTCCTGGCCACTGG
CACCTTCACGGGCTACATCATAGTGGTCATCGGGGTCTTTGCAGGCGTTC
TGATGCGGGCACCCATTCACAAGCGCATCGATATATTCTTCAGCGTCCTG
GGCTGCACCTTGTTCGTGGCCAGCGGTGTGTTCATCATTGAGGCCTGGGA
GTTCTCCTTCCGCACCCGAACTCGGGATCTCGCGCTCATCAAGGCCTCGC
TGTCCATCGTCAATGGGGTGCTATTCGGATTCGATGCGGTGTTCACATTT
CGCGACAAGGCAAGCTTTCTAGACC

BO16864.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG15449-PA 396 CG15449-RA 1..393 17..409 1940 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15449-RA 765 CG15449-RA 168..560 17..409 1950 99.7 Plus
Ntf-2-RE 3078 CG1740-RE 1398..1618 409..189 1105 100 Minus
Ntf-2-RE 3078 CG1740-RE 1646..1771 195..70 630 100 Minus
Ntf-2-RE 3078 CG1740-RE 1995..2049 71..17 260 98.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21039719..21039939 409..189 1105 100 Minus
X 23542271 X 21040035..21040160 195..70 630 100 Minus
X 23542271 X 21040384..21040438 71..17 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-12 17:45:51 has no hits.

BO16864.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:12 Download gff for BO16864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15449-PA 1..396 17..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:55 Download gff for BO16864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 161..570 8..419 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:00 Download gff for BO16864.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 161..570 8..419 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:00 Download gff for BO16864.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21039709..21039933 195..419 98 <- Minus
X 21040036..21040159 71..194 100 <- Minus
X 21040385..21040445 8..70 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:55 Download gff for BO16864.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20910736..20910960 195..419 98 <- Minus
arm_X 20911063..20911186 71..194 100 <- Minus
arm_X 20911412..20911472 8..70 92   Minus

BO16864.complete Sequence

427 bp assembled on 2006-10-11

GenBank Submission: FJ633950

> BO16864.complete
GAAGTTATCAGTCGACATGTCTCATGGCGAGCGAAAAGGCCGCCTCAATG
TGGTCAAGTTTCTCGAACTGGGTTTTGCGGTAGCGTGTCTGGTGCTCCAC
TTCTACAGCTTCAACGATCGCGATATAATGACTTCGTTCCTGGCCACTGG
CACCTTCACGGGCTACATCATAGTGGTCATCGGGGTCTTTGCAGGCGTTC
TGATGCGGGCACCCATTCACAAGCGCATCGATATATTCTTCAGCGTCCTG
GGCTGCACCTTGTTCGTGGCCAGCGGTGTGTTCATCATTGAGGCCTGGGA
GTTCTCCTTCCGCACCCGAACTCGGGATCTCGCGCTCATCAAGGCCTCGC
TGTCCATCGTCAATGGGGTGCTATTCGGATTCGATGCGGTGTTCACATTT
CGCGACAAGGCAAGCTTTCTAGACCAT

BO16864.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG15449-RA 396 CG15449-PA 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG15449-RA 765 CG15449-RA 168..560 17..409 1965 100 Plus
Ntf-2-RE 3078 CG1740-RE 1398..1618 409..189 1105 100 Minus
Ntf-2-RE 3078 CG1740-RE 1646..1771 195..70 630 100 Minus
Ntf-2-RE 3078 CG1740-RE 1995..2049 71..17 275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21039719..21039939 409..189 1105 100 Minus
X 23542271 X 21040035..21040160 195..70 630 100 Minus
X 23542271 X 21040384..21040438 71..17 275 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:56:54 has no hits.

BO16864.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:55 Download gff for BO16864.complete
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 1..396 17..412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:08 Download gff for BO16864.complete
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 1..396 17..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:45 Download gff for BO16864.complete
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 168..560 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:56 Download gff for BO16864.complete
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 1..396 17..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:22 Download gff for BO16864.complete
Subject Subject Range Query Range Percent Splice Strand
CG15449-RA 168..560 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:22 Download gff for BO16864.complete
Subject Subject Range Query Range Percent Splice Strand
X 21039716..21039933 195..411 99 <- Minus
X 21040036..21040159 71..194 100 <- Minus
X 21040385..21040438 17..70 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:45 Download gff for BO16864.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20910743..20910960 195..411 99 <- Minus
arm_X 20911063..20911186 71..194 100 <- Minus
arm_X 20911412..20911465 17..70 100   Minus

BO16864.pep Sequence

Translation from 16 to 427

> BO16864.pep
MSHGERKGRLNVVKFLELGFAVACLVLHFYSFNDRDIMTSFLATGTFTGY
IIVVIGVFAGVLMRAPIHKRIDIFFSVLGCTLFVASGVFIIEAWEFSFRT
RTRDLALIKASLSIVNGVLFGFDAVFTFRDKASFLDH

BO16864.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG15449-PA 131 CG15449-PA 1..131 1..131 665 100 Plus
CG44325-PD 146 CG44325-PD 8..126 12..131 159 31.4 Plus
CG44325-PE 125 CG44325-PE 8..120 12..125 158 32.2 Plus
CG44325-PB 125 CG44325-PB 8..120 12..125 158 32.2 Plus