Clone Sequence Records
BO16864.3prime Sequence
425 bp (425 high quality bases) assembled on 2006-10-13
> BO16864.3prime
ATGGTCTAGAAAGCTTGCCTTGTCGCGAAATGTGAACACCGCATCGAATC
CGAATAGCACCCCATTGACGATGGACAGCGAGGCCTTGATGAGCGCGAGA
TCCCGAGTTCGGGTGCGGAAGGAGAACTCCCAGGCCTCAATGATGAACAC
ACCGCTGGCCACGAACAAGGTGCAGCCCAGGACGCTGAAGAATATATCGA
TGCGCTTGTGAATGGGTGCCCGCATCAGAACGCCTGCAAAGACCCCGATG
ACCACTATGATGTAGCCCGTGAAGGTGCCAGTGGCCAGGAACGAAGTCAT
TATATCGCGATCGTTGAAGCTGTAGAAGTGGAGCACCAGACACGCTACCG
CAAAACCCAGTTCGAGAAACTTGACCACATTGAGGCGGCCTTTTCGCTCG
CCATGAGACATGTCGACTGATAACT
BO16864.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15449-PA | 396 | CG15449-RA | 1..393 | 411..19 | 1965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:00:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15449-RA | 765 | CG15449-RA | 168..560 | 411..19 | 1965 | 100 | Minus |
Ntf-2-RE | 3078 | CG1740-RE | 1398..1618 | 19..239 | 1105 | 100 | Plus |
Ntf-2-RE | 3078 | CG1740-RE | 1646..1771 | 233..358 | 630 | 100 | Plus |
Ntf-2-RE | 3078 | CG1740-RE | 1995..2049 | 357..411 | 275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:00:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21039719..21039939 | 19..239 | 1105 | 100 | Plus |
X | 23542271 | X | 21040035..21040160 | 233..358 | 630 | 100 | Plus |
X | 23542271 | X | 21040384..21040438 | 357..411 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:00:52 has no hits.
BO16864.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:11 Download gff for
BO16864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-PA | 1..396 | 16..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:40:58 Download gff for
BO16864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 161..570 | 9..420 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:12:59 Download gff for
BO16864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 161..570 | 9..420 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:12:59 Download gff for
BO16864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21039709..21039933 | 9..233 | 98 | <- | Plus |
X | 21040036..21040159 | 234..357 | 100 | <- | Plus |
X | 21040385..21040445 | 358..420 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:40:58 Download gff for
BO16864.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20910736..20910960 | 9..233 | 98 | <- | Plus |
arm_X | 20911063..20911186 | 234..357 | 100 | <- | Plus |
arm_X | 20911412..20911472 | 358..420 | 93 | | Plus |
BO16864.5prime Sequence
425 bp (425 high quality bases) assembled on 2006-10-13
> BO16864.5prime
GAAGTTATCAGTCGACATGTCTCATGGCGAGCGATAAGGCCGCCTCAATG
TGGTCAAGTTTCTCGAACTGGGTTTTGCGGTAGCGTGTCTGGTGCTCCAC
TTCTACAGCTTCAACGATCGCGATATAATGACTTCGTTCCTGGCCACTGG
CACCTTCACGGGCTACATCATAGTGGTCATCGGGGTCTTTGCAGGCGTTC
TGATGCGGGCACCCATTCACAAGCGCATCGATATATTCTTCAGCGTCCTG
GGCTGCACCTTGTTCGTGGCCAGCGGTGTGTTCATCATTGAGGCCTGGGA
GTTCTCCTTCCGCACCCGAACTCGGGATCTCGCGCTCATCAAGGCCTCGC
TGTCCATCGTCAATGGGGTGCTATTCGGATTCGATGCGGTGTTCACATTT
CGCGACAAGGCAAGCTTTCTAGACC
BO16864.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15449-PA | 396 | CG15449-RA | 1..393 | 17..409 | 1940 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:45:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15449-RA | 765 | CG15449-RA | 168..560 | 17..409 | 1950 | 99.7 | Plus |
Ntf-2-RE | 3078 | CG1740-RE | 1398..1618 | 409..189 | 1105 | 100 | Minus |
Ntf-2-RE | 3078 | CG1740-RE | 1646..1771 | 195..70 | 630 | 100 | Minus |
Ntf-2-RE | 3078 | CG1740-RE | 1995..2049 | 71..17 | 260 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21039719..21039939 | 409..189 | 1105 | 100 | Minus |
X | 23542271 | X | 21040035..21040160 | 195..70 | 630 | 100 | Minus |
X | 23542271 | X | 21040384..21040438 | 71..17 | 260 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:45:51 has no hits.
BO16864.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:12 Download gff for
BO16864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-PA | 1..396 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:41:55 Download gff for
BO16864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 161..570 | 8..419 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:00 Download gff for
BO16864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 161..570 | 8..419 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:00 Download gff for
BO16864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21039709..21039933 | 195..419 | 98 | <- | Minus |
X | 21040036..21040159 | 71..194 | 100 | <- | Minus |
X | 21040385..21040445 | 8..70 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:41:55 Download gff for
BO16864.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20910736..20910960 | 195..419 | 98 | <- | Minus |
arm_X | 20911063..20911186 | 71..194 | 100 | <- | Minus |
arm_X | 20911412..20911472 | 8..70 | 92 | | Minus |
BO16864.complete Sequence
427 bp assembled on 2006-10-11
GenBank Submission: FJ633950
> BO16864.complete
GAAGTTATCAGTCGACATGTCTCATGGCGAGCGAAAAGGCCGCCTCAATG
TGGTCAAGTTTCTCGAACTGGGTTTTGCGGTAGCGTGTCTGGTGCTCCAC
TTCTACAGCTTCAACGATCGCGATATAATGACTTCGTTCCTGGCCACTGG
CACCTTCACGGGCTACATCATAGTGGTCATCGGGGTCTTTGCAGGCGTTC
TGATGCGGGCACCCATTCACAAGCGCATCGATATATTCTTCAGCGTCCTG
GGCTGCACCTTGTTCGTGGCCAGCGGTGTGTTCATCATTGAGGCCTGGGA
GTTCTCCTTCCGCACCCGAACTCGGGATCTCGCGCTCATCAAGGCCTCGC
TGTCCATCGTCAATGGGGTGCTATTCGGATTCGATGCGGTGTTCACATTT
CGCGACAAGGCAAGCTTTCTAGACCAT
BO16864.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15449-RA | 396 | CG15449-PA | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:56:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15449-RA | 765 | CG15449-RA | 168..560 | 17..409 | 1965 | 100 | Plus |
Ntf-2-RE | 3078 | CG1740-RE | 1398..1618 | 409..189 | 1105 | 100 | Minus |
Ntf-2-RE | 3078 | CG1740-RE | 1646..1771 | 195..70 | 630 | 100 | Minus |
Ntf-2-RE | 3078 | CG1740-RE | 1995..2049 | 71..17 | 275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21039719..21039939 | 409..189 | 1105 | 100 | Minus |
X | 23542271 | X | 21040035..21040160 | 195..70 | 630 | 100 | Minus |
X | 23542271 | X | 21040384..21040438 | 71..17 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:56:54 has no hits.
BO16864.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:55 Download gff for
BO16864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 1..396 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:08 Download gff for
BO16864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 1..396 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:45 Download gff for
BO16864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 168..560 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:56 Download gff for
BO16864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 1..396 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:22 Download gff for
BO16864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15449-RA | 168..560 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:22 Download gff for
BO16864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21039716..21039933 | 195..411 | 99 | <- | Minus |
X | 21040036..21040159 | 71..194 | 100 | <- | Minus |
X | 21040385..21040438 | 17..70 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:45 Download gff for
BO16864.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20910743..20910960 | 195..411 | 99 | <- | Minus |
arm_X | 20911063..20911186 | 71..194 | 100 | <- | Minus |
arm_X | 20911412..20911465 | 17..70 | 100 | | Minus |
BO16864.pep Sequence
Translation from 16 to 427
> BO16864.pep
MSHGERKGRLNVVKFLELGFAVACLVLHFYSFNDRDIMTSFLATGTFTGY
IIVVIGVFAGVLMRAPIHKRIDIFFSVLGCTLFVASGVFIIEAWEFSFRT
RTRDLALIKASLSIVNGVLFGFDAVFTFRDKASFLDH
BO16864.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15449-PA | 131 | CG15449-PA | 1..131 | 1..131 | 665 | 100 | Plus |
CG44325-PD | 146 | CG44325-PD | 8..126 | 12..131 | 159 | 31.4 | Plus |
CG44325-PE | 125 | CG44325-PE | 8..120 | 12..125 | 158 | 32.2 | Plus |
CG44325-PB | 125 | CG44325-PB | 8..120 | 12..125 | 158 | 32.2 | Plus |