Clone Sequence Records
BO16865.3prime Sequence
428 bp (428 high quality bases) assembled on 2006-10-13
> BO16865.3prime
ATGGTCTAGAAAGCTTGCAATGATATAATCTTCTTCGTCCAAGCAACCTA
ATCCCGATATCTGCTCGGCAAATGGTTTGATTGTGGCAGCCAACTTGTTC
AGTAGACCGTGCAGACATTTGGGTTCGTCAAAGACAAGTTTCTTGAAGAA
TTCATAGGATACCTTTAGGTACCAGGTAATCTTTCTGTCTTTGCCGTTTG
CCGGTTCCAAAGTTACGTATCCGGAGCATTGTTTCAACTCATATACGGTC
GGGACGATTTTATCGGCCAGGCTGGTCAGTGTTTCGATGGCCACCTGAGT
ACACTTGCCCAGCCTTCCCCAGCTTTCACTTATAGTGGCCTGGGCCTCCG
TCTCCCGGGGAATGAGGCAGACAGCCAAAATACTGAGCAGAAATATGGAC
TTGATCACGCTCATGTCGACTGATAACT
BO16865.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15616-PA | 399 | Acp53C14b-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:01:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp53C14b-RB | 590 | CG15616-RB | 40..435 | 414..19 | 1980 | 100 | Minus |
| Acp53C14b-RA | 499 | CG15616-RA | 40..435 | 414..19 | 1980 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16748970..16749323 | 19..372 | 1770 | 100 | Plus |
| 2R | 25286936 | 2R | 16749378..16749421 | 371..414 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 18:01:15 has no hits.
BO16865.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:13 Download gff for
BO16865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15616-PA | 1..399 | 15..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:03 Download gff for
BO16865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 20..425 | 15..422 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:03 Download gff for
BO16865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 33..438 | 15..422 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:03 Download gff for
BO16865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16748966..16749323 | 15..372 | 99 | <- | Plus |
| 2R | 16749380..16749428 | 373..422 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:03 Download gff for
BO16865.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12636471..12636828 | 15..372 | 99 | <- | Plus |
| arm_2R | 12636885..12636933 | 373..422 | 94 | | Plus |
BO16865.5prime Sequence
428 bp (428 high quality bases) assembled on 2006-10-13
> BO16865.5prime
GAAGTTATCAGTCGACATGAGCGTGATCAAGTCCATATTTCTGCTCAGTA
TTTTGGCTGTCTGCCTCATTCCCCGGGAGACGGAGGCCCAGGCCACTATA
AGTGAAAGCTGGGGAAGGCTGGGCAAGTGTACTCAGGTGGCCATCGAAAC
ACTGACCAGCCTGGCCGATAAAATCGTCCCGACCGTATATGAGTTGAAAC
AATGCTCCGGATACGTAACTTTGGAACCGGCAAACGGCAAAGACAGAAAG
ATTACCTGGTACCTAAAGGTATCCTATGAATTCTTCAAGAAACTTGTCTT
TGACGAACCCAAATGTCTGCACGGTCTACTGAACAAGTTGGCTGCCACAA
TCAAACCATTTGCCGAGCAGATATCGGGATTAGGTTGCTTGGACGAAGAA
GATTATATCATTGCAAGCTTTCTAGACC
BO16865.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15616-PA | 399 | Acp53C14b-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp53C14b-RB | 590 | CG15616-RB | 40..435 | 17..412 | 1980 | 100 | Plus |
| Acp53C14b-RA | 499 | CG15616-RA | 40..435 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16748970..16749323 | 412..59 | 1770 | 100 | Minus |
| 2R | 25286936 | 2R | 16749378..16749421 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:25:29 has no hits.
BO16865.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:14 Download gff for
BO16865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15616-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:59 Download gff for
BO16865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 20..425 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:39 Download gff for
BO16865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 33..438 | 9..416 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:39 Download gff for
BO16865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16748966..16749323 | 59..416 | 99 | <- | Minus |
| 2R | 16749380..16749428 | 9..58 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:59 Download gff for
BO16865.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12636471..12636828 | 59..416 | 99 | <- | Minus |
| arm_2R | 12636885..12636933 | 9..58 | 94 | | Minus |
BO16865.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ633951
> BO16865.complete
GAAGTTATCAGTCGACATGAGCGTGATCAAGTCCATATTTCTGCTCAGTA
TTTTGGCTGTCTGCCTCATTCCCCGGGAGACGGAGGCCCAGGCCACTATA
AGTGAAAGCTGGGGAAGGCTGGGCAAGTGTACTCAGGTGGCCATCGAAAC
ACTGACCAGCCTGGCCGATAAAATCGTCCCGACCGTATATGAGTTGAAAC
AATGCTCCGGATACGTAACTTTGGAACCGGCAAACGGCAAAGACAGAAAG
ATTACCTGGTACCTAAAGGTATCCTATGAATTCTTCAAGAAACTTGTCTT
TGACGAACCCAAATGTCTGCACGGTCTACTGAACAAGTTGGCTGCCACAA
TCAAACCATTTGCCGAGCAGATATCGGGATTAGGTTGCTTGGACGAAGAA
GATTATATCATTGCAAGCTTTCTAGACCAT
BO16865.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp53C14b-RB | 399 | CG15616-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
| Acp53C14b-RA | 399 | CG15616-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp53C14b-RB | 590 | CG15616-RB | 40..435 | 17..412 | 1980 | 100 | Plus |
| Acp53C14b-RA | 499 | CG15616-RA | 40..435 | 17..412 | 1980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:16:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16748970..16749323 | 412..59 | 1770 | 100 | Minus |
| 2R | 25286936 | 2R | 16749378..16749421 | 60..17 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:16:29 has no hits.
BO16865.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:17 Download gff for
BO16865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:40 Download gff for
BO16865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 20..425 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:52:38 Download gff for
BO16865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 27..422 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:17 Download gff for
BO16865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 20..425 | 9..416 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:56:11 Download gff for
BO16865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acp53C14b-RA | 40..435 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:56:11 Download gff for
BO16865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16748968..16749323 | 59..414 | 99 | <- | Minus |
| 2R | 16749380..16749421 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:52:38 Download gff for
BO16865.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12636473..12636828 | 59..414 | 99 | <- | Minus |
| arm_2R | 12636885..12636926 | 17..58 | 100 | | Minus |
BO16865.pep Sequence
Translation from 16 to 430
> BO16865.pep
MSVIKSIFLLSILAVCLIPRETEAQATISESWGRLGKCTQVAIETLTSLA
DKIVPTVYELKQCSGYVTLEPANGKDRKITWYLKVSYEFFKKLVFDEPKC
LHGLLNKLAATIKPFAEQISGLGCLDEEDYIIASFLDH
BO16865.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acp53C14b-PB | 132 | CG15616-PB | 1..132 | 1..132 | 679 | 100 | Plus |
| Acp53C14b-PA | 132 | CG15616-PA | 1..132 | 1..132 | 679 | 100 | Plus |
| Acp53C14a-PB | 121 | CG8626-PB | 1..121 | 1..127 | 136 | 26.8 | Plus |
| Acp53C14a-PA | 121 | CG8626-PA | 1..121 | 1..127 | 136 | 26.8 | Plus |
