Clone Sequence Records
BO16866.3prime Sequence
386 bp (386 high quality bases) assembled on 2006-10-13
> BO16866.3prime
ATGGTCTAGAAAGCTTGCCGCCGGCTTTCTGCATCGTTTTCCGAACAGCT
CAAAGCCAGGCTTACATTTTTGGGTCGTCTCCAGCAATATTCGGTTGTCT
ATAACTGGCAGCACAGTGGTGTTTTCATTAACCAGCTCCTCCGATCCGCT
GGTGATCTGTTCTGTGCTGTTTGTACTTTCCAAACGGAGTGCTATTGTGG
ATGCGGGTTCCTCAGTTGTCGTTGTGGTCGAGTATGTGAATCTCGAGCTG
GTATCGTCGTCATCCTTTGGAAAAACGATGCGATCGTTACCACTGGGCCG
TGTTCTCGCCTCGGTGAGGAGGAAGACCAGCGGTAGGATGCACAGCACCA
ATGGATTAATACGTATCAACATGTCGACTGATAACT
BO16866.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15917-PA | 357 | CG15917-RA | 1..354 | 372..19 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbp-RA | 453 | CG15917-RA | 48..401 | 372..19 | 1770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17136498..17136851 | 372..19 | 1770 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:50:37 has no hits.
BO16866.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:15 Download gff for
BO16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15917-PA | 1..357 | 15..372 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:57 Download gff for
BO16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbp-RA | 42..401 | 12..372 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:39 Download gff for
BO16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbp-RA | 48..407 | 12..372 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:39 Download gff for
BO16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17136498..17136857 | 12..372 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:57 Download gff for
BO16866.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13024003..13024362 | 12..372 | 99 | | Minus |
BO16866.5prime Sequence
386 bp (386 high quality bases) assembled on 2006-10-13
> BO16866.5prime
GAAGTTATCAGTCGACATGTTGATACGTATTAATCCATTGGTGCTGTGCA
TCCTACCGCTGGTCTTCCTCCTCACCGAGGCGAGAACACGGCCCAGTGGT
AACGATCGCATCGTTTTTCCAAAGGATGACGACGATACCAGCTCGAGATT
CACATACTCGACCACAACGACAACTGAGGAACCCGCATCCACAATAGCAC
TCCGTTTGGAAAGTACAAACAGCACAGAACAGATCACCAGCGGATCGGAG
GAGCTGGTTAATGAAAACACCACTGTGCTGCCAGTTATAGACAACCGAAT
ATTGCTGGAGACGACCCAAAAATGTAAGCCTGGCTTTGAGCTGTTCGGAA
AACGATGCAGAAAGCCGGCGGCAAGCTTTCTAGACC
BO16866.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15917-PA | 357 | CG15917-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:56:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbp-RA | 453 | CG15917-RA | 48..401 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:56:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17136498..17136851 | 17..370 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:56:09 has no hits.
BO16866.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:15 Download gff for
BO16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15917-PA | 1..357 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:14 Download gff for
BO16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbp-RA | 42..401 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:14 Download gff for
BO16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbp-RA | 48..407 | 17..377 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:14 Download gff for
BO16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17136498..17136857 | 17..377 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:14 Download gff for
BO16866.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13024003..13024362 | 17..377 | 99 | | Plus |
BO16866.complete Sequence
388 bp assembled on 2006-10-11
GenBank Submission: FJ633952
> BO16866.complete
GAAGTTATCAGTCGACATGTTGATACGTATTAATCCATTGGTGCTGTGCA
TCCTACCGCTGGTCTTCCTCCTCACCGAGGCGAGAACACGGCCCAGTGGT
AACGATCGCATCGTTTTTCCAAAGGATGACGACGATACCAGCTCGAGATT
CACATACTCGACCACAACGACAACTGAGGAACCCGCATCCACAATAGCAC
TCCGTTTGGAAAGTACAAACAGCACAGAACAGATCACCAGCGGATCGGAG
GAGCTGGTTAATGAAAACACCACTGTGCTGCCAGTTATAGACAACCGAAT
ATTGCTGGAGACGACCCAAAAATGTAAGCCTGGCTTTGAGCTGTTCGGAA
AACGATGCAGAAAGCCGGCGGCAAGCTTTCTAGACCAT
BO16866.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbp-RA | 357 | CG15917-PA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbp-RA | 453 | CG15917-RA | 48..401 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17136498..17136851 | 17..370 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:48:25 has no hits.
BO16866.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:52 Download gff for
BO16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15917-RA | 1..357 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:00 Download gff for
BO16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15917-RA | 42..401 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:11 Download gff for
BO16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbp-RA | 47..395 | 22..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:52 Download gff for
BO16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15917-RA | 42..401 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:01 Download gff for
BO16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gbp-RA | 53..401 | 22..372 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:01 Download gff for
BO16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17136503..17136851 | 22..372 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:11 Download gff for
BO16866.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13024008..13024356 | 22..372 | 99 | | Plus |
BO16866.pep Sequence
Translation from 16 to 388
> BO16866.pep
MLIRINPLVLCILPLVFLLTEARTRPSGNDRIVFPKDDDDTSSRFTYSTT
TTTEEPASTIALRLESTNSTEQITSGSEELVNENTTVLPVIDNRILLETT
QKCKPGFELFGKRCRKPAASFLDH
BO16866.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gbp-PA | 118 | CG15917-PA | 1..118 | 1..118 | 600 | 100 | Plus |