Clone BO16866 Report

Search the DGRC for BO16866

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG15917-RA
Protein status:BO16866.pep: validated full length
Sequenced Size:388

Clone Sequence Records

BO16866.3prime Sequence

386 bp (386 high quality bases) assembled on 2006-10-13

> BO16866.3prime
ATGGTCTAGAAAGCTTGCCGCCGGCTTTCTGCATCGTTTTCCGAACAGCT
CAAAGCCAGGCTTACATTTTTGGGTCGTCTCCAGCAATATTCGGTTGTCT
ATAACTGGCAGCACAGTGGTGTTTTCATTAACCAGCTCCTCCGATCCGCT
GGTGATCTGTTCTGTGCTGTTTGTACTTTCCAAACGGAGTGCTATTGTGG
ATGCGGGTTCCTCAGTTGTCGTTGTGGTCGAGTATGTGAATCTCGAGCTG
GTATCGTCGTCATCCTTTGGAAAAACGATGCGATCGTTACCACTGGGCCG
TGTTCTCGCCTCGGTGAGGAGGAAGACCAGCGGTAGGATGCACAGCACCA
ATGGATTAATACGTATCAACATGTCGACTGATAACT

BO16866.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15917-PA 357 CG15917-RA 1..354 372..19 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:41
Subject Length Description Subject Range Query Range Score Percent Strand
Gbp-RA 453 CG15917-RA 48..401 372..19 1770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17136498..17136851 372..19 1770 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:50:37 has no hits.

BO16866.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:15 Download gff for BO16866.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15917-PA 1..357 15..372 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:57 Download gff for BO16866.3prime
Subject Subject Range Query Range Percent Splice Strand
Gbp-RA 42..401 12..372 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:39 Download gff for BO16866.3prime
Subject Subject Range Query Range Percent Splice Strand
Gbp-RA 48..407 12..372 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:39 Download gff for BO16866.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17136498..17136857 12..372 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:57 Download gff for BO16866.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13024003..13024362 12..372 99   Minus

BO16866.5prime Sequence

386 bp (386 high quality bases) assembled on 2006-10-13

> BO16866.5prime
GAAGTTATCAGTCGACATGTTGATACGTATTAATCCATTGGTGCTGTGCA
TCCTACCGCTGGTCTTCCTCCTCACCGAGGCGAGAACACGGCCCAGTGGT
AACGATCGCATCGTTTTTCCAAAGGATGACGACGATACCAGCTCGAGATT
CACATACTCGACCACAACGACAACTGAGGAACCCGCATCCACAATAGCAC
TCCGTTTGGAAAGTACAAACAGCACAGAACAGATCACCAGCGGATCGGAG
GAGCTGGTTAATGAAAACACCACTGTGCTGCCAGTTATAGACAACCGAAT
ATTGCTGGAGACGACCCAAAAATGTAAGCCTGGCTTTGAGCTGTTCGGAA
AACGATGCAGAAAGCCGGCGGCAAGCTTTCTAGACC

BO16866.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15917-PA 357 CG15917-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:56:13
Subject Length Description Subject Range Query Range Score Percent Strand
Gbp-RA 453 CG15917-RA 48..401 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:56:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17136498..17136851 17..370 1770 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:56:09 has no hits.

BO16866.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:15 Download gff for BO16866.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15917-PA 1..357 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:14 Download gff for BO16866.5prime
Subject Subject Range Query Range Percent Splice Strand
Gbp-RA 42..401 17..377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:14 Download gff for BO16866.5prime
Subject Subject Range Query Range Percent Splice Strand
Gbp-RA 48..407 17..377 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:14 Download gff for BO16866.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17136498..17136857 17..377 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:14 Download gff for BO16866.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13024003..13024362 17..377 99   Plus

BO16866.complete Sequence

388 bp assembled on 2006-10-11

GenBank Submission: FJ633952

> BO16866.complete
GAAGTTATCAGTCGACATGTTGATACGTATTAATCCATTGGTGCTGTGCA
TCCTACCGCTGGTCTTCCTCCTCACCGAGGCGAGAACACGGCCCAGTGGT
AACGATCGCATCGTTTTTCCAAAGGATGACGACGATACCAGCTCGAGATT
CACATACTCGACCACAACGACAACTGAGGAACCCGCATCCACAATAGCAC
TCCGTTTGGAAAGTACAAACAGCACAGAACAGATCACCAGCGGATCGGAG
GAGCTGGTTAATGAAAACACCACTGTGCTGCCAGTTATAGACAACCGAAT
ATTGCTGGAGACGACCCAAAAATGTAAGCCTGGCTTTGAGCTGTTCGGAA
AACGATGCAGAAAGCCGGCGGCAAGCTTTCTAGACCAT

BO16866.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:48:26
Subject Length Description Subject Range Query Range Score Percent Strand
Gbp-RA 357 CG15917-PA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
Gbp-RA 453 CG15917-RA 48..401 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17136498..17136851 17..370 1770 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:48:25 has no hits.

BO16866.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:52 Download gff for BO16866.complete
Subject Subject Range Query Range Percent Splice Strand
CG15917-RA 1..357 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:00 Download gff for BO16866.complete
Subject Subject Range Query Range Percent Splice Strand
CG15917-RA 42..401 17..377 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:11 Download gff for BO16866.complete
Subject Subject Range Query Range Percent Splice Strand
Gbp-RA 47..395 22..372 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:52 Download gff for BO16866.complete
Subject Subject Range Query Range Percent Splice Strand
CG15917-RA 42..401 17..377 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:05:01 Download gff for BO16866.complete
Subject Subject Range Query Range Percent Splice Strand
Gbp-RA 53..401 22..372 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:05:01 Download gff for BO16866.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17136503..17136851 22..372 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:11 Download gff for BO16866.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13024008..13024356 22..372 99   Plus

BO16866.pep Sequence

Translation from 16 to 388

> BO16866.pep
MLIRINPLVLCILPLVFLLTEARTRPSGNDRIVFPKDDDDTSSRFTYSTT
TTTEEPASTIALRLESTNSTEQITSGSEELVNENTTVLPVIDNRILLETT
QKCKPGFELFGKRCRKPAASFLDH

BO16866.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
Gbp-PA 118 CG15917-PA 1..118 1..118 600 100 Plus