Clone BO16867 Report

Search the DGRC for BO16867

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG17048-RA
Protein status:BO16867.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO16867.3prime Sequence

404 bp (404 high quality bases) assembled on 2006-10-13

> BO16867.3prime
ATGGTCTAGAAAGCTTGCCCAGTAAAGCAACAGCAAATAAAAGGGGCCCA
GACTGAGCACCATCAGCGGTACCATCATAATACCAAATAGACGCCAGTTA
TCGTGGAACTGCCTGGACACCTGGCCATCCATGTCCAGGCTGCTCCGACA
GATTGGGCAACGCTTGGCCACCCAGTTGCGAGCTTCCCTGTACAGTGCTA
AACAGCTTTTGCAGAACGCATGATTGCAGTGCAGCTTCTCTGGATTCTGT
ATGCGATCCAGGCAAAAGGCACACATATCCGGCTGATCCCCATCCTTAAT
CGTATCGAACAACGATGGATGATCGCCGTTCTCACTGGAGTAGTCGCTCC
GCAGACCAAAGTTCGTCGCATCGAGGCCCTGCTGTACCATGTCGACTGAT
AACT

BO16867.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-PA 375 CG17048-RA 1..372 390..19 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 712 CG17048-RB 167..538 390..19 1860 100 Minus
CG17048-RA 592 CG17048-RA 167..538 390..19 1860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13354043..13354333 100..390 1455 100 Plus
2R 25286936 2R 13353812..13353892 19..99 405 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:50:48 has no hits.

BO16867.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:16 Download gff for BO16867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-PA 1..375 16..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:59 Download gff for BO16867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 185..566 11..398 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:40 Download gff for BO16867.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 163..544 11..398 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:40 Download gff for BO16867.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13353806..13353892 11..99 95 <- Plus
2R 13354043..13354337 100..398 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:59 Download gff for BO16867.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9241311..9241397 11..99 95 <- Plus
arm_2R 9241548..9241842 100..398 98   Plus

BO16867.5prime Sequence

404 bp (404 high quality bases) assembled on 2006-10-13

> BO16867.5prime
GAAGTTATCAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTG
GTCTGCGGAGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTC
GATACGATTAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGA
TCGCATACAGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAA
GCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGC
CCAATCTGTCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTT
CCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGC
TCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTACTGGGCAAGCTTTCTA
GACC

BO16867.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-PA 375 CG17048-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 712 CG17048-RB 167..538 17..388 1860 100 Plus
CG17048-RA 592 CG17048-RA 167..538 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13354043..13354333 307..17 1455 100 Minus
2R 25286936 2R 13353812..13353892 388..308 405 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:47:21 has no hits.

BO16867.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:17 Download gff for BO16867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-PA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:50 Download gff for BO16867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 185..566 9..396 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:50 Download gff for BO16867.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 163..544 9..396 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:50 Download gff for BO16867.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13353806..13353892 308..396 95 <- Minus
2R 13354043..13354337 9..307 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:50 Download gff for BO16867.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9241548..9241842 9..307 98   Minus
arm_2R 9241311..9241397 308..396 95 <- Minus

BO16867.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ633953

> BO16867.complete
GAAGTTATCAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTG
GTCTGCGGAGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTC
GATACGATTAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGA
TCGCATACAGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAA
GCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGC
CCAATCTGTCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTT
CCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGC
TCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTACTGGGCAAGCTTTCTA
GACCAT

BO16867.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 375 CG17048-PB 1..372 17..388 1860 100 Plus
CG17048-RA 375 CG17048-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-RB 712 CG17048-RB 167..538 17..388 1860 100 Plus
CG17048-RA 592 CG17048-RA 167..538 17..388 1860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13354043..13354333 307..17 1455 100 Minus
2R 25286936 2R 13353812..13353892 388..308 405 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:45:32 has no hits.

BO16867.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:58 Download gff for BO16867.complete
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:12 Download gff for BO16867.complete
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:10 Download gff for BO16867.complete
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 189..560 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:58 Download gff for BO16867.complete
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 1..375 17..391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:35 Download gff for BO16867.complete
Subject Subject Range Query Range Percent Splice Strand
CG17048-RA 167..538 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:35 Download gff for BO16867.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13353809..13353892 308..390 97 <- Minus
2R 13354043..13354333 17..307 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:10 Download gff for BO16867.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9241314..9241397 308..390 97 <- Minus
arm_2R 9241548..9241838 17..307 100   Minus

BO16867.pep Sequence

Translation from 16 to 406

> BO16867.pep
MVQQGLDATNFGLRSDYSSENGDHPSLFDTIKDGDQPDMCAFCLDRIQNP
EKLHCNHAFCKSCLALYREARNWVAKRCPICRSSLDMDGQVSRQFHDNWR
LFGIMMVPLMVLSLGPFYLLLLYWASFLDH

BO16867.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17048-PB 124 CG17048-PB 1..124 1..124 689 100 Plus
CG17048-PA 124 CG17048-PA 1..124 1..124 689 100 Plus