Clone Sequence Records
BO16867.3prime Sequence
404 bp (404 high quality bases) assembled on 2006-10-13
> BO16867.3prime
ATGGTCTAGAAAGCTTGCCCAGTAAAGCAACAGCAAATAAAAGGGGCCCA
GACTGAGCACCATCAGCGGTACCATCATAATACCAAATAGACGCCAGTTA
TCGTGGAACTGCCTGGACACCTGGCCATCCATGTCCAGGCTGCTCCGACA
GATTGGGCAACGCTTGGCCACCCAGTTGCGAGCTTCCCTGTACAGTGCTA
AACAGCTTTTGCAGAACGCATGATTGCAGTGCAGCTTCTCTGGATTCTGT
ATGCGATCCAGGCAAAAGGCACACATATCCGGCTGATCCCCATCCTTAAT
CGTATCGAACAACGATGGATGATCGCCGTTCTCACTGGAGTAGTCGCTCC
GCAGACCAAAGTTCGTCGCATCGAGGCCCTGCTGTACCATGTCGACTGAT
AACT
BO16867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-PA | 375 | CG17048-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-RB | 712 | CG17048-RB | 167..538 | 390..19 | 1860 | 100 | Minus |
CG17048-RA | 592 | CG17048-RA | 167..538 | 390..19 | 1860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13354043..13354333 | 100..390 | 1455 | 100 | Plus |
2R | 25286936 | 2R | 13353812..13353892 | 19..99 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:50:48 has no hits.
BO16867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:16 Download gff for
BO16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-PA | 1..375 | 16..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:50:59 Download gff for
BO16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 185..566 | 11..398 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:40 Download gff for
BO16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 163..544 | 11..398 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:40 Download gff for
BO16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13353806..13353892 | 11..99 | 95 | <- | Plus |
2R | 13354043..13354337 | 100..398 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:50:59 Download gff for
BO16867.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9241311..9241397 | 11..99 | 95 | <- | Plus |
arm_2R | 9241548..9241842 | 100..398 | 98 | | Plus |
BO16867.5prime Sequence
404 bp (404 high quality bases) assembled on 2006-10-13
> BO16867.5prime
GAAGTTATCAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTG
GTCTGCGGAGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTC
GATACGATTAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGA
TCGCATACAGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAA
GCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGC
CCAATCTGTCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTT
CCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGC
TCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTACTGGGCAAGCTTTCTA
GACC
BO16867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-PA | 375 | CG17048-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-RB | 712 | CG17048-RB | 167..538 | 17..388 | 1860 | 100 | Plus |
CG17048-RA | 592 | CG17048-RA | 167..538 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13354043..13354333 | 307..17 | 1455 | 100 | Minus |
2R | 25286936 | 2R | 13353812..13353892 | 388..308 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:47:21 has no hits.
BO16867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:17 Download gff for
BO16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-PA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:19:50 Download gff for
BO16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 185..566 | 9..396 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:04:50 Download gff for
BO16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 163..544 | 9..396 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:04:50 Download gff for
BO16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13353806..13353892 | 308..396 | 95 | <- | Minus |
2R | 13354043..13354337 | 9..307 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:19:50 Download gff for
BO16867.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9241548..9241842 | 9..307 | 98 | | Minus |
arm_2R | 9241311..9241397 | 308..396 | 95 | <- | Minus |
BO16867.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ633953
> BO16867.complete
GAAGTTATCAGTCGACATGGTACAGCAGGGCCTCGATGCGACGAACTTTG
GTCTGCGGAGCGACTACTCCAGTGAGAACGGCGATCATCCATCGTTGTTC
GATACGATTAAGGATGGGGATCAGCCGGATATGTGTGCCTTTTGCCTGGA
TCGCATACAGAATCCAGAGAAGCTGCACTGCAATCATGCGTTCTGCAAAA
GCTGTTTAGCACTGTACAGGGAAGCTCGCAACTGGGTGGCCAAGCGTTGC
CCAATCTGTCGGAGCAGCCTGGACATGGATGGCCAGGTGTCCAGGCAGTT
CCACGATAACTGGCGTCTATTTGGTATTATGATGGTACCGCTGATGGTGC
TCAGTCTGGGCCCCTTTTATTTGCTGTTGCTTTACTGGGCAAGCTTTCTA
GACCAT
BO16867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-RB | 375 | CG17048-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
CG17048-RA | 375 | CG17048-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:45:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-RB | 712 | CG17048-RB | 167..538 | 17..388 | 1860 | 100 | Plus |
CG17048-RA | 592 | CG17048-RA | 167..538 | 17..388 | 1860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13354043..13354333 | 307..17 | 1455 | 100 | Minus |
2R | 25286936 | 2R | 13353812..13353892 | 388..308 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:45:32 has no hits.
BO16867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:58 Download gff for
BO16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:12 Download gff for
BO16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:10 Download gff for
BO16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 189..560 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:58 Download gff for
BO16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 1..375 | 17..391 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:35 Download gff for
BO16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17048-RA | 167..538 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:35 Download gff for
BO16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13353809..13353892 | 308..390 | 97 | <- | Minus |
2R | 13354043..13354333 | 17..307 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:10 Download gff for
BO16867.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9241314..9241397 | 308..390 | 97 | <- | Minus |
arm_2R | 9241548..9241838 | 17..307 | 100 | | Minus |
BO16867.pep Sequence
Translation from 16 to 406
> BO16867.pep
MVQQGLDATNFGLRSDYSSENGDHPSLFDTIKDGDQPDMCAFCLDRIQNP
EKLHCNHAFCKSCLALYREARNWVAKRCPICRSSLDMDGQVSRQFHDNWR
LFGIMMVPLMVLSLGPFYLLLLYWASFLDH
BO16867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17048-PB | 124 | CG17048-PB | 1..124 | 1..124 | 689 | 100 | Plus |
CG17048-PA | 124 | CG17048-PA | 1..124 | 1..124 | 689 | 100 | Plus |