Clone Sequence Records
BO16868.3prime Sequence
365 bp (365 high quality bases) assembled on 2006-10-13
> BO16868.3prime
ATGGTCTAGAAAGCTTGCATGAGTTTTGCTCCATTCCTCACGCTCTTCGC
GCTCCTTTTGCACTTCGTTAAGATAGGGCTCCAAGTACTTGATGTCCTCC
TCGTACTTGGTCCACTGCTCCTTGGGCAGGATCGTCTTGGTCATGGAAAG
GTGCAGTGCTCGAAGAATGCGATAGTTGCGTTCATCGTACAGTTTGCGGG
GCAGACGACGCACTGCTTCTGCCACATCCTCATTCTCGTACAGACAGTCA
TCGCGATACAGGCCGTATTGGTTGAATCCAGACATGTTGTAGGCCCACTT
TCCCAACTTGGAGAAAACCGCTGGGCCCACTCTAGCCACATATTTCGACA
TGTCGACTGATAACT
BO16868.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-PA | 336 | CG17856-RA | 1..333 | 351..19 | 1665 | 100 | Minus |
CG3560-PA | 336 | CG3560-RA | 205..266 | 147..86 | 235 | 95.1 | Minus |
CG3560-PA | 336 | CG3560-RA | 73..129 | 279..223 | 160 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-RA | 503 | CG17856-RA | 86..419 | 352..19 | 1670 | 100 | Minus |
CG3560-RA | 523 | CG3560-RA | 122..443 | 352..31 | 650 | 80.1 | Minus |
CG32576-RA | 1709 | CG32576-RA | 754..984 | 31..261 | 510 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28294133..28294466 | 352..19 | 1670 | 100 | Minus |
X | 23542271 | X | 16286678..16286908 | 261..31 | 510 | 81.4 | Minus |
Blast to na_te.dros performed 2015-02-11 09:09:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4959..5027 | 49..119 | 106 | 66.7 | Plus |
BO16868.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:17 Download gff for
BO16868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-PA | 1..336 | 16..351 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:43 Download gff for
BO16868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 86..419 | 19..352 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:07 Download gff for
BO16868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 86..419 | 19..352 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:07 Download gff for
BO16868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28294133..28294466 | 19..352 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:43 Download gff for
BO16868.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24119855..24120188 | 19..352 | 100 | | Minus |
BO16868.5prime Sequence
365 bp (365 high quality bases) assembled on 2006-10-13
> BO16868.5prime
GAAGTTATCAGTCGACATGTCGAAATATGTGGCTAGAGTGGGCCCAGCGG
TTTTCTCCAAGTTGGGAAAGTGGGCCTACAACATGTCTGGATTCAACCAA
TACGGCCTGTATCGCGATGACTGTCTGTACGAGAATGAGGATGTGGCAGA
AGCAGTGCGTCGTCTGCCCCGCAAACTGTACGATGAACGCAACTATCGCA
TTCTTCGAGCACTGCACCTTTCCATGACCAAGACGATCCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACATCAAGTACTTGGAGCCCTATCTTAA
CGAAGTGCAAAAGGAGCGCGAAGAGCGTGAGGAATGGAGCAAAACTCATG
CAAGCTTTCTAGACC
BO16868.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-PA | 336 | CG17856-RA | 1..333 | 17..349 | 1665 | 100 | Plus |
CG3560-PA | 336 | CG3560-RA | 205..266 | 221..282 | 235 | 95.1 | Plus |
CG3560-PA | 336 | CG3560-RA | 73..129 | 89..145 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-RA | 503 | CG17856-RA | 86..419 | 16..349 | 1670 | 100 | Plus |
CG3560-RA | 523 | CG3560-RA | 122..443 | 16..337 | 650 | 80.1 | Plus |
CG32576-RA | 1709 | CG32576-RA | 754..984 | 337..107 | 510 | 81.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:32:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28294133..28294466 | 16..349 | 1670 | 100 | Plus |
X | 23542271 | X | 16286678..16286908 | 107..337 | 510 | 81.4 | Plus |
Blast to na_te.dros performed 2015-02-11 17:32:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4959..5027 | 319..249 | 106 | 66.7 | Minus |
BO16868.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:18 Download gff for
BO16868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-PA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:42 Download gff for
BO16868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 86..419 | 16..349 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:15:35 Download gff for
BO16868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 86..419 | 16..349 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:15:35 Download gff for
BO16868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28294133..28294466 | 16..349 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:42 Download gff for
BO16868.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24119855..24120188 | 16..349 | 100 | | Plus |
BO16868.complete Sequence
367 bp assembled on 2006-10-11
GenBank Submission: FJ633954
> BO16868.complete
GAAGTTATCAGTCGACATGTCGAAATATGTGGCTAGAGTGGGCCCAGCGG
TTTTCTCCAAGTTGGGAAAGTGGGCCTACAACATGTCTGGATTCAACCAA
TACGGCCTGTATCGCGATGACTGTCTGTACGAGAATGAGGATGTGGCAGA
AGCAGTGCGTCGTCTGCCCCGCAAACTGTACGATGAACGCAACTATCGCA
TTCTTCGAGCACTGCACCTTTCCATGACCAAGACGATCCTGCCCAAGGAG
CAGTGGACCAAGTACGAGGAGGACATCAAGTACTTGGAGCCCTATCTTAA
CGAAGTGCAAAAGGAGCGCGAAGAGCGTGAGGAATGGAGCAAAACTCATG
CAAGCTTTCTAGACCAT
BO16868.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-RA | 336 | CG17856-PA | 1..333 | 17..349 | 1665 | 100 | Plus |
CG3560-RA | 336 | CG3560-PA | 1..321 | 17..337 | 645 | 80.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-RA | 503 | CG17856-RA | 86..419 | 16..349 | 1670 | 100 | Plus |
CG3560-RA | 523 | CG3560-RA | 122..443 | 16..337 | 650 | 80.1 | Plus |
CG32576-RA | 1709 | CG32576-RA | 754..984 | 337..107 | 510 | 81.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 28294133..28294466 | 16..349 | 1670 | 100 | Plus |
X | 23542271 | X | 16286678..16286908 | 107..337 | 510 | 81.4 | Plus |
Blast to na_te.dros performed 2014-11-27 11:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
accord2 | 7650 | accord2 QBERT 7650bp | 4959..5027 | 319..249 | 106 | 66.7 | Minus |
BO16868.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:29 Download gff for
BO16868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:26 Download gff for
BO16868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:32 Download gff for
BO16868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 87..419 | 17..351 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:29 Download gff for
BO16868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 1..336 | 17..352 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:00 Download gff for
BO16868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17856-RA | 87..419 | 17..351 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:00 Download gff for
BO16868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 28294134..28294466 | 17..351 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:32 Download gff for
BO16868.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 24119856..24120188 | 17..351 | 99 | | Plus |
BO16868.pep Sequence
Translation from 16 to 367
> BO16868.pep
MSKYVARVGPAVFSKLGKWAYNMSGFNQYGLYRDDCLYENEDVAEAVRRL
PRKLYDERNYRILRALHLSMTKTILPKEQWTKYEEDIKYLEPYLNEVQKE
REEREEWSKTHASFLDH
BO16868.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17856-PA | 111 | CG17856-PA | 1..111 | 1..111 | 596 | 100 | Plus |
CG3560-PA | 111 | CG3560-PA | 1..111 | 1..111 | 528 | 85.6 | Plus |