Clone BO16869 Report

Search the DGRC for BO16869

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCpr67Fb-RA
Protein status:BO16869.pep: validated full length
Sequenced Size:400

Clone Sequence Records

BO16869.3prime Sequence

398 bp (398 high quality bases) assembled on 2006-10-13

> BO16869.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCAGCTGAATCCTCTGGAATGGATGCG
CTTCGATGTAGGCCAAAGCCTTGAGGATGTAATCAGGAATGGGAGGCGGC
GTGGGCAGATGAGCACCAGTAGGACGATATCCGTTCTCATCGGCAGTGTA
CTCCAGCTGGATGGGTGTTCCATCGGGAGCAGCGTAGCTCACGGATCCGG
CAGCTTGGACTCCACCCACTCCACTCTCCTGGGCATCGATGCCGTTGGAC
GTTCCGTATTCCCAGCTGTATGAGCCATCCGGCTTGATCTCGTTGCGGTA
CTTGGTGGTCTCGGCCTGAGATTCGTCTGCAGCCCGGATGGCGGCCACCA
GGAACAGGGAAATGATTAGCGCGGTCTTGATCATGTCGACTGATAACT

BO16869.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG18348-PA 369 CG18348-RA 1..366 384..19 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fb-RA 457 CG18348-RA 19..384 384..19 1830 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10894267..10894620 372..19 1770 100 Minus
Blast to na_te.dros performed on 2015-02-12 17:46:30 has no hits.

BO16869.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:19 Download gff for BO16869.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18348-PA 1..369 18..384 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:04 Download gff for BO16869.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 12..384 19..392 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:28 Download gff for BO16869.3prime
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 12..384 19..392 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:28 Download gff for BO16869.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10894267..10894620 19..372 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:04 Download gff for BO16869.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10887367..10887720 19..372 100   Minus

BO16869.5prime Sequence

398 bp (398 high quality bases) assembled on 2006-10-13

> BO16869.5prime
GAAGTTATCAGTCGACATGATCAAGACCGCGCTAATCATTTCCCTGTTCC
TGGTGGCCGCCATCCGGGCTGCAGACGAATCTCAGGCCGAGACCACCAAG
TACCGCAACGAGATCAAGCCGGATGGCTCATACAGCTGGGAATACGGAAC
GTCCAACGGCATCGATGCCCAGGAGAGTGGAGTGGGTGGAGTCCAAGCTG
CCGGATCCGTGAGCTACGCTGCTCCCGATGGAACACCCATCCAGCTGGAG
TACACTGCCGATGAGAACGGATATCGTCCTACTGGTGCTCATCTGCCCAC
GCCGCCTCCCATTCCTGATTACATCCTCAAGGCTTTGGCCTACATCGAAG
CGCATCCATTCCAGAGGATTCAGCTGAAGAAGGCAAGCTTTCTAGACC

BO16869.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18348-PA 369 CG18348-RA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fb-RA 457 CG18348-RA 19..384 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10894267..10894620 29..382 1770 100 Plus
Blast to na_te.dros performed on 2015-01-30 17:51:12 has no hits.

BO16869.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:20 Download gff for BO16869.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18348-PA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:05 Download gff for BO16869.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 12..384 9..382 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:43 Download gff for BO16869.5prime
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 12..384 9..382 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:43 Download gff for BO16869.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10894267..10894620 29..382 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:05 Download gff for BO16869.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10887367..10887720 29..382 100   Plus

BO16869.complete Sequence

400 bp assembled on 2006-10-11

GenBank Submission: FJ633955

> BO16869.complete
GAAGTTATCAGTCGACATGATCAAGACCGCGCTAATCATTTCCCTGTTCC
TGGTGGCCGCCATCCGGGCTGCAGACGAATCTCAGGCCGAGACCACCAAG
TACCGCAACGAGATCAAGCCGGATGGCTCATACAGCTGGGAATACGGAAC
GTCCAACGGCATCGATGCCCAGGAGAGTGGAGTGGGTGGAGTCCAAGCTG
CCGGATCCGTGAGCTACGCTGCTCCCGATGGAACACCCATCCAGCTGGAG
TACACTGCCGATGAGAACGGATATCGTCCTACTGGTGCTCATCTGCCCAC
GCCGCCTCCCATTCCTGATTACATCCTCAAGGCTTTGGCCTACATCGAAG
CGCATCCATTCCAGAGGATTCAGCTGAAGAAGGCAAGCTTTCTAGACCAT

BO16869.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fb-RA 369 CG18348-PA 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fb-RA 457 CG18348-RA 19..384 17..382 1830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10894267..10894620 29..382 1770 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:39:08 has no hits.

BO16869.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:55 Download gff for BO16869.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:06 Download gff for BO16869.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:41 Download gff for BO16869.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 19..384 17..384 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:55 Download gff for BO16869.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 1..369 17..383 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:26 Download gff for BO16869.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr67Fb-RA 19..384 17..384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:26 Download gff for BO16869.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10894267..10894620 29..384 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:41 Download gff for BO16869.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10887367..10887720 29..384 99   Plus

BO16869.pep Sequence

Translation from 16 to 400

> BO16869.pep
MIKTALIISLFLVAAIRAADESQAETTKYRNEIKPDGSYSWEYGTSNGID
AQESGVGGVQAAGSVSYAAPDGTPIQLEYTADENGYRPTGAHLPTPPPIP
DYILKALAYIEAHPFQRIQLKKASFLDH

BO16869.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr67Fb-PA 122 CG18348-PA 1..122 1..122 632 100 Plus
Cpr65Ec-PA 127 CG8634-PA 7..127 6..125 335 53.7 Plus
Cpr67Fa2-PA 134 CG18349-PA 1..131 1..122 297 48.1 Plus
Cpr67Fa1-PA 134 CG7941-PA 1..117 1..114 296 50.4 Plus
Cpr65Eb-PA 179 CG8638-PA 4..121 2..114 271 45.8 Plus