Clone Sequence Records
BO16869.3prime Sequence
398 bp (398 high quality bases) assembled on 2006-10-13
> BO16869.3prime
ATGGTCTAGAAAGCTTGCCTTCTTCAGCTGAATCCTCTGGAATGGATGCG
CTTCGATGTAGGCCAAAGCCTTGAGGATGTAATCAGGAATGGGAGGCGGC
GTGGGCAGATGAGCACCAGTAGGACGATATCCGTTCTCATCGGCAGTGTA
CTCCAGCTGGATGGGTGTTCCATCGGGAGCAGCGTAGCTCACGGATCCGG
CAGCTTGGACTCCACCCACTCCACTCTCCTGGGCATCGATGCCGTTGGAC
GTTCCGTATTCCCAGCTGTATGAGCCATCCGGCTTGATCTCGTTGCGGTA
CTTGGTGGTCTCGGCCTGAGATTCGTCTGCAGCCCGGATGGCGGCCACCA
GGAACAGGGAAATGATTAGCGCGGTCTTGATCATGTCGACTGATAACT
BO16869.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18348-PA | 369 | CG18348-RA | 1..366 | 384..19 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fb-RA | 457 | CG18348-RA | 19..384 | 384..19 | 1830 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10894267..10894620 | 372..19 | 1770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 17:46:30 has no hits.
BO16869.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:19 Download gff for
BO16869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18348-PA | 1..369 | 18..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:04 Download gff for
BO16869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 12..384 | 19..392 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:43:28 Download gff for
BO16869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 12..384 | 19..392 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:43:28 Download gff for
BO16869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10894267..10894620 | 19..372 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:04 Download gff for
BO16869.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10887367..10887720 | 19..372 | 100 | | Minus |
BO16869.5prime Sequence
398 bp (398 high quality bases) assembled on 2006-10-13
> BO16869.5prime
GAAGTTATCAGTCGACATGATCAAGACCGCGCTAATCATTTCCCTGTTCC
TGGTGGCCGCCATCCGGGCTGCAGACGAATCTCAGGCCGAGACCACCAAG
TACCGCAACGAGATCAAGCCGGATGGCTCATACAGCTGGGAATACGGAAC
GTCCAACGGCATCGATGCCCAGGAGAGTGGAGTGGGTGGAGTCCAAGCTG
CCGGATCCGTGAGCTACGCTGCTCCCGATGGAACACCCATCCAGCTGGAG
TACACTGCCGATGAGAACGGATATCGTCCTACTGGTGCTCATCTGCCCAC
GCCGCCTCCCATTCCTGATTACATCCTCAAGGCTTTGGCCTACATCGAAG
CGCATCCATTCCAGAGGATTCAGCTGAAGAAGGCAAGCTTTCTAGACC
BO16869.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18348-PA | 369 | CG18348-RA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fb-RA | 457 | CG18348-RA | 19..384 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:51:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10894267..10894620 | 29..382 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:51:12 has no hits.
BO16869.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:20 Download gff for
BO16869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18348-PA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:51:05 Download gff for
BO16869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 12..384 | 9..382 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:05:43 Download gff for
BO16869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 12..384 | 9..382 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:05:43 Download gff for
BO16869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10894267..10894620 | 29..382 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:51:05 Download gff for
BO16869.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10887367..10887720 | 29..382 | 100 | | Plus |
BO16869.complete Sequence
400 bp assembled on 2006-10-11
GenBank Submission: FJ633955
> BO16869.complete
GAAGTTATCAGTCGACATGATCAAGACCGCGCTAATCATTTCCCTGTTCC
TGGTGGCCGCCATCCGGGCTGCAGACGAATCTCAGGCCGAGACCACCAAG
TACCGCAACGAGATCAAGCCGGATGGCTCATACAGCTGGGAATACGGAAC
GTCCAACGGCATCGATGCCCAGGAGAGTGGAGTGGGTGGAGTCCAAGCTG
CCGGATCCGTGAGCTACGCTGCTCCCGATGGAACACCCATCCAGCTGGAG
TACACTGCCGATGAGAACGGATATCGTCCTACTGGTGCTCATCTGCCCAC
GCCGCCTCCCATTCCTGATTACATCCTCAAGGCTTTGGCCTACATCGAAG
CGCATCCATTCCAGAGGATTCAGCTGAAGAAGGCAAGCTTTCTAGACCAT
BO16869.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fb-RA | 369 | CG18348-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fb-RA | 457 | CG18348-RA | 19..384 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10894267..10894620 | 29..382 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:39:08 has no hits.
BO16869.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:55 Download gff for
BO16869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:06 Download gff for
BO16869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:41 Download gff for
BO16869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 19..384 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:55 Download gff for
BO16869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 1..369 | 17..383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:26 Download gff for
BO16869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr67Fb-RA | 19..384 | 17..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:26 Download gff for
BO16869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10894267..10894620 | 29..384 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:41 Download gff for
BO16869.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10887367..10887720 | 29..384 | 99 | | Plus |
BO16869.pep Sequence
Translation from 16 to 400
> BO16869.pep
MIKTALIISLFLVAAIRAADESQAETTKYRNEIKPDGSYSWEYGTSNGID
AQESGVGGVQAAGSVSYAAPDGTPIQLEYTADENGYRPTGAHLPTPPPIP
DYILKALAYIEAHPFQRIQLKKASFLDH
BO16869.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr67Fb-PA | 122 | CG18348-PA | 1..122 | 1..122 | 632 | 100 | Plus |
Cpr65Ec-PA | 127 | CG8634-PA | 7..127 | 6..125 | 335 | 53.7 | Plus |
Cpr67Fa2-PA | 134 | CG18349-PA | 1..131 | 1..122 | 297 | 48.1 | Plus |
Cpr67Fa1-PA | 134 | CG7941-PA | 1..117 | 1..114 | 296 | 50.4 | Plus |
Cpr65Eb-PA | 179 | CG8638-PA | 4..121 | 2..114 | 271 | 45.8 | Plus |