Clone Sequence Records
BO16871.3prime Sequence
317 bp (317 high quality bases) assembled on 2006-10-13
> BO16871.3prime
ATGGTCTAGAAAGCTTGCGTGCACCACGGGACCCAGCGGCTCGCCCCTAA
TGTTGGCCAAATCCAGGCGGGAGTCGATGGTCTCGTCTATCAGTCCGATC
ACCGCGATGTTGTCCCCCCGGATGATGTGCAGTCCCAGCACGATTTGCTC
GATGCCGGAGGTGGTAGAGAAGACGCGCTCATGGCACTCGTCTATGATGA
TATTGATGGTCTGGTCGAATCCCTTGAGTGTCCCGATGAAGTTCCGTCCG
TCTGCCGTAATGATGGAGACTGTGTGATTGATATACGACTCCAGACCGGA
CATGTCGACTGATAACT
BO16871.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-PA | 288 | CG2021-RA | 1..285 | 303..19 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-RA | 402 | CG2021-RA | 82..366 | 303..19 | 1425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777046..1777330 | 19..303 | 1425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:09:17 has no hits.
BO16871.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:23 Download gff for
BO16871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-PA | 1..288 | 18..303 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:46 Download gff for
BO16871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..366 | 19..303 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:14:18 Download gff for
BO16871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..366 | 19..303 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:14:18 Download gff for
BO16871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777046..1777330 | 19..303 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:46 Download gff for
BO16871.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777046..1777330 | 19..303 | 100 | | Plus |
BO16871.5prime Sequence
317 bp (317 high quality bases) assembled on 2006-10-13
> BO16871.5prime
GAAGTTATCAGTCGACATGTCCGGTCTGGAGTCGTATATCAATCACACAG
TCTCCATCATTACGGCAGACGGACGGAACTTCATCGGGACACTCAAGGGA
TTCGACCAGACCATCAATATCATCATAGACGAGTGCCATGAGCGCGTCTT
CTCTACCACCTCCGGCATCGAGCAAATCGTGCTGGGACTGCACATCATCC
GGGGGGACAACATCGCGGTGATCGGACTGATAGACGAGACCATCGACTCC
CGCCTGGATTTGGCCAACATTAGGGGCGAGCCGCTGGGTCCCGTGGTGCA
CGCAAGCTTTCTAGACC
BO16871.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-PA | 288 | CG2021-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:00:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-RA | 402 | CG2021-RA | 82..366 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777046..1777330 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:00:44 has no hits.
BO16871.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:23 Download gff for
BO16871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-PA | 1..288 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:15 Download gff for
BO16871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..366 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:41:58 Download gff for
BO16871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..366 | 17..301 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:41:58 Download gff for
BO16871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777046..1777330 | 17..301 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:15 Download gff for
BO16871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777046..1777330 | 17..301 | 100 | | Minus |
BO16871.complete Sequence
319 bp assembled on 2006-10-11
GenBank Submission: FJ633956
> BO16871.complete
GAAGTTATCAGTCGACATGTCCGGTCTGGAGTCGTATATCAATCACACAG
TCTCCATCATTACGGCAGACGGACGGAACTTCATCGGGACACTCAAGGGA
TTCGACCAGACCATCAATATCATCATAGACGAGTGCCATGAGCGCGTCTT
CTCTACCACCTCCGGCATCGAGCAAATCGTGCTGGGACTGCACATCATCC
GGGGGGACAACATCGCGGTGATCGGACTGATAGACGAGACCATCGACTCC
CGCCTGGATTTGGCCAACATTAGGGGCGAGCCGCTGGGTCCCGTGGTGCA
CGCAAGCTTTCTAGACCAT
BO16871.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:43:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-RA | 288 | CG2021-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-RA | 402 | CG2021-RA | 82..366 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1777046..1777330 | 301..17 | 1425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:43:28 has no hits.
BO16871.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:57 Download gff for
BO16871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 1..288 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:37 Download gff for
BO16871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 34..318 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:42:55 Download gff for
BO16871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..366 | 17..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:57 Download gff for
BO16871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 34..318 | 17..301 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:17 Download gff for
BO16871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2021-RA | 82..366 | 17..303 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:17 Download gff for
BO16871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1777044..1777330 | 17..303 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:42:55 Download gff for
BO16871.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1777044..1777330 | 17..303 | 99 | | Minus |
BO16871.pep Sequence
Translation from 16 to 319
> BO16871.pep
MSGLESYINHTVSIITADGRNFIGTLKGFDQTINIIIDECHERVFSTTSG
IEQIVLGLHIIRGDNIAVIGLIDETIDSRLDLANIRGEPLGPVVHASFLD
H
BO16871.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2021-PA | 95 | CG2021-PA | 1..95 | 1..95 | 482 | 100 | Plus |
