Clone Sequence Records
BO16872.5prime Sequence
314 bp (314 high quality bases) assembled on 2006-10-13
> BO16872.5prime
GAAGTTATCAGTCGACATGCCGATCTTTGATATCCGGCTTATGGGCAATA
TGCCCGCCAATACCGCTGGTCTGTGGAAGCGTGTCACCTTCCTGCTGGCC
CTACCGGCCATCGTCCTGTGCGCCGCAAACGCCTTCACCGGACACAAGCA
CGTGGAGCGGGAGCCGTTCGCCAAGTACGAGTACCTGAGGCGGCGGACCA
AACGATTCCCATGGGGAGATGGCAATCGCAGTTTGTTTCACAATGCCGAG
GTGAATGCCCTGCCCGAGGGCTACGAGGATGAGGTGGCTGAGGAGGATGC
AAGCTTTCTAGACC
BO16872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30093-PA | 285 | CG30093-RA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30093-RA | 540 | CG30093-RA | 85..368 | 15..298 | 1420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:08:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15944112..15944395 | 15..298 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:08:42 has no hits.
BO16872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:25 Download gff for
BO16872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-PA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:49 Download gff for
BO16872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 80..371 | 9..302 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:57 Download gff for
BO16872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 80..371 | 9..302 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:57 Download gff for
BO16872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15944107..15944398 | 9..302 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:49 Download gff for
BO16872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11831612..11831903 | 9..302 | 98 | | Plus |
BO16872.3prime Sequence
314 bp (314 high quality bases) assembled on 2006-10-13
> BO16872.3prime
ATGGTCTAGAAAGCTTGCATCCTCCTCAGCCACCTCATCCTCGTAGCCCT
CGGGCAGGGCATTCACCTCGGCATTGTGAAACAAACTGCGATTGCCATCT
CCCCATGGGAATCGTTTGGTCCGCCGCCTCAGGTACTCGTACTTGGCGAA
CGGCTCCCGCTCCACGTGCTTGTGTCCGGTGAAGGCGTTTGCGGCGCACA
GGACGATGGCCGGTAGGGCCAGCAGGAAGGTGACACGCTTCCACAGACCA
GCGGTATTGGCGGGCATATTGCCCATAAGCCGGATATCAAAGATCGGCAT
GTCGACTGATAACT
BO16872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30093-PA | 285 | CG30093-RA | 1..282 | 300..19 | 1410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:09:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30093-RA | 540 | CG30093-RA | 85..368 | 302..19 | 1420 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15944112..15944395 | 302..19 | 1420 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:09:27 has no hits.
BO16872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:23 Download gff for
BO16872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-PA | 1..285 | 15..300 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:13 Download gff for
BO16872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 80..371 | 15..308 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:40 Download gff for
BO16872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 80..371 | 15..308 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:40 Download gff for
BO16872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15944107..15944398 | 15..308 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:13 Download gff for
BO16872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11831612..11831903 | 15..308 | 98 | | Minus |
BO16872.complete Sequence
316 bp assembled on 2006-10-11
GenBank Submission: FJ633957
> BO16872.complete
GAAGTTATCAGTCGACATGCCGATCTTTGATATCCGGCTTATGGGCAATA
TGCCCGCCAATACCGCTGGTCTGTGGAAGCGTGTCACCTTCCTGCTGGCC
CTACCGGCCATCGTCCTGTGCGCCGCAAACGCCTTCACCGGACACAAGCA
CGTGGAGCGGGAGCCGTTCGCCAAGTACGAGTACCTGAGGCGGCGGACCA
AACGATTCCCATGGGGAGATGGCAATCGCAGTTTGTTTCACAATGCCGAG
GTGAATGCCCTGCCCGAGGGCTACGAGGATGAGGTGGCTGAGGAGGATGC
AAGCTTTCTAGACCAT
BO16872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30093-RA | 285 | CG30093-PA | 1..282 | 17..298 | 1410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:58:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30093-RA | 540 | CG30093-RA | 85..368 | 15..298 | 1420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15944112..15944395 | 15..298 | 1420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:58:08 has no hits.
BO16872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:05 Download gff for
BO16872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 1..285 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:47 Download gff for
BO16872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 65..356 | 9..302 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:00:43 Download gff for
BO16872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 87..368 | 17..300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:05 Download gff for
BO16872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 65..356 | 9..302 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:59:23 Download gff for
BO16872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30093-RA | 87..368 | 17..300 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:59:23 Download gff for
BO16872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15944114..15944395 | 17..300 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:00:43 Download gff for
BO16872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11831619..11831900 | 17..300 | 99 | | Plus |
BO16872.pep Sequence
Translation from 16 to 316
> BO16872.pep
MPIFDIRLMGNMPANTAGLWKRVTFLLALPAIVLCAANAFTGHKHVEREP
FAKYEYLRRRTKRFPWGDGNRSLFHNAEVNALPEGYEDEVAEEDASFLDH
BO16872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30093-PA | 94 | CG30093-PA | 1..94 | 1..94 | 506 | 100 | Plus |
levy-PB | 109 | CG17280-PB | 37..108 | 19..87 | 234 | 56.9 | Plus |
levy-PA | 109 | CG17280-PA | 37..108 | 19..87 | 234 | 56.9 | Plus |
CG14077-PB | 289 | CG14077-PB | 155..234 | 14..92 | 168 | 43.8 | Plus |
CG14077-PC | 289 | CG14077-PC | 155..234 | 14..92 | 168 | 43.8 | Plus |