Clone BO16873 Report

Search the DGRC for BO16873

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG30354-RA
Protein status:BO16873.pep: validated full length
Sequenced Size:292

Clone Sequence Records

BO16873.3prime Sequence

290 bp (290 high quality bases) assembled on 2006-10-13

> BO16873.3prime
ATGGTCTAGAAAGCTTGCTTTGAGTTTCGAGAAGAGACTGTGAGCAACGC
AATGATCCAATTCAGCGACGAAGTCGAACAATTCCTCCATGCATGTCTCA
GTGGTTTTGGACTTGCCATTCACACGATCATTGCACTCTTGATACTTGTT
GTACAGGGACGCAATGTGACCTTTGGCCTGGCACTTCTCCCTAAGGGCTG
CTTGCGGATCAACTAACTCCTTTTCGTCATCATCGGCCTTGAGGACAGGC
ACCAAAACCCGGCTATTAAACGCCATGTCGACTGATAACT

BO16873.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG30354-PA 261 CG30354-RA 1..258 276..19 1290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG30354-RB 443 CG30354-RB 117..374 276..19 1290 100 Minus
CG30354-RA 387 CG30354-RA 61..318 276..19 1290 100 Minus
Ucrh-RD 506 CG41623-RD 136..333 232..35 435 81.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8677335..8677592 276..19 1290 100 Minus
3L 28110227 3L 25121043..25121198 190..35 345 81.4 Minus
Blast to na_te.dros performed on 2015-02-10 17:41:03 has no hits.

BO16873.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:26 Download gff for BO16873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30354-PA 1..261 18..276 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:12 Download gff for BO16873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 57..325 9..283 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:12 Download gff for BO16873.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 57..325 9..283 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:12 Download gff for BO16873.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8677331..8677594 17..283 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:12 Download gff for BO16873.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4564836..4565099 17..283 98 -> Minus

BO16873.5prime Sequence

290 bp (290 high quality bases) assembled on 2006-10-13

> BO16873.5prime
GAAGTTATCAGTCGACATGGCGTTTAATAGCCGGGTTTTGGTGCCTGTCC
TCAAGGCCGATGATGACGAAAAGGAGTTAGTTGATCCGCAAGCAGCCCTT
AGGGAGAAGTGCCAGGCCAAAGGTCACATTGCGTCCCTGTACAACAAGTA
TCAAGAGTGCAATGATCGTGTGAATGGCAAGTCCAAAACCACTGAGACAT
GCATGGAGGAATTGTTCGACTTCGTCGCTGAATTGGATCATTGCGTTGCT
CACAGTCTCTTCTCGAAACTCAAAGCAAGCTTTCTAGACC

BO16873.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG30354-PA 261 CG30354-RA 1..258 17..274 1290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30354-RB 443 CG30354-RB 117..374 17..274 1290 100 Plus
CG30354-RA 387 CG30354-RA 61..318 17..274 1290 100 Plus
Ucrh-RD 506 CG41623-RD 136..333 61..258 435 81.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8677335..8677592 17..274 1290 100 Plus
3L 28110227 3L 25121043..25121198 103..258 345 81.4 Plus
Blast to na_te.dros performed on 2015-02-12 03:54:57 has no hits.

BO16873.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:27 Download gff for BO16873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30354-PA 1..261 17..275 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:01 Download gff for BO16873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 57..325 10..284 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:05 Download gff for BO16873.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 57..325 10..284 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:05 Download gff for BO16873.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8677331..8677594 10..276 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:01 Download gff for BO16873.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4564836..4565099 10..276 98 -> Plus

BO16873.complete Sequence

292 bp assembled on 2006-10-11

GenBank Submission: FJ633958

> BO16873.complete
GAAGTTATCAGTCGACATGGCGTTTAATAGCCGGGTTTTGGTGCCTGTCC
TCAAGGCCGATGATGACGAAAAGGAGTTAGTTGATCCGCAAGCAGCCCTT
AGGGAGAAGTGCCAGGCCAAAGGTCACATTGCGTCCCTGTACAACAAGTA
TCAAGAGTGCAATGATCGTGTGAATGGCAAGTCCAAAACCACTGAGACAT
GCATGGAGGAATTGTTCGACTTCGTCGCTGAATTGGATCATTGCGTTGCT
CACAGTCTCTTCTCGAAACTCAAAGCAAGCTTTCTAGACCAT

BO16873.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30354-RB 261 CG30354-PB 1..258 17..274 1290 100 Plus
CG30354-RA 261 CG30354-PA 1..258 17..274 1290 100 Plus
Ucrh-RD 258 CG41623-PD 42..239 61..258 435 81.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30354-RB 443 CG30354-RB 117..374 17..274 1290 100 Plus
CG30354-RA 387 CG30354-RA 61..318 17..274 1290 100 Plus
Ucrh-RD 506 CG41623-RD 136..333 61..258 435 81.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8677335..8677592 17..274 1290 100 Plus
3L 28110227 3L 25121043..25121198 103..258 345 81.4 Plus
Blast to na_te.dros performed on 2014-11-27 14:43:12 has no hits.

BO16873.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:50 Download gff for BO16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 1..261 17..275 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:26 Download gff for BO16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 5..273 10..284 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:32 Download gff for BO16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 61..318 17..276 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:50 Download gff for BO16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 5..273 10..284 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:51:21 Download gff for BO16873.complete
Subject Subject Range Query Range Percent Splice Strand
CG30354-RA 61..318 17..276 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:51:21 Download gff for BO16873.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8677335..8677592 17..276 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:32 Download gff for BO16873.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4564840..4565097 17..276 99   Plus

BO16873.pep Sequence

Translation from 16 to 292

> BO16873.pep
MAFNSRVLVPVLKADDDEKELVDPQAALREKCQAKGHIASLYNKYQECND
RVNGKSKTTETCMEELFDFVAELDHCVAHSLFSKLKASFLDH

BO16873.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG30354-PB 86 CG30354-PB 1..86 1..86 450 100 Plus
CG30354-PA 86 CG30354-PA 1..86 1..86 450 100 Plus
Ucrh-PD 85 CG41623-PD 1..85 1..86 360 77.9 Plus
Ucrh-PC 85 CG41623-PC 1..85 1..86 360 77.9 Plus
Ucrh-PB 85 CG41623-PB 1..85 1..86 360 77.9 Plus