Clone Sequence Records
BO16874.3prime Sequence
335 bp (335 high quality bases) assembled on 2006-10-13
> BO16874.3prime
ATGGTCTAGAAAGCTTGCATCGAAGTTGAAACGCCTCTTGCCGTCGAACC
TATAGCCATAGGCCGCCGCGTTCTTGGTGTCCACTAGCGCTGGGTTCCGG
TGCTTGAAGAAGCTGCCATGTCCGTGTGCGGGTCGCGATGCGCTATTGGG
GATTCCCTCCACCTCACGGGGATAAAAGGCCTCGAACATCCCCTCCGGTG
GCAGGCAGCACTCGGCTATCTTAGGATCATTGGGATCGTAGGCAGCCACT
CTTCCTGGTCCCGAAAGTACGGTCAGCCCGAGCACAAACAAAGCCTTGAG
CAATAGCGCAGTTACGCTCATGTCGACTGATAACT
BO16874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30380-PA | 306 | CG30380-RA | 1..303 | 321..19 | 1515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30380-RA | 459 | CG30380-RA | 102..404 | 321..19 | 1515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7939256..7939558 | 19..321 | 1515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:41:50 has no hits.
BO16874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:28 Download gff for
BO16874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-PA | 1..306 | 18..321 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:16 Download gff for
BO16874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 102..409 | 11..321 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:19 Download gff for
BO16874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 102..409 | 11..321 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:19 Download gff for
BO16874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7939251..7939558 | 11..321 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:16 Download gff for
BO16874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3826756..3827063 | 11..321 | 98 | | Plus |
BO16874.5prime Sequence
335 bp (335 high quality bases) assembled on 2006-10-13
> BO16874.5prime
GAAGTTATCAGTCGACATGAGCGTAACTGCGCTATTGCTCAAGGCTTTGT
TTGTGCTCGGGCTGACCGTACTTTCGGGACCAGGAAGAGTGGCTGCCTAC
GATCCCAATGATCCTAAGATAGCCGAGTGCTGCCTGCCACCGGAGGGGAT
GTTCGAGGCCTTTTATCCCCGTGAGGTGGAGGGAATCCCCAATAGCGCAT
CGCGACCCGCACACGGACATGGCAGCTTCTTCAAGCACCGGAACCCAGCG
CTAGTGGACACCAAGAACGCGGCGGCCTATGGCTATAGGTTCGACGGCAA
GAGGCGTTTCAACTTCGATGCAAGCTTTCTAGACC
BO16874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30380-PA | 306 | CG30380-RA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30380-RA | 459 | CG30380-RA | 102..404 | 17..319 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7939256..7939558 | 319..17 | 1515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:41:32 has no hits.
BO16874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:29 Download gff for
BO16874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-PA | 1..306 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:33 Download gff for
BO16874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 102..409 | 17..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:42 Download gff for
BO16874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 102..409 | 17..327 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:42 Download gff for
BO16874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7939251..7939558 | 17..327 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:33 Download gff for
BO16874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3826756..3827063 | 17..327 | 98 | | Minus |
BO16874.complete Sequence
337 bp assembled on 2006-10-11
GenBank Submission: FJ633959
> BO16874.complete
GAAGTTATCAGTCGACATGAGCGTAACTGCGCTATTGCTCAAGGCTTTGT
TTGTGCTCGGGCTGACCGTACTTTCGGGACCAGGAAGAGTGGCTGCCTAC
GATCCCAATGATCCTAAGATAGCCGAGTGCTGCCTGCCACCGGAGGGGAT
GTTCGAGGCCTTTTATCCCCGTGAGGTGGAGGGAATCCCCAATAGCGCAT
CGCGACCCGCACACGGACATGGCAGCTTCTTCAAGCACCGGAACCCAGCG
CTAGTGGACACCAAGAACGCGGCGGCCTATGGCTATAGGTTCGACGGCAA
GAGGCGTTTCAACTTCGATGCAAGCTTTCTAGACCAT
BO16874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30380-RA | 306 | CG30380-PA | 1..303 | 17..319 | 1515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30380-RA | 459 | CG30380-RA | 102..404 | 17..319 | 1515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7939256..7939558 | 319..17 | 1515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:08:47 has no hits.
BO16874.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:10 Download gff for
BO16874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 1..306 | 17..320 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:55 Download gff for
BO16874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 82..389 | 17..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:42 Download gff for
BO16874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 102..404 | 17..321 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:10 Download gff for
BO16874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 82..389 | 17..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:01 Download gff for
BO16874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30380-RA | 102..404 | 17..321 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:01 Download gff for
BO16874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7939254..7939558 | 17..321 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:42 Download gff for
BO16874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3826759..3827063 | 17..321 | 99 | | Minus |
BO16874.pep Sequence
Translation from 16 to 337
> BO16874.pep
MSVTALLLKALFVLGLTVLSGPGRVAAYDPNDPKIAECCLPPEGMFEAFY
PREVEGIPNSASRPAHGHGSFFKHRNPALVDTKNAAAYGYRFDGKRRFNF
DASFLDH
BO16874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30380-PA | 101 | CG30380-PA | 1..101 | 1..101 | 541 | 100 | Plus |