Clone BO16874 Report

Search the DGRC for BO16874

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG30380-RA
Protein status:BO16874.pep: validated full length
Sequenced Size:337

Clone Sequence Records

BO16874.3prime Sequence

335 bp (335 high quality bases) assembled on 2006-10-13

> BO16874.3prime
ATGGTCTAGAAAGCTTGCATCGAAGTTGAAACGCCTCTTGCCGTCGAACC
TATAGCCATAGGCCGCCGCGTTCTTGGTGTCCACTAGCGCTGGGTTCCGG
TGCTTGAAGAAGCTGCCATGTCCGTGTGCGGGTCGCGATGCGCTATTGGG
GATTCCCTCCACCTCACGGGGATAAAAGGCCTCGAACATCCCCTCCGGTG
GCAGGCAGCACTCGGCTATCTTAGGATCATTGGGATCGTAGGCAGCCACT
CTTCCTGGTCCCGAAAGTACGGTCAGCCCGAGCACAAACAAAGCCTTGAG
CAATAGCGCAGTTACGCTCATGTCGACTGATAACT

BO16874.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG30380-PA 306 CG30380-RA 1..303 321..19 1515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG30380-RA 459 CG30380-RA 102..404 321..19 1515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:41:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7939256..7939558 19..321 1515 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:41:50 has no hits.

BO16874.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:28 Download gff for BO16874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30380-PA 1..306 18..321 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:16 Download gff for BO16874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 102..409 11..321 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:19 Download gff for BO16874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 102..409 11..321 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:19 Download gff for BO16874.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7939251..7939558 11..321 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:16 Download gff for BO16874.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3826756..3827063 11..321 98   Plus

BO16874.5prime Sequence

335 bp (335 high quality bases) assembled on 2006-10-13

> BO16874.5prime
GAAGTTATCAGTCGACATGAGCGTAACTGCGCTATTGCTCAAGGCTTTGT
TTGTGCTCGGGCTGACCGTACTTTCGGGACCAGGAAGAGTGGCTGCCTAC
GATCCCAATGATCCTAAGATAGCCGAGTGCTGCCTGCCACCGGAGGGGAT
GTTCGAGGCCTTTTATCCCCGTGAGGTGGAGGGAATCCCCAATAGCGCAT
CGCGACCCGCACACGGACATGGCAGCTTCTTCAAGCACCGGAACCCAGCG
CTAGTGGACACCAAGAACGCGGCGGCCTATGGCTATAGGTTCGACGGCAA
GAGGCGTTTCAACTTCGATGCAAGCTTTCTAGACC

BO16874.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG30380-PA 306 CG30380-RA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG30380-RA 459 CG30380-RA 102..404 17..319 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7939256..7939558 319..17 1515 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:41:32 has no hits.

BO16874.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:29 Download gff for BO16874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30380-PA 1..306 17..320 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:30:33 Download gff for BO16874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 102..409 17..327 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:38:42 Download gff for BO16874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 102..409 17..327 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:38:42 Download gff for BO16874.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7939251..7939558 17..327 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:30:33 Download gff for BO16874.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3826756..3827063 17..327 98   Minus

BO16874.complete Sequence

337 bp assembled on 2006-10-11

GenBank Submission: FJ633959

> BO16874.complete
GAAGTTATCAGTCGACATGAGCGTAACTGCGCTATTGCTCAAGGCTTTGT
TTGTGCTCGGGCTGACCGTACTTTCGGGACCAGGAAGAGTGGCTGCCTAC
GATCCCAATGATCCTAAGATAGCCGAGTGCTGCCTGCCACCGGAGGGGAT
GTTCGAGGCCTTTTATCCCCGTGAGGTGGAGGGAATCCCCAATAGCGCAT
CGCGACCCGCACACGGACATGGCAGCTTCTTCAAGCACCGGAACCCAGCG
CTAGTGGACACCAAGAACGCGGCGGCCTATGGCTATAGGTTCGACGGCAA
GAGGCGTTTCAACTTCGATGCAAGCTTTCTAGACCAT

BO16874.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG30380-RA 306 CG30380-PA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG30380-RA 459 CG30380-RA 102..404 17..319 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7939256..7939558 319..17 1515 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:08:47 has no hits.

BO16874.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:10 Download gff for BO16874.complete
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 1..306 17..320 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:55 Download gff for BO16874.complete
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 82..389 17..327 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:42 Download gff for BO16874.complete
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 102..404 17..321 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:10 Download gff for BO16874.complete
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 82..389 17..327 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:01 Download gff for BO16874.complete
Subject Subject Range Query Range Percent Splice Strand
CG30380-RA 102..404 17..321 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:01 Download gff for BO16874.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7939254..7939558 17..321 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:42 Download gff for BO16874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3826759..3827063 17..321 99   Minus

BO16874.pep Sequence

Translation from 16 to 337

> BO16874.pep
MSVTALLLKALFVLGLTVLSGPGRVAAYDPNDPKIAECCLPPEGMFEAFY
PREVEGIPNSASRPAHGHGSFFKHRNPALVDTKNAAAYGYRFDGKRRFNF
DASFLDH

BO16874.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG30380-PA 101 CG30380-PA 1..101 1..101 541 100 Plus