Clone BO16875 Report

Search the DGRC for BO16875

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG14631-RA
Protein status:BO16875.pep: validated full length
Sequenced Size:430

Clone Sequence Records

BO16875.3prime Sequence

428 bp (428 high quality bases) assembled on 2006-10-13

> BO16875.3prime
ATGGTCTAGAAAGCTTGCCTGCTGAACTTGTTGATTGAGCTGCCGTTCCT
GCTCCAGCTCCATCTCGCGGCTTCTCTCCTGATGTTCCAGGGCCAATTCC
TGCTGCTTCTTGAGCAGCTTGTTGCGCAGCAAGGTCTCCAGGTGGACGCA
GAACTCCGACTTGGCGATGCCGGTGTCCAGGTACACCTCCTCCTTATTAT
TCATCCGGTCACCACGTCCACGCACCGCCTGTGTGCCGTGGGAGCAGCCG
TGCACGATCGAGGTTTCCGATGTCGAGAGACGCTTGCCGCGAATGAAGCT
GTATCCAGGCAGCCAGCGCCGGAGCAGACGGTCCACCCTGGCCAGGAGTC
CGAGCTTGGAGGCTTCTCCACTCCTCTCTTCACTGCCGGTGTACTCGTTA
GCCAAATCATCCATGTCGACTGATAACT

BO16875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-PA 399 CG14631-RA 1..396 414..19 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-RA 590 CG14631-RA 77..474 416..19 1990 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:03:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1012111..1012508 416..19 1990 100 Minus
Blast to na_te.dros performed 2015-02-02 18:03:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3289..3332 62..19 103 70.5 Minus

BO16875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:29 Download gff for BO16875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-PA 1..399 18..414 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:11 Download gff for BO16875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..474 19..425 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:20 Download gff for BO16875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..474 19..425 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:20 Download gff for BO16875.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1012101..1012508 19..425 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:11 Download gff for BO16875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 906134..906541 19..425 99   Minus

BO16875.5prime Sequence

428 bp (428 high quality bases) assembled on 2006-10-13

> BO16875.5prime
GAAGTTATCAGTCGACATGGATGATTTGGCTAACGAGTACACCGGCAGTG
AAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTCCTGGCCAGGGTGGAC
CGTCTGCTCCGGCGCTGGCTGCCTGGATACAGCTTCATTCGCGGCAAGCG
TCTCTCGACATCGGAAACCTCGATCGTGCACGGCTGCTCCCACGGCACAC
AGGCGGTGCGTGGACGTGGTGACCGGATGAATAATAAGGAGGAGGTGTAC
CTGGACACCGGCATCGCCAAGTCGGAGTTCTGCGTCCACCTGGAGACCTT
GCTGCGCAACAAGCTGCTCAAGAAGCAGCAGGAATTGGCCCTGGAACATC
AGGAGAGAAGCCGCGAGATGGAGCTGGAGCAGGAACGGCAGCTCAATCAA
CAAGTTCAGCAGGCAAGCTTTCTAGACC

BO16875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-PA 399 CG14631-RA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-RA 590 CG14631-RA 77..474 15..412 1990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1012111..1012508 15..412 1990 100 Plus
Blast to na_te.dros performed 2015-02-11 09:09:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3289..3332 369..412 103 70.5 Plus

BO16875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:30 Download gff for BO16875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-PA 1..399 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:54 Download gff for BO16875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..474 6..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:07 Download gff for BO16875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..474 6..412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:07 Download gff for BO16875.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1012101..1012508 6..412 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:54 Download gff for BO16875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 906134..906541 6..412 99   Plus

BO16875.complete Sequence

430 bp assembled on 2006-10-11

GenBank Submission: FJ633960

> BO16875.complete
GAAGTTATCAGTCGACATGGATGATTTGGCTAACGAGTACACCGGCAGTG
AAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTCCTGGCCAGGGTGGAC
CGTCTGCTCCGGCGCTGGCTGCCTGGATACAGCTTCATTCGCGGCAAGCG
TCTCTCGACATCGGAAACCTCGATCGTGCACGGCTGCTCCCACGGCACAC
AGGCGGTGCGTGGACGTGGTGACCGGATGAATAATAAGGAGGAGGTGTAC
CTGGACACCGGCATCGCCAAGTCGGAGTTCTGCGTCCACCTGGAGACCTT
GCTGCGCAACAAGCTGCTCAAGAAGCAGCAGGAATTGGCCCTGGAACATC
AGGAGAGAAGCCGCGAGATGGAGCTGGAGCAGGAACGGCAGCTCAATCAA
CAAGTTCAGCAGGCAAGCTTTCTAGACCAT

BO16875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-RA 399 CG14631-PA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-RA 590 CG14631-RA 77..474 15..412 1990 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1012111..1012508 15..412 1990 100 Plus
Blast to na_te.dros performed 2014-11-27 10:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3289..3332 369..412 103 70.5 Plus

BO16875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:20 Download gff for BO16875.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 1..399 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:45 Download gff for BO16875.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..474 6..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:22 Download gff for BO16875.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 79..474 17..414 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:20 Download gff for BO16875.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 67..474 6..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:18 Download gff for BO16875.complete
Subject Subject Range Query Range Percent Splice Strand
CG14631-RA 79..474 17..414 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:18 Download gff for BO16875.complete
Subject Subject Range Query Range Percent Splice Strand
X 1012113..1012508 17..414 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:22 Download gff for BO16875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 906146..906541 17..414 99   Plus

BO16875.pep Sequence

Translation from 16 to 430

> BO16875.pep
MDDLANEYTGSEERSGEASKLGLLARVDRLLRRWLPGYSFIRGKRLSTSE
TSIVHGCSHGTQAVRGRGDRMNNKEEVYLDTGIAKSEFCVHLETLLRNKL
LKKQQELALEHQERSREMELEQERQLNQQVQQASFLDH

BO16875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG14631-PA 132 CG14631-PA 1..132 1..132 673 100 Plus