Clone Sequence Records
BO16875.3prime Sequence
428 bp (428 high quality bases) assembled on 2006-10-13
> BO16875.3prime
ATGGTCTAGAAAGCTTGCCTGCTGAACTTGTTGATTGAGCTGCCGTTCCT
GCTCCAGCTCCATCTCGCGGCTTCTCTCCTGATGTTCCAGGGCCAATTCC
TGCTGCTTCTTGAGCAGCTTGTTGCGCAGCAAGGTCTCCAGGTGGACGCA
GAACTCCGACTTGGCGATGCCGGTGTCCAGGTACACCTCCTCCTTATTAT
TCATCCGGTCACCACGTCCACGCACCGCCTGTGTGCCGTGGGAGCAGCCG
TGCACGATCGAGGTTTCCGATGTCGAGAGACGCTTGCCGCGAATGAAGCT
GTATCCAGGCAGCCAGCGCCGGAGCAGACGGTCCACCCTGGCCAGGAGTC
CGAGCTTGGAGGCTTCTCCACTCCTCTCTTCACTGCCGGTGTACTCGTTA
GCCAAATCATCCATGTCGACTGATAACT
BO16875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-PA | 399 | CG14631-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:03:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-RA | 590 | CG14631-RA | 77..474 | 416..19 | 1990 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1012111..1012508 | 416..19 | 1990 | 100 | Minus |
Blast to na_te.dros performed 2015-02-02 18:03:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3289..3332 | 62..19 | 103 | 70.5 | Minus |
BO16875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:29 Download gff for
BO16875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-PA | 1..399 | 18..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:41:11 Download gff for
BO16875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..474 | 19..425 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:13:20 Download gff for
BO16875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..474 | 19..425 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 19:13:20 Download gff for
BO16875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1012101..1012508 | 19..425 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:41:11 Download gff for
BO16875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 906134..906541 | 19..425 | 99 | | Minus |
BO16875.5prime Sequence
428 bp (428 high quality bases) assembled on 2006-10-13
> BO16875.5prime
GAAGTTATCAGTCGACATGGATGATTTGGCTAACGAGTACACCGGCAGTG
AAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTCCTGGCCAGGGTGGAC
CGTCTGCTCCGGCGCTGGCTGCCTGGATACAGCTTCATTCGCGGCAAGCG
TCTCTCGACATCGGAAACCTCGATCGTGCACGGCTGCTCCCACGGCACAC
AGGCGGTGCGTGGACGTGGTGACCGGATGAATAATAAGGAGGAGGTGTAC
CTGGACACCGGCATCGCCAAGTCGGAGTTCTGCGTCCACCTGGAGACCTT
GCTGCGCAACAAGCTGCTCAAGAAGCAGCAGGAATTGGCCCTGGAACATC
AGGAGAGAAGCCGCGAGATGGAGCTGGAGCAGGAACGGCAGCTCAATCAA
CAAGTTCAGCAGGCAAGCTTTCTAGACC
BO16875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-PA | 399 | CG14631-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-RA | 590 | CG14631-RA | 77..474 | 15..412 | 1990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1012111..1012508 | 15..412 | 1990 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:09:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3289..3332 | 369..412 | 103 | 70.5 | Plus |
BO16875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:30 Download gff for
BO16875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-PA | 1..399 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:54 Download gff for
BO16875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..474 | 6..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:07 Download gff for
BO16875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..474 | 6..412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:07 Download gff for
BO16875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1012101..1012508 | 6..412 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:54 Download gff for
BO16875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 906134..906541 | 6..412 | 99 | | Plus |
BO16875.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ633960
> BO16875.complete
GAAGTTATCAGTCGACATGGATGATTTGGCTAACGAGTACACCGGCAGTG
AAGAGAGGAGTGGAGAAGCCTCCAAGCTCGGACTCCTGGCCAGGGTGGAC
CGTCTGCTCCGGCGCTGGCTGCCTGGATACAGCTTCATTCGCGGCAAGCG
TCTCTCGACATCGGAAACCTCGATCGTGCACGGCTGCTCCCACGGCACAC
AGGCGGTGCGTGGACGTGGTGACCGGATGAATAATAAGGAGGAGGTGTAC
CTGGACACCGGCATCGCCAAGTCGGAGTTCTGCGTCCACCTGGAGACCTT
GCTGCGCAACAAGCTGCTCAAGAAGCAGCAGGAATTGGCCCTGGAACATC
AGGAGAGAAGCCGCGAGATGGAGCTGGAGCAGGAACGGCAGCTCAATCAA
CAAGTTCAGCAGGCAAGCTTTCTAGACCAT
BO16875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-RA | 399 | CG14631-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-RA | 590 | CG14631-RA | 77..474 | 15..412 | 1990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:57:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1012111..1012508 | 15..412 | 1990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3289..3332 | 369..412 | 103 | 70.5 | Plus |
BO16875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:20 Download gff for
BO16875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 1..399 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:45 Download gff for
BO16875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..474 | 6..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:22 Download gff for
BO16875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 79..474 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:20 Download gff for
BO16875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 67..474 | 6..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:35:18 Download gff for
BO16875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14631-RA | 79..474 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:35:18 Download gff for
BO16875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1012113..1012508 | 17..414 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:22 Download gff for
BO16875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 906146..906541 | 17..414 | 99 | | Plus |
BO16875.pep Sequence
Translation from 16 to 430
> BO16875.pep
MDDLANEYTGSEERSGEASKLGLLARVDRLLRRWLPGYSFIRGKRLSTSE
TSIVHGCSHGTQAVRGRGDRMNNKEEVYLDTGIAKSEFCVHLETLLRNKL
LKKQQELALEHQERSREMELEQERQLNQQVQQASFLDH
BO16875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14631-PA | 132 | CG14631-PA | 1..132 | 1..132 | 673 | 100 | Plus |