Clone Sequence Records
BO16876.3prime Sequence
368 bp (368 high quality bases) assembled on 2006-10-13
> BO16876.3prime
ATGGTCTAGAAAGCTTGCCCGCACTTTTATAGACTGCACCTCCAGCCAAA
TCATCACAGCGGCTATAGCCACATATATAGCCACGATCATGAAGATCTGC
AGGGGACTGGCGGTGAAAACTTGGACCACCAGCATCACGGTTCCCAGAAT
AAACACCCCGGACAGGAAGCTGACCATCAGTATGGTGGACCAGTTGCGAA
ACCAGGCGTGCTTTTTATCCGGCGGCGGTACAAAAATCGGTTTCAGCGGG
CTGTACTCCTTCTTATACTGAGTCTCGTATCCGCTGGTAAAGTCAACCTC
ATCGTGGTACGTCCCCGGACCCGAGGTTCCAGCCTTAGTCTCATCCGTGT
CCATGTCGACTGATAACT
BO16876.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15152-PA | 339 | CG15152-RA | 1..336 | 354..19 | 1680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15152-RB | 563 | CG15152-RB | 26..361 | 354..19 | 1680 | 100 | Minus |
CG15152-RA | 674 | CG15152-RA | 137..472 | 354..19 | 1680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18114683..18115018 | 354..19 | 1680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:00:59 has no hits.
BO16876.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:31 Download gff for
BO16876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-PA | 1..339 | 16..354 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:19 Download gff for
BO16876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 134..476 | 15..357 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:29 Download gff for
BO16876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 134..476 | 15..357 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:29 Download gff for
BO16876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18114680..18115022 | 14..357 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:19 Download gff for
BO16876.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18114680..18115022 | 14..357 | 98 | -> | Minus |
BO16876.5prime Sequence
368 bp (368 high quality bases) assembled on 2006-10-13
> BO16876.5prime
GAAGTTATCAGTCGACATGGACACGGATGAGACTAAGGCTGGAACCTCGG
GTCCGGGGACGTACCACGATGAGGTTGACTTTACCAGCGGATACGAGACT
CAGTATAAGAAGGAGTACAGCCCGCTGAAACCGATTTTTGTACCGCCGCC
GGATAAAAAGCACGCCTGGTTTCGCAACTGGTCCACCATACTGATGGTCA
GCTTCCTGTCCGGGGTGTTTATTCTGGGAACCGTGATGCTGGTGGTCCAA
GTTTTCACCGCCAGTCCCCTGCAGATCTTCATGATCGTGGCTATATATGT
GGCTATAGCCGCTGTGATGATTTGGCTGGAGGTGCAGTCTATAAAAGTGC
GGGCAAGCTTTCTAGACC
BO16876.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15152-PA | 339 | CG15152-RA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15152-RB | 563 | CG15152-RB | 26..361 | 17..352 | 1680 | 100 | Plus |
CG15152-RA | 674 | CG15152-RA | 137..472 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18114683..18115018 | 17..352 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:55:05 has no hits.
BO16876.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:32 Download gff for
BO16876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-PA | 1..339 | 17..355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:05 Download gff for
BO16876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 134..476 | 14..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:21 Download gff for
BO16876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 134..476 | 14..356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:21 Download gff for
BO16876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18114680..18115022 | 14..357 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:05 Download gff for
BO16876.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18114680..18115022 | 14..357 | 98 | -> | Plus |
BO16876.complete Sequence
370 bp assembled on 2006-10-11
GenBank Submission: FJ633961
> BO16876.complete
GAAGTTATCAGTCGACATGGACACGGATGAGACTAAGGCTGGAACCTCGG
GTCCGGGGACGTACCACGATGAGGTTGACTTTACCAGCGGATACGAGACT
CAGTATAAGAAGGAGTACAGCCCGCTGAAACCGATTTTTGTACCGCCGCC
GGATAAAAAGCACGCCTGGTTTCGCAACTGGTCCACCATACTGATGGTCA
GCTTCCTGTCCGGGGTGTTTATTCTGGGAACCGTGATGCTGGTGGTCCAA
GTTTTCACCGCCAGTCCCCTGCAGATCTTCATGATCGTGGCTATATATGT
GGCTATAGCCGCTGTGATGATTTGGCTGGAGGTGCAGTCTATAAAAGTGC
GGGCAAGCTTTCTAGACCAT
BO16876.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15152-RB | 339 | CG15152-PB | 1..336 | 17..352 | 1680 | 100 | Plus |
CG15152-RA | 339 | CG15152-PA | 1..336 | 17..352 | 1680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15152-RB | 563 | CG15152-RB | 26..361 | 17..352 | 1680 | 100 | Plus |
CG15152-RA | 674 | CG15152-RA | 137..472 | 17..352 | 1680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18114683..18115018 | 17..352 | 1680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:55:51 has no hits.
BO16876.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:37 Download gff for
BO16876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 1..339 | 17..355 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:39 Download gff for
BO16876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 134..476 | 14..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:58 Download gff for
BO16876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 137..472 | 17..354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:37 Download gff for
BO16876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 134..476 | 14..356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:59 Download gff for
BO16876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15152-RA | 137..472 | 17..354 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:59 Download gff for
BO16876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18114683..18115018 | 17..354 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:58 Download gff for
BO16876.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18114683..18115018 | 17..354 | 99 | | Plus |
BO16876.pep Sequence
Translation from 16 to 370
> BO16876.pep
MDTDETKAGTSGPGTYHDEVDFTSGYETQYKKEYSPLKPIFVPPPDKKHA
WFRNWSTILMVSFLSGVFILGTVMLVVQVFTASPLQIFMIVAIYVAIAAV
MIWLEVQSIKVRASFLDH
BO16876.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15152-PB | 112 | CG15152-PB | 1..112 | 1..112 | 583 | 100 | Plus |
CG15152-PA | 112 | CG15152-PA | 1..112 | 1..112 | 583 | 100 | Plus |