Clone BO16876 Report

Search the DGRC for BO16876

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptCG15152-RA
Protein status:BO16876.pep: validated full length
Sequenced Size:370

Clone Sequence Records

BO16876.3prime Sequence

368 bp (368 high quality bases) assembled on 2006-10-13

> BO16876.3prime
ATGGTCTAGAAAGCTTGCCCGCACTTTTATAGACTGCACCTCCAGCCAAA
TCATCACAGCGGCTATAGCCACATATATAGCCACGATCATGAAGATCTGC
AGGGGACTGGCGGTGAAAACTTGGACCACCAGCATCACGGTTCCCAGAAT
AAACACCCCGGACAGGAAGCTGACCATCAGTATGGTGGACCAGTTGCGAA
ACCAGGCGTGCTTTTTATCCGGCGGCGGTACAAAAATCGGTTTCAGCGGG
CTGTACTCCTTCTTATACTGAGTCTCGTATCCGCTGGTAAAGTCAACCTC
ATCGTGGTACGTCCCCGGACCCGAGGTTCCAGCCTTAGTCTCATCCGTGT
CCATGTCGACTGATAACT

BO16876.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-PA 339 CG15152-RA 1..336 354..19 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-RB 563 CG15152-RB 26..361 354..19 1680 100 Minus
CG15152-RA 674 CG15152-RA 137..472 354..19 1680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18114683..18115018 354..19 1680 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:00:59 has no hits.

BO16876.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:31 Download gff for BO16876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-PA 1..339 16..354 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:19 Download gff for BO16876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..476 15..357 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:29 Download gff for BO16876.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..476 15..357 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:29 Download gff for BO16876.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18114680..18115022 14..357 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:19 Download gff for BO16876.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18114680..18115022 14..357 98 -> Minus

BO16876.5prime Sequence

368 bp (368 high quality bases) assembled on 2006-10-13

> BO16876.5prime
GAAGTTATCAGTCGACATGGACACGGATGAGACTAAGGCTGGAACCTCGG
GTCCGGGGACGTACCACGATGAGGTTGACTTTACCAGCGGATACGAGACT
CAGTATAAGAAGGAGTACAGCCCGCTGAAACCGATTTTTGTACCGCCGCC
GGATAAAAAGCACGCCTGGTTTCGCAACTGGTCCACCATACTGATGGTCA
GCTTCCTGTCCGGGGTGTTTATTCTGGGAACCGTGATGCTGGTGGTCCAA
GTTTTCACCGCCAGTCCCCTGCAGATCTTCATGATCGTGGCTATATATGT
GGCTATAGCCGCTGTGATGATTTGGCTGGAGGTGCAGTCTATAAAAGTGC
GGGCAAGCTTTCTAGACC

BO16876.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-PA 339 CG15152-RA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-RB 563 CG15152-RB 26..361 17..352 1680 100 Plus
CG15152-RA 674 CG15152-RA 137..472 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18114683..18115018 17..352 1680 100 Plus
Blast to na_te.dros performed on 2015-02-12 03:55:05 has no hits.

BO16876.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:32 Download gff for BO16876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-PA 1..339 17..355 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:05 Download gff for BO16876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..476 14..356 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:21 Download gff for BO16876.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..476 14..356 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:21 Download gff for BO16876.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18114680..18115022 14..357 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:05 Download gff for BO16876.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18114680..18115022 14..357 98 -> Plus

BO16876.complete Sequence

370 bp assembled on 2006-10-11

GenBank Submission: FJ633961

> BO16876.complete
GAAGTTATCAGTCGACATGGACACGGATGAGACTAAGGCTGGAACCTCGG
GTCCGGGGACGTACCACGATGAGGTTGACTTTACCAGCGGATACGAGACT
CAGTATAAGAAGGAGTACAGCCCGCTGAAACCGATTTTTGTACCGCCGCC
GGATAAAAAGCACGCCTGGTTTCGCAACTGGTCCACCATACTGATGGTCA
GCTTCCTGTCCGGGGTGTTTATTCTGGGAACCGTGATGCTGGTGGTCCAA
GTTTTCACCGCCAGTCCCCTGCAGATCTTCATGATCGTGGCTATATATGT
GGCTATAGCCGCTGTGATGATTTGGCTGGAGGTGCAGTCTATAAAAGTGC
GGGCAAGCTTTCTAGACCAT

BO16876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:55:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-RB 339 CG15152-PB 1..336 17..352 1680 100 Plus
CG15152-RA 339 CG15152-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-RB 563 CG15152-RB 26..361 17..352 1680 100 Plus
CG15152-RA 674 CG15152-RA 137..472 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18114683..18115018 17..352 1680 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:55:51 has no hits.

BO16876.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:37 Download gff for BO16876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 1..339 17..355 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:39 Download gff for BO16876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..476 14..356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:47:58 Download gff for BO16876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 137..472 17..354 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:37 Download gff for BO16876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 134..476 14..356 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:06:59 Download gff for BO16876.complete
Subject Subject Range Query Range Percent Splice Strand
CG15152-RA 137..472 17..354 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:06:59 Download gff for BO16876.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18114683..18115018 17..354 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:47:58 Download gff for BO16876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18114683..18115018 17..354 99   Plus

BO16876.pep Sequence

Translation from 16 to 370

> BO16876.pep
MDTDETKAGTSGPGTYHDEVDFTSGYETQYKKEYSPLKPIFVPPPDKKHA
WFRNWSTILMVSFLSGVFILGTVMLVVQVFTASPLQIFMIVAIYVAIAAV
MIWLEVQSIKVRASFLDH

BO16876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG15152-PB 112 CG15152-PB 1..112 1..112 583 100 Plus
CG15152-PA 112 CG15152-PA 1..112 1..112 583 100 Plus