Clone BO16877 Report

Search the DGRC for BO16877

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG15434-RA
Protein status:BO16877.pep: validated full length
Sequenced Size:319

Clone Sequence Records

BO16877.3prime Sequence

317 bp (317 high quality bases) assembled on 2006-10-13

> BO16877.3prime
ATGGTCTAGAAAGCTTGCTTTGCCAACCGCTTCCAGGTTTTTGTGTATGT
CAGGAGCAGCGTGGTTGGCCAGGGAGAGGGACACTTCCTTGCCGTTGCCA
TAGCGGGCGTAGAGGCGGGGCTGGACGCCAGAGCACTCGCGCACGAGGAT
CGGCAGGTCGGGATTGCTCTTCTTCAGGTTTGGATAGAACCTTTCCACGT
ATTCCCTGACTCCCTTGGAAGTGTCTCCTTTGGGATCCAGAATGATTCGC
AGCTCCTTCAGTTTTGGAGTAAAACTGGCCAATCGGAACAGAGTAATACC
CATGTCGACTGATAACT

BO16877.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-PA 288 CG15434-RA 1..285 303..19 1425 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-RA 460 CG15434-RA 104..388 303..19 1425 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4454885..4454995 208..98 555 100 Minus
2L 23513712 2L 4454729..4454827 303..205 495 100 Minus
2L 23513712 2L 4455055..4455135 99..19 405 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:10:10 has no hits.

BO16877.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:32 Download gff for BO16877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-PA 1..288 18..303 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:20 Download gff for BO16877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..396 11..303 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:53 Download gff for BO16877.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..396 11..303 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:53 Download gff for BO16877.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4454729..4454826 206..303 100 -> Minus
2L 4454888..4454994 99..205 100 -> Minus
2L 4455056..4455143 11..98 95   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:20 Download gff for BO16877.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4454729..4454826 206..303 100 -> Minus
arm_2L 4454888..4454994 99..205 100 -> Minus
arm_2L 4455056..4455143 11..98 95   Minus

BO16877.5prime Sequence

317 bp (317 high quality bases) assembled on 2006-10-13

> BO16877.5prime
GAAGTTATCAGTCGACATGGGTATTACTCTGTTCCGATTGGCCAGTTTTA
CTCCAAAACTGAAGGAGCTGCGAATCATTCTGGATCCCAAAGGAGACACT
TCCAAGGGAGTCAGGGAATACGTGGAAAGGTTCTATCCAAACCTGAAGAA
GAGCAATCCCGACCTGCCGATCCTCGTGCGCGAGTGCTCTGGCGTCCAGC
CCCGCCTCTACGCCCGCTATGGCAACGGCAAGGAAGTGTCCCTCTCCCTG
GCCAACCACGCTGCTCCTGACATACACAAAAACCTGGAAGCGGTTGGCAA
AGCAAGCTTTCTAGACC

BO16877.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-PA 288 CG15434-RA 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-RA 460 CG15434-RA 104..388 17..301 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4454885..4454995 112..222 555 100 Plus
2L 23513712 2L 4454729..4454827 17..115 495 100 Plus
2L 23513712 2L 4455055..4455135 221..301 405 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:33:25 has no hits.

BO16877.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:33 Download gff for BO16877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-PA 1..288 17..302 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:51 Download gff for BO16877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..396 17..309 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:22 Download gff for BO16877.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..396 17..309 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:22 Download gff for BO16877.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4454719..4454826 11..114 94 -> Plus
2L 4454888..4454994 115..221 100 -> Plus
2L 4455056..4455143 222..309 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:51 Download gff for BO16877.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4454719..4454826 11..114 94 -> Plus
arm_2L 4454888..4454994 115..221 100 -> Plus
arm_2L 4455056..4455143 222..309 95   Plus

BO16877.complete Sequence

319 bp assembled on 2006-10-11

GenBank Submission: FJ633962

> BO16877.complete
GAAGTTATCAGTCGACATGGGTATTACTCTGTTCCGATTGGCCAGTTTTA
CTCCAAAACTGAAGGAGCTGCGAATCATTCTGGATCCCAAAGGAGACACT
TCCAAGGGAGTCAGGGAATACGTGGAAAGGTTCTATCCAAACCTGAAGAA
GAGCAATCCCGACCTGCCGATCCTCGTGCGCGAGTGCTCTGGCGTCCAGC
CCCGCCTCTACGCCCGCTATGGCAACGGCAAGGAAGTGTCCCTCTCCCTG
GCCAACCACGCTGCTCCTGACATACACAAAAACCTGGAAGCGGTTGGCAA
AGCAAGCTTTCTAGACCAT

BO16877.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-RA 288 CG15434-PA 1..285 17..301 1425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-RA 460 CG15434-RA 104..388 17..301 1425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4454885..4454995 112..222 555 100 Plus
2L 23513712 2L 4454729..4454827 17..115 495 100 Plus
2L 23513712 2L 4455055..4455135 221..301 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:38:30 has no hits.

BO16877.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:06 Download gff for BO16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 1..288 17..302 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:49 Download gff for BO16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 65..357 17..309 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:14 Download gff for BO16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..388 17..303 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:06 Download gff for BO16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 65..357 17..309 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:11 Download gff for BO16877.complete
Subject Subject Range Query Range Percent Splice Strand
CG15434-RA 104..388 17..303 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:11 Download gff for BO16877.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4454729..4454826 17..114 100 -> Plus
2L 4454888..4454994 115..221 100 -> Plus
2L 4455056..4455135 222..303 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:14 Download gff for BO16877.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4454729..4454826 17..114 100 -> Plus
arm_2L 4454888..4454994 115..221 100 -> Plus
arm_2L 4455056..4455135 222..303 97   Plus

BO16877.pep Sequence

Translation from 16 to 319

> BO16877.pep
MGITLFRLASFTPKLKELRIILDPKGDTSKGVREYVERFYPNLKKSNPDL
PILVRECSGVQPRLYARYGNGKEVSLSLANHAAPDIHKNLEAVGKASFLD
H

BO16877.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15434-PA 95 CG15434-PA 1..95 1..95 491 100 Plus