Clone Sequence Records
BO16877.3prime Sequence
317 bp (317 high quality bases) assembled on 2006-10-13
> BO16877.3prime
ATGGTCTAGAAAGCTTGCTTTGCCAACCGCTTCCAGGTTTTTGTGTATGT
CAGGAGCAGCGTGGTTGGCCAGGGAGAGGGACACTTCCTTGCCGTTGCCA
TAGCGGGCGTAGAGGCGGGGCTGGACGCCAGAGCACTCGCGCACGAGGAT
CGGCAGGTCGGGATTGCTCTTCTTCAGGTTTGGATAGAACCTTTCCACGT
ATTCCCTGACTCCCTTGGAAGTGTCTCCTTTGGGATCCAGAATGATTCGC
AGCTCCTTCAGTTTTGGAGTAAAACTGGCCAATCGGAACAGAGTAATACC
CATGTCGACTGATAACT
BO16877.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-PA | 288 | CG15434-RA | 1..285 | 303..19 | 1425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:10:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-RA | 460 | CG15434-RA | 104..388 | 303..19 | 1425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4454885..4454995 | 208..98 | 555 | 100 | Minus |
2L | 23513712 | 2L | 4454729..4454827 | 303..205 | 495 | 100 | Minus |
2L | 23513712 | 2L | 4455055..4455135 | 99..19 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:10:10 has no hits.
BO16877.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:32 Download gff for
BO16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-PA | 1..288 | 18..303 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:20 Download gff for
BO16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..396 | 11..303 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:53 Download gff for
BO16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..396 | 11..303 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:53 Download gff for
BO16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4454729..4454826 | 206..303 | 100 | -> | Minus |
2L | 4454888..4454994 | 99..205 | 100 | -> | Minus |
2L | 4455056..4455143 | 11..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:20 Download gff for
BO16877.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4454729..4454826 | 206..303 | 100 | -> | Minus |
arm_2L | 4454888..4454994 | 99..205 | 100 | -> | Minus |
arm_2L | 4455056..4455143 | 11..98 | 95 | | Minus |
BO16877.5prime Sequence
317 bp (317 high quality bases) assembled on 2006-10-13
> BO16877.5prime
GAAGTTATCAGTCGACATGGGTATTACTCTGTTCCGATTGGCCAGTTTTA
CTCCAAAACTGAAGGAGCTGCGAATCATTCTGGATCCCAAAGGAGACACT
TCCAAGGGAGTCAGGGAATACGTGGAAAGGTTCTATCCAAACCTGAAGAA
GAGCAATCCCGACCTGCCGATCCTCGTGCGCGAGTGCTCTGGCGTCCAGC
CCCGCCTCTACGCCCGCTATGGCAACGGCAAGGAAGTGTCCCTCTCCCTG
GCCAACCACGCTGCTCCTGACATACACAAAAACCTGGAAGCGGTTGGCAA
AGCAAGCTTTCTAGACC
BO16877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-PA | 288 | CG15434-RA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-RA | 460 | CG15434-RA | 104..388 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4454885..4454995 | 112..222 | 555 | 100 | Plus |
2L | 23513712 | 2L | 4454729..4454827 | 17..115 | 495 | 100 | Plus |
2L | 23513712 | 2L | 4455055..4455135 | 221..301 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:33:25 has no hits.
BO16877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:33 Download gff for
BO16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-PA | 1..288 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:51 Download gff for
BO16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..396 | 17..309 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:22 Download gff for
BO16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..396 | 17..309 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:22 Download gff for
BO16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4454719..4454826 | 11..114 | 94 | -> | Plus |
2L | 4454888..4454994 | 115..221 | 100 | -> | Plus |
2L | 4455056..4455143 | 222..309 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:51 Download gff for
BO16877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4454719..4454826 | 11..114 | 94 | -> | Plus |
arm_2L | 4454888..4454994 | 115..221 | 100 | -> | Plus |
arm_2L | 4455056..4455143 | 222..309 | 95 | | Plus |
BO16877.complete Sequence
319 bp assembled on 2006-10-11
GenBank Submission: FJ633962
> BO16877.complete
GAAGTTATCAGTCGACATGGGTATTACTCTGTTCCGATTGGCCAGTTTTA
CTCCAAAACTGAAGGAGCTGCGAATCATTCTGGATCCCAAAGGAGACACT
TCCAAGGGAGTCAGGGAATACGTGGAAAGGTTCTATCCAAACCTGAAGAA
GAGCAATCCCGACCTGCCGATCCTCGTGCGCGAGTGCTCTGGCGTCCAGC
CCCGCCTCTACGCCCGCTATGGCAACGGCAAGGAAGTGTCCCTCTCCCTG
GCCAACCACGCTGCTCCTGACATACACAAAAACCTGGAAGCGGTTGGCAA
AGCAAGCTTTCTAGACCAT
BO16877.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-RA | 288 | CG15434-PA | 1..285 | 17..301 | 1425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-RA | 460 | CG15434-RA | 104..388 | 17..301 | 1425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4454885..4454995 | 112..222 | 555 | 100 | Plus |
2L | 23513712 | 2L | 4454729..4454827 | 17..115 | 495 | 100 | Plus |
2L | 23513712 | 2L | 4455055..4455135 | 221..301 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:38:30 has no hits.
BO16877.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:06 Download gff for
BO16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 1..288 | 17..302 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:49 Download gff for
BO16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 65..357 | 17..309 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:14 Download gff for
BO16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..388 | 17..303 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:06 Download gff for
BO16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 65..357 | 17..309 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:11 Download gff for
BO16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15434-RA | 104..388 | 17..303 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:11 Download gff for
BO16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4454729..4454826 | 17..114 | 100 | -> | Plus |
2L | 4454888..4454994 | 115..221 | 100 | -> | Plus |
2L | 4455056..4455135 | 222..303 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:14 Download gff for
BO16877.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4454729..4454826 | 17..114 | 100 | -> | Plus |
arm_2L | 4454888..4454994 | 115..221 | 100 | -> | Plus |
arm_2L | 4455056..4455135 | 222..303 | 97 | | Plus |
BO16877.pep Sequence
Translation from 16 to 319
> BO16877.pep
MGITLFRLASFTPKLKELRIILDPKGDTSKGVREYVERFYPNLKKSNPDL
PILVRECSGVQPRLYARYGNGKEVSLSLANHAAPDIHKNLEAVGKASFLD
H
BO16877.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15434-PA | 95 | CG15434-PA | 1..95 | 1..95 | 491 | 100 | Plus |