Clone Sequence Records
BO16879.3prime Sequence
350 bp (350 high quality bases) assembled on 2006-10-13
> BO16879.3prime
ATGGTCTAGAAAGCTTGCGGCATTTCGTGATCGTTTCTTCCTGGGACTCG
GAGTGGTCTCATACCCATTGTCCGACTCCAAGTCTTCTTCATCGCCCTCA
TCCGTGAACACAATACGCTCCTCGTAGAACGAGATGACCATTTGGGGGCA
CCGAACGTTGAGCACTTCGGCGGGCACCAGGCCGGCTTCGTCGCAACCCT
TCCACTGCATCAAAAAGGTCAGCTTACCGGACCAGTTGCAGGCTCCTAAG
ATCCGCAACGGTTCGAGTCCAAGATCAAATCCATTTCGTTGCTTCACCGG
AAGAGCAGTAGAGGACGTCAAAGTGGAGCTGGGCATGTCGACTGATAACT
BO16879.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15636-PA | 321 | CG15636-RA | 1..318 | 336..19 | 1590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:09:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-RA | 500 | CG15636-RA | 116..433 | 336..19 | 1590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:09:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4577786..4578103 | 19..336 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:09:41 has no hits.
BO16879.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:35 Download gff for
BO16879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15636-PA | 1..321 | 18..336 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:01:58 Download gff for
BO16879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 99..416 | 19..336 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:15:28 Download gff for
BO16879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 116..433 | 19..336 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:15:28 Download gff for
BO16879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4577786..4578103 | 19..336 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:01:58 Download gff for
BO16879.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4577786..4578103 | 19..336 | 100 | | Plus |
BO16879.5prime Sequence
350 bp (350 high quality bases) assembled on 2006-10-13
> BO16879.5prime
GAAGTTATCAGTCGACATGCCCAGCTCCACTTTGACGTCCTCTACTGCTC
TTCCGGTGAAGCAACGAAATGGATTTGATCTTGGACTCGAACCGTTGCGG
ATCTTAGGAGCCTGCAACTGGTCCGGTAAGCTGACCTTTTTGATGCAGTG
GAAGGGTTGCGACGAAGCCGGCCTGGTGCCCGCCGAAGTGCTCAACGTTC
GGTGCCCCCAAATGGTCATCTCGTTCTACGAGGAGCGTATTGTGTTCACG
GATGAGGGCGATGAAGAAGACTTGGAGTCGGACAATGGGTATGAGACCAC
TCCGAGTCCCAGGAAGAAACGATCACGAAATGCCGCAAGCTTTCTAGACC
BO16879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15636-PA | 321 | CG15636-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:49:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-RA | 500 | CG15636-RA | 116..433 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:49:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4577786..4578103 | 334..17 | 1590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:49:09 has no hits.
BO16879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:35 Download gff for
BO16879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15636-PA | 1..321 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:17 Download gff for
BO16879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 99..416 | 17..334 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:03 Download gff for
BO16879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 116..433 | 17..334 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:03 Download gff for
BO16879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4577786..4578103 | 17..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:17 Download gff for
BO16879.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4577786..4578103 | 17..334 | 100 | | Minus |
BO16879.complete Sequence
352 bp assembled on 2006-10-11
GenBank Submission: FJ633963
> BO16879.complete
GAAGTTATCAGTCGACATGCCCAGCTCCACTTTGACGTCCTCTACTGCTC
TTCCGGTGAAGCAACGAAATGGATTTGATCTTGGACTCGAACCGTTGCGG
ATCTTAGGAGCCTGCAACTGGTCCGGTAAGCTGACCTTTTTGATGCAGTG
GAAGGGTTGCGACGAAGCCGGCCTGGTGCCCGCCGAAGTGCTCAACGTTC
GGTGCCCCCAAATGGTCATCTCGTTCTACGAGGAGCGTATTGTGTTCACG
GATGAGGGCGATGAAGAAGACTTGGAGTCGGACAATGGGTATGAGACCAC
TCCGAGTCCCAGGAAGAAACGATCACGAAATGCCGCAAGCTTTCTAGACC
AT
BO16879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-RA | 321 | CG15636-PA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-RA | 500 | CG15636-RA | 116..433 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4577786..4578103 | 334..17 | 1590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:50:29 has no hits.
BO16879.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:26 Download gff for
BO16879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Umbrea-RA | 1..321 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:21 Download gff for
BO16879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Umbrea-RA | 1..321 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:55:11 Download gff for
BO16879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 99..416 | 17..336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:26 Download gff for
BO16879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Umbrea-RA | 1..321 | 17..335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:27:44 Download gff for
BO16879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
HP6-RA | 116..433 | 17..336 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:27:44 Download gff for
BO16879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4577784..4578103 | 17..336 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:55:11 Download gff for
BO16879.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4577784..4578103 | 17..336 | 99 | | Minus |
BO16879.pep Sequence
Translation from 16 to 352
> BO16879.pep
MPSSTLTSSTALPVKQRNGFDLGLEPLRILGACNWSGKLTFLMQWKGCDE
AGLVPAEVLNVRCPQMVISFYEERIVFTDEGDEEDLESDNGYETTPSPRK
KRSRNAASFLDH
BO16879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
HP6-PA | 106 | CG15636-PA | 1..106 | 1..106 | 561 | 100 | Plus |
HP1b-PB | 240 | CG7041-PB | 90..152 | 15..77 | 192 | 58.7 | Plus |
HP1b-PC | 240 | CG7041-PC | 90..152 | 15..77 | 192 | 58.7 | Plus |
HP1b-PA | 240 | CG7041-PA | 90..152 | 15..77 | 192 | 58.7 | Plus |
Su(var)205-PB | 206 | CG8409-PB | 127..206 | 4..83 | 184 | 45 | Plus |