Clone Sequence Records
BO16880.3prime Sequence
386 bp (386 high quality bases) assembled on 2006-10-13
> BO16880.3prime
ATGGTCTAGAAAGCTTGCCTTGACTTTTTGCTGCAGAAGTCGCTGCTCGT
TGAGGCGCTGATTGATGCGTCGCGTGTTGGCCATCGAGTGGATGATGGTC
CACAGGGCCAGAGACCAACCTAGCAGGATGGTGCCGCACAGAACTGGACC
GTAGGCGCTAGCATGGCCTACCGGAATCTCGGCACGCAGCGGCATCTTTA
GCTGGCAGTCCACGTGCACCCGCCTCCAGTTGCAGCGCTCCAGATTAGCC
ATGGTCGTGGGTTGGCCATCCTTGATATGGTTCTCGTCGAAACGGCTTTC
CGGCGCATTCAGGCAGTACAGCTTATCGGGCCGGGCAACCAACTCGTTTT
CGATGAGCGCACTATCAGCCATGTCGACTGATAACT
BO16880.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-PA | 357 | CG30381-RA | 1..354 | 372..19 | 1770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:44:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-RC | 1195 | CG30381-RC | 516..869 | 372..19 | 1770 | 100 | Minus |
CG30381-RB | 1177 | CG30381-RB | 498..851 | 372..19 | 1770 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7929984..7930337 | 19..372 | 1770 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:43:57 has no hits.
BO16880.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:37 Download gff for
BO16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-PA | 1..357 | 15..372 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:28 Download gff for
BO16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 496..854 | 15..376 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:35 Download gff for
BO16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 496..854 | 15..376 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:35 Download gff for
BO16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7929981..7930339 | 15..376 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:28 Download gff for
BO16880.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3817486..3817844 | 15..376 | 98 | | Plus |
BO16880.5prime Sequence
386 bp (386 high quality bases) assembled on 2006-10-13
> BO16880.5prime
GAAGTTATCAGTCGACATGGCTGATAGTGCGCTCATCGAAAACGAGTTGG
TTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAGCCGTTTC
GACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGA
GCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAGATGCCGC
TGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCCAGTTCTG
TGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCATCATCCA
CTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAGCAGCGAC
TTCTGCAGCAAAAAGTCAAGGCAAGCTTTCTAGACC
BO16880.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-PA | 357 | CG30381-RA | 1..354 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-RC | 1195 | CG30381-RC | 516..869 | 17..370 | 1770 | 100 | Plus |
CG30381-RB | 1177 | CG30381-RB | 498..851 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7929984..7930337 | 370..17 | 1770 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:33:56 has no hits.
BO16880.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:37 Download gff for
BO16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-PA | 1..357 | 17..374 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:57 Download gff for
BO16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 496..854 | 13..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:35 Download gff for
BO16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 496..854 | 13..374 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:35 Download gff for
BO16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7929981..7930339 | 13..374 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:57 Download gff for
BO16880.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3817486..3817844 | 13..374 | 98 | | Minus |
BO16880.complete Sequence
388 bp assembled on 2006-10-11
GenBank Submission: FJ633964
> BO16880.complete
GAAGTTATCAGTCGACATGGCTGATAGTGCGCTCATCGAAAACGAGTTGG
TTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAGCCGTTTC
GACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGA
GCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAGATGCCGC
TGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCCAGTTCTG
TGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCATCATCCA
CTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAGCAGCGAC
TTCTGCAGCAAAAAGTCAAGGCAAGCTTTCTAGACCAT
BO16880.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-RC | 732 | CG30381-PC | 376..729 | 17..370 | 1770 | 100 | Plus |
CG30381-RB | 714 | CG30381-PB | 358..711 | 17..370 | 1770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-RC | 1195 | CG30381-RC | 516..869 | 17..370 | 1770 | 100 | Plus |
CG30381-RB | 1177 | CG30381-RB | 498..851 | 17..370 | 1770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 7929984..7930337 | 370..17 | 1770 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 02:01:20 has no hits.
BO16880.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:42 Download gff for
BO16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 356..714 | 13..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:44 Download gff for
BO16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 356..714 | 13..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:32 Download gff for
BO16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 498..851 | 17..372 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:43 Download gff for
BO16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 356..714 | 13..374 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:07 Download gff for
BO16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30381-RB | 498..851 | 17..372 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:07 Download gff for
BO16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 7929982..7930337 | 17..372 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:32 Download gff for
BO16880.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3817487..3817842 | 17..372 | 99 | | Minus |
BO16880.pep Sequence
Translation from 16 to 388
> BO16880.pep
MADSALIENELVARPDKLYCLNAPESRFDENHIKDGQPTTMANLERCNWR
RVHVDCQLKMPLRAEIPVGHASAYGPVLCGTILLGWSLALWTIIHSMANT
RRINQRLNEQRLLQQKVKASFLDH
BO16880.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30381-PB | 237 | CG30381-PB | 120..237 | 1..118 | 628 | 100 | Plus |
CG30381-PC | 243 | CG30381-PC | 126..243 | 1..118 | 628 | 100 | Plus |