Clone BO16880 Report

Search the DGRC for BO16880

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:80
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO16880.pep: validated full length
Sequenced Size:388

Clone Sequence Records

BO16880.3prime Sequence

386 bp (386 high quality bases) assembled on 2006-10-13

> BO16880.3prime
ATGGTCTAGAAAGCTTGCCTTGACTTTTTGCTGCAGAAGTCGCTGCTCGT
TGAGGCGCTGATTGATGCGTCGCGTGTTGGCCATCGAGTGGATGATGGTC
CACAGGGCCAGAGACCAACCTAGCAGGATGGTGCCGCACAGAACTGGACC
GTAGGCGCTAGCATGGCCTACCGGAATCTCGGCACGCAGCGGCATCTTTA
GCTGGCAGTCCACGTGCACCCGCCTCCAGTTGCAGCGCTCCAGATTAGCC
ATGGTCGTGGGTTGGCCATCCTTGATATGGTTCTCGTCGAAACGGCTTTC
CGGCGCATTCAGGCAGTACAGCTTATCGGGCCGGGCAACCAACTCGTTTT
CGATGAGCGCACTATCAGCCATGTCGACTGATAACT

BO16880.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-PA 357 CG30381-RA 1..354 372..19 1770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-RC 1195 CG30381-RC 516..869 372..19 1770 100 Minus
CG30381-RB 1177 CG30381-RB 498..851 372..19 1770 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7929984..7930337 19..372 1770 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:43:57 has no hits.

BO16880.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:37 Download gff for BO16880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-PA 1..357 15..372 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:28 Download gff for BO16880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 496..854 15..376 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:35 Download gff for BO16880.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 496..854 15..376 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:35 Download gff for BO16880.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 7929981..7930339 15..376 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:28 Download gff for BO16880.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3817486..3817844 15..376 98   Plus

BO16880.5prime Sequence

386 bp (386 high quality bases) assembled on 2006-10-13

> BO16880.5prime
GAAGTTATCAGTCGACATGGCTGATAGTGCGCTCATCGAAAACGAGTTGG
TTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAGCCGTTTC
GACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGA
GCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAGATGCCGC
TGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCCAGTTCTG
TGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCATCATCCA
CTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAGCAGCGAC
TTCTGCAGCAAAAAGTCAAGGCAAGCTTTCTAGACC

BO16880.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-PA 357 CG30381-RA 1..354 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:33:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-RC 1195 CG30381-RC 516..869 17..370 1770 100 Plus
CG30381-RB 1177 CG30381-RB 498..851 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7929984..7930337 370..17 1770 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:33:56 has no hits.

BO16880.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:37 Download gff for BO16880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-PA 1..357 17..374 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:57 Download gff for BO16880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 496..854 13..374 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:35 Download gff for BO16880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 496..854 13..374 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:35 Download gff for BO16880.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 7929981..7930339 13..374 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:57 Download gff for BO16880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3817486..3817844 13..374 98   Minus

BO16880.complete Sequence

388 bp assembled on 2006-10-11

GenBank Submission: FJ633964

> BO16880.complete
GAAGTTATCAGTCGACATGGCTGATAGTGCGCTCATCGAAAACGAGTTGG
TTGCCCGGCCCGATAAGCTGTACTGCCTGAATGCGCCGGAAAGCCGTTTC
GACGAGAACCATATCAAGGATGGCCAACCCACGACCATGGCTAATCTGGA
GCGCTGCAACTGGAGGCGGGTGCACGTGGACTGCCAGCTAAAGATGCCGC
TGCGTGCCGAGATTCCGGTAGGCCATGCTAGCGCCTACGGTCCAGTTCTG
TGCGGCACCATCCTGCTAGGTTGGTCTCTGGCCCTGTGGACCATCATCCA
CTCGATGGCCAACACGCGACGCATCAATCAGCGCCTCAACGAGCAGCGAC
TTCTGCAGCAAAAAGTCAAGGCAAGCTTTCTAGACCAT

BO16880.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-RC 732 CG30381-PC 376..729 17..370 1770 100 Plus
CG30381-RB 714 CG30381-PB 358..711 17..370 1770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:01:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-RC 1195 CG30381-RC 516..869 17..370 1770 100 Plus
CG30381-RB 1177 CG30381-RB 498..851 17..370 1770 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:01:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7929984..7930337 370..17 1770 100 Minus
Blast to na_te.dros performed on 2014-11-27 02:01:20 has no hits.

BO16880.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:42 Download gff for BO16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 356..714 13..374 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:44 Download gff for BO16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 356..714 13..374 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:32 Download gff for BO16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 498..851 17..372 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:43 Download gff for BO16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 356..714 13..374 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:36:07 Download gff for BO16880.complete
Subject Subject Range Query Range Percent Splice Strand
CG30381-RB 498..851 17..372 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:36:07 Download gff for BO16880.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7929982..7930337 17..372 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:32 Download gff for BO16880.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3817487..3817842 17..372 99   Minus

BO16880.pep Sequence

Translation from 16 to 388

> BO16880.pep
MADSALIENELVARPDKLYCLNAPESRFDENHIKDGQPTTMANLERCNWR
RVHVDCQLKMPLRAEIPVGHASAYGPVLCGTILLGWSLALWTIIHSMANT
RRINQRLNEQRLLQQKVKASFLDH

BO16880.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG30381-PB 237 CG30381-PB 120..237 1..118 628 100 Plus
CG30381-PC 243 CG30381-PC 126..243 1..118 628 100 Plus