Clone Sequence Records
BO16881.3prime Sequence
377 bp (377 high quality bases) assembled on 2006-10-13
> BO16881.3prime
ATGGTCTAGAAAGCTTGCCTTGCCGTGGCCTCCCAGGCACGGCGGACTCT
TCTCCGGCTCCTGCTCCGGTTCCCACTGCTTGGGTGTCTTGGCCTCAATG
GACAGGGCGTGCATAAACTCGAAGCCTGCTTCCTTCAGCGCATTTTTTAC
CGTGTCATTAACCAATCGATGACGCTTGATGAGCGTCAGATCGTTGAACT
TCTCCGAGACGACGAACACACGGAAGTGGGACTCCGACCGCTTGGGGACA
TTGTGCTGGGGCGATTCGTTAATGACCTCCAGATATACCGGCTTCAGCTC
CGTGTTTAGTGCTTTTCGCATGGCAGACTCGATGGGCGGATACTGTCCCG
CCTCCTGCGACATGTCGACTGATAACT
BO16881.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31126-PA | 348 | CG31126-RA | 1..345 | 363..19 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31126-RA | 589 | CG31126-RA | 146..490 | 363..19 | 1725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24659766..24659954 | 363..175 | 945 | 100 | Minus |
3R | 32079331 | 3R | 24660009..24660166 | 176..19 | 790 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:23:53 has no hits.
BO16881.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:38 Download gff for
BO16881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-PA | 1..348 | 15..363 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:14 Download gff for
BO16881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 139..493 | 15..370 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:06 Download gff for
BO16881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 139..493 | 15..370 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:06 Download gff for
BO16881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24659759..24659954 | 175..370 | 98 | -> | Minus |
3R | 24660011..24660169 | 15..174 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:14 Download gff for
BO16881.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20485481..20485676 | 175..370 | 98 | -> | Minus |
arm_3R | 20485733..20485891 | 15..174 | 98 | | Minus |
BO16881.5prime Sequence
377 bp (377 high quality bases) assembled on 2006-10-13
> BO16881.5prime
GAAGTTATCAGTCGACATGTCGCAGGAGGCGGGACAGTATCCGCCCATCG
AGTCTGCCATGCGAAAAGCACTAAACACGGAGCTGAAGCCGGTATATCTG
GAGGTCATTAACGAATCGCCCCAGCACAATGTCCCCAAGCGGTCGGAGTC
CCACTTCCGTGTGTTCGTCGTCTCGGAGAAGTTCAACGATCTGACGCTCA
TCAAGCGTCATCGATTGGTTAATGACACGGTAAAAAATGCGCTGAAGGAA
GCAGGCTTCGAGTTTATGCACGCCCTGTCCATTGAGGCCAAGACACCCAA
GCAGTGGGAACCGGAGCAGGAGCCGGAGAAGAGTCCGCCGTGCCTGGGAG
GCCACGGCAAGGCAAGCTTTCTAGACC
BO16881.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31126-PA | 348 | CG31126-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:44:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31126-RA | 589 | CG31126-RA | 146..490 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24659766..24659954 | 17..205 | 945 | 100 | Plus |
3R | 32079331 | 3R | 24660009..24660166 | 204..361 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:44:45 has no hits.
BO16881.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:39 Download gff for
BO16881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-PA | 1..348 | 17..365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:30 Download gff for
BO16881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 139..493 | 10..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:39 Download gff for
BO16881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 139..493 | 10..365 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:39 Download gff for
BO16881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24659759..24659954 | 10..205 | 98 | -> | Plus |
3R | 24660011..24660169 | 206..365 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:30 Download gff for
BO16881.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20485481..20485676 | 10..205 | 98 | -> | Plus |
arm_3R | 20485733..20485891 | 206..365 | 98 | | Plus |
BO16881.complete Sequence
379 bp assembled on 2006-10-11
GenBank Submission: FJ633965
> BO16881.complete
GAAGTTATCAGTCGACATGTCGCAGGAGGCGGGACAGTATCCGCCCATCG
AGTCTGCCATGCGAAAAGCACTAAACACGGAGCTGAAGCCGGTATATCTG
GAGGTCATTAACGAATCGCCCCAGCACAATGTCCCCAAGCGGTCGGAGTC
CCACTTCCGTGTGTTCGTCGTCTCGGAGAAGTTCAACGATCTGACGCTCA
TCAAGCGTCATCGATTGGTTAATGACACGGTAAAAAATGCGCTGAAGGAA
GCAGGCTTCGAGTTTATGCACGCCCTGTCCATTGAGGCCAAGACACCCAA
GCAGTGGGAACCGGAGCAGGAGCCGGAGAAGAGTCCGCCGTGCCTGGGAG
GCCACGGCAAGGCAAGCTTTCTAGACCAT
BO16881.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31126-RA | 453 | CG31126-PA | 106..450 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31126-RA | 589 | CG31126-RA | 146..490 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24659766..24659954 | 17..205 | 945 | 100 | Plus |
3R | 32079331 | 3R | 24660009..24660166 | 204..361 | 790 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:10:55 has no hits.
BO16881.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:30 Download gff for
BO16881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 99..453 | 10..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:27 Download gff for
BO16881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 129..483 | 10..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:12 Download gff for
BO16881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 146..490 | 17..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:30 Download gff for
BO16881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 129..483 | 10..365 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:45 Download gff for
BO16881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31126-RA | 146..490 | 17..363 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:45 Download gff for
BO16881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24659766..24659954 | 17..205 | 100 | -> | Plus |
3R | 24660011..24660166 | 206..363 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:12 Download gff for
BO16881.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20485488..20485676 | 17..205 | 100 | -> | Plus |
arm_3R | 20485733..20485888 | 206..363 | 98 | | Plus |
BO16881.pep Sequence
Translation from 16 to 379
> BO16881.pep
MSQEAGQYPPIESAMRKALNTELKPVYLEVINESPQHNVPKRSESHFRVF
VVSEKFNDLTLIKRHRLVNDTVKNALKEAGFEFMHALSIEAKTPKQWEPE
QEPEKSPPCLGGHGKASFLDH
BO16881.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31126-PA | 150 | CG31126-PA | 36..150 | 1..115 | 606 | 100 | Plus |