Clone BO16881 Report

Search the DGRC for BO16881

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:81
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO16881.pep: validated full length
Sequenced Size:379

Clone Sequence Records

BO16881.3prime Sequence

377 bp (377 high quality bases) assembled on 2006-10-13

> BO16881.3prime
ATGGTCTAGAAAGCTTGCCTTGCCGTGGCCTCCCAGGCACGGCGGACTCT
TCTCCGGCTCCTGCTCCGGTTCCCACTGCTTGGGTGTCTTGGCCTCAATG
GACAGGGCGTGCATAAACTCGAAGCCTGCTTCCTTCAGCGCATTTTTTAC
CGTGTCATTAACCAATCGATGACGCTTGATGAGCGTCAGATCGTTGAACT
TCTCCGAGACGACGAACACACGGAAGTGGGACTCCGACCGCTTGGGGACA
TTGTGCTGGGGCGATTCGTTAATGACCTCCAGATATACCGGCTTCAGCTC
CGTGTTTAGTGCTTTTCGCATGGCAGACTCGATGGGCGGATACTGTCCCG
CCTCCTGCGACATGTCGACTGATAACT

BO16881.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG31126-PA 348 CG31126-RA 1..345 363..19 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31126-RA 589 CG31126-RA 146..490 363..19 1725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24659766..24659954 363..175 945 100 Minus
3R 32079331 3R 24660009..24660166 176..19 790 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:23:53 has no hits.

BO16881.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:38 Download gff for BO16881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31126-PA 1..348 15..363 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:14 Download gff for BO16881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 139..493 15..370 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:06 Download gff for BO16881.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 139..493 15..370 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:06 Download gff for BO16881.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24659759..24659954 175..370 98 -> Minus
3R 24660011..24660169 15..174 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:14 Download gff for BO16881.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20485481..20485676 175..370 98 -> Minus
arm_3R 20485733..20485891 15..174 98   Minus

BO16881.5prime Sequence

377 bp (377 high quality bases) assembled on 2006-10-13

> BO16881.5prime
GAAGTTATCAGTCGACATGTCGCAGGAGGCGGGACAGTATCCGCCCATCG
AGTCTGCCATGCGAAAAGCACTAAACACGGAGCTGAAGCCGGTATATCTG
GAGGTCATTAACGAATCGCCCCAGCACAATGTCCCCAAGCGGTCGGAGTC
CCACTTCCGTGTGTTCGTCGTCTCGGAGAAGTTCAACGATCTGACGCTCA
TCAAGCGTCATCGATTGGTTAATGACACGGTAAAAAATGCGCTGAAGGAA
GCAGGCTTCGAGTTTATGCACGCCCTGTCCATTGAGGCCAAGACACCCAA
GCAGTGGGAACCGGAGCAGGAGCCGGAGAAGAGTCCGCCGTGCCTGGGAG
GCCACGGCAAGGCAAGCTTTCTAGACC

BO16881.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG31126-PA 348 CG31126-RA 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:44:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG31126-RA 589 CG31126-RA 146..490 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24659766..24659954 17..205 945 100 Plus
3R 32079331 3R 24660009..24660166 204..361 790 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:44:45 has no hits.

BO16881.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:39 Download gff for BO16881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31126-PA 1..348 17..365 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:30 Download gff for BO16881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 139..493 10..365 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:39 Download gff for BO16881.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 139..493 10..365 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:39 Download gff for BO16881.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24659759..24659954 10..205 98 -> Plus
3R 24660011..24660169 206..365 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:30 Download gff for BO16881.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20485481..20485676 10..205 98 -> Plus
arm_3R 20485733..20485891 206..365 98   Plus

BO16881.complete Sequence

379 bp assembled on 2006-10-11

GenBank Submission: FJ633965

> BO16881.complete
GAAGTTATCAGTCGACATGTCGCAGGAGGCGGGACAGTATCCGCCCATCG
AGTCTGCCATGCGAAAAGCACTAAACACGGAGCTGAAGCCGGTATATCTG
GAGGTCATTAACGAATCGCCCCAGCACAATGTCCCCAAGCGGTCGGAGTC
CCACTTCCGTGTGTTCGTCGTCTCGGAGAAGTTCAACGATCTGACGCTCA
TCAAGCGTCATCGATTGGTTAATGACACGGTAAAAAATGCGCTGAAGGAA
GCAGGCTTCGAGTTTATGCACGCCCTGTCCATTGAGGCCAAGACACCCAA
GCAGTGGGAACCGGAGCAGGAGCCGGAGAAGAGTCCGCCGTGCCTGGGAG
GCCACGGCAAGGCAAGCTTTCTAGACCAT

BO16881.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31126-RA 453 CG31126-PA 106..450 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31126-RA 589 CG31126-RA 146..490 17..361 1725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24659766..24659954 17..205 945 100 Plus
3R 32079331 3R 24660009..24660166 204..361 790 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:10:55 has no hits.

BO16881.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:30 Download gff for BO16881.complete
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 99..453 10..365 98   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:27 Download gff for BO16881.complete
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 129..483 10..365 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:12 Download gff for BO16881.complete
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 146..490 17..363 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:30 Download gff for BO16881.complete
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 129..483 10..365 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:45 Download gff for BO16881.complete
Subject Subject Range Query Range Percent Splice Strand
CG31126-RA 146..490 17..363 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:45 Download gff for BO16881.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24659766..24659954 17..205 100 -> Plus
3R 24660011..24660166 206..363 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:12 Download gff for BO16881.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20485488..20485676 17..205 100 -> Plus
arm_3R 20485733..20485888 206..363 98   Plus

BO16881.pep Sequence

Translation from 16 to 379

> BO16881.pep
MSQEAGQYPPIESAMRKALNTELKPVYLEVINESPQHNVPKRSESHFRVF
VVSEKFNDLTLIKRHRLVNDTVKNALKEAGFEFMHALSIEAKTPKQWEPE
QEPEKSPPCLGGHGKASFLDH

BO16881.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG31126-PA 150 CG31126-PA 36..150 1..115 606 100 Plus