Clone Sequence Records
BO16883.3prime Sequence
392 bp (392 high quality bases) assembled on 2006-10-13
> BO16883.3prime
ATGGTCTAGAAAGCTTGCATACAATGACTCTGGTTCCAGGATCTCGTAGG
TTGAAAGCGGCAGGACGTCATTGCCAAAGTAGTTGGCTCCACCTGGTGCA
ATCTCCGGCACTGGATCGTTGTAAAGACGTTCGAGGAAGGGACTTCTGGA
CATCATCATCCTAGAGCTGATGACCGGGCGCCTCTTCACGAAATAATCCC
TCCTGTGTGGCCTCCTCATGGGCGATATCTGGTCCATGATTTCGTTGCTC
ATTCTTCTCTCCGCCGGCAGCGATGTGACCTCATTGAGTATTGAAGATCT
CGACCTGGGTCGTGCCCATGCGATAAGGACCAAACAGGCAATGACCAGAA
TAAGAAGGGCAAGTTTAGAGCTCGACATGTCGACTGATAACT
BO16883.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14915-PA | 363 | CG14915-RA | 1..360 | 378..19 | 1800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14915-RA | 506 | CG14915-RA | 27..394 | 386..19 | 1810 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11071053..11071420 | 386..19 | 1810 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:01:23 has no hits.
BO16883.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:41 Download gff for
BO16883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-PA | 1..363 | 18..378 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:24:24 Download gff for
BO16883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-RA | 27..394 | 19..386 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:14 Download gff for
BO16883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-RA | 27..394 | 19..386 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:14 Download gff for
BO16883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11071053..11071416 | 23..386 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:24:24 Download gff for
BO16883.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11071053..11071416 | 23..386 | 99 | -> | Minus |
BO16883.5prime Sequence
392 bp (392 high quality bases) assembled on 2006-10-13
> BO16883.5prime
GAAGTTATCAGTCGACATGTCGAGCTCTAAACTTGCCCTTCTTATTCTGG
TCATTGCCTGTTTGGTCCTTATCGCATGGGCACGACCCAGGTCGAGATCT
TCAATACTCAATGAGGTCACATCGCTGCCGGCGGAGAGAAGAATGAGCAA
CGAAATCATGGACCAGATATCGCCCATGAGGAGGCCACACAGGAGGGATT
ATTTCGTGAAGAGGCGCCCGGTCATCAGCTCTAGGATGATGATGTCCAGA
AGTCCCTTCCTCGAACGTCTTTACAACGATCCAGTGCCGGAGATTGCACC
AGGTGGAGCCAACTACTTTGGCAATGACGTCCTGCCGCTTTCAACCTACG
AGATCCTGGAACCAGAGTCATTGTATGCAAGCTTTCTAGACC
BO16883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14915-PA | 363 | CG14915-RA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14915-RA | 506 | CG14915-RA | 27..394 | 9..376 | 1810 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:58:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11071053..11071420 | 9..376 | 1810 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:58:10 has no hits.
BO16883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:42 Download gff for
BO16883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-PA | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:32 Download gff for
BO16883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-RA | 27..394 | 9..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:32 Download gff for
BO16883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-RA | 27..394 | 9..376 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:32 Download gff for
BO16883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11071053..11071416 | 9..372 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:32 Download gff for
BO16883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11071053..11071416 | 9..372 | 99 | -> | Plus |
BO16883.complete Sequence
394 bp assembled on 2006-10-11
GenBank Submission: FJ633966
> BO16883.complete
GAAGTTATCAGTCGACATGTCGAGCTCTAAACTTGCCCTTCTTATTCTGG
TCATTGCCTGTTTGGTCCTTATCGCATGGGCACGACCCAGGTCGAGATCT
TCAATACTCAATGAGGTCACATCGCTGCCGGCGGAGAGAAGAATGAGCAA
CGAAATCATGGACCAGATATCGCCCATGAGGAGGCCACACAGGAGGGATT
ATTTCGTGAAGAGGCGCCCGGTCATCAGCTCTAGGATGATGATGTCCAGA
AGTCCCTTCCTCGAACGTCTTTACAACGATCCAGTGCCGGAGATTGCACC
AGGTGGAGCCAACTACTTTGGCAATGACGTCCTGCCGCTTTCAACCTACG
AGATCCTGGAACCAGAGTCATTGTATGCAAGCTTTCTAGACCAT
BO16883.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14915-RA | 363 | CG14915-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14915-RA | 506 | CG14915-RA | 27..394 | 9..376 | 1810 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11071053..11071420 | 9..376 | 1810 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:47 has no hits.
BO16883.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:47 Download gff for
BO16883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-RA | 1..363 | 17..377 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:52 Download gff for
BO16883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-RA | 1..365 | 12..376 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:51 Download gff for
BO16883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-RA | 35..394 | 17..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:12 Download gff for
BO16883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14915-RA | 35..394 | 17..378 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:12 Download gff for
BO16883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11071061..11071420 | 17..378 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:51 Download gff for
BO16883.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11071061..11071420 | 17..378 | 99 | | Plus |
BO16883.pep Sequence
Translation from 16 to 394
> BO16883.pep
MSSSKLALLILVIACLVLIAWARPRSRSSILNEVTSLPAERRMSNEIMDQ
ISPMRRPHRRDYFVKRRPVISSRMMMSRSPFLERLYNDPVPEIAPGGANY
FGNDVLPLSTYEILEPESLYASFLDH
BO16883.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14915-PA | 120 | CG14915-PA | 1..120 | 1..120 | 608 | 100 | Plus |
