Clone Sequence Records
BO16884.3prime Sequence
399 bp (399 high quality bases) assembled on 2006-10-13
> BO16884.3prime
ATGGTCTAGAAAGCTTGCACCATCGTGTTTCCTGACCAGTTCTGGTTCAT
TTGGGCACCTGAAGGTCACCTGGATACCATTGGGAAGCCAGCTTTGCGAC
CAGATGTCCACTTGGCACACCTTGGTAGCACCCTGATTATCGATCAGCTC
CACAGAGTAATCATTCTTAAAGCCAGAGACCACCTGGGACGTTGCCGAAA
GAATTTTGGAGAGGCGATAGTGGGGTCCTTCGCCAGCAGCCAATTTGGTC
AAGGATGCCTCAAGCGTTTGCTGGGCACTGGCCAGATCCTCGCCTTCGAG
GACTTTTGGTGCACCGAGTCCAAACGGCGTGGCACTGACCAACACGCAGG
CGGTGCACAGGATTAGAATCTTGGCGAGAAACATGTCGACTGATAACTT
BO16884.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-PA | 369 | CG15369-RA | 1..364 | 384..21 | 1820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-RB | 542 | CG15369-RB | 55..418 | 384..21 | 1820 | 100 | Minus |
CG15369-RA | 444 | CG15369-RA | 55..418 | 384..21 | 1820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9217148..9217342 | 215..21 | 975 | 100 | Minus |
X | 23542271 | X | 9216926..9217095 | 384..215 | 850 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:49:50 has no hits.
BO16884.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:43 Download gff for
BO16884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-PA | 1..369 | 15..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:24 Download gff for
BO16884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 55..423 | 15..384 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:08 Download gff for
BO16884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 55..423 | 15..384 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:08 Download gff for
BO16884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9216926..9217095 | 215..384 | 100 | -> | Minus |
X | 9217149..9217347 | 15..214 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:24 Download gff for
BO16884.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9110959..9111128 | 215..384 | 100 | -> | Minus |
arm_X | 9111182..9111380 | 15..214 | 98 | | Minus |
BO16884.5prime Sequence
398 bp (398 high quality bases) assembled on 2006-10-13
> BO16884.5prime
GAAGTTATCAGTCGACATGTTTCTCGCCAAGATTCTAATCCTGTGCACCG
CCTGCGTGTTGGTCAGTGCCACGCCGTTTGGACTCGGTGCACCAAAAGTC
CTCGAAGGCGAGGATCTGGCCAGTGCCCAGCAAACGCTTGAGGCATCCTT
GACCAAATTGGCTGCTGGCGAAGGACCCCACTATCGCCTCTCCAAAATTC
TTTCGGCAACGTCCCAGGTGGTCTCTGGCTTTAAGAATGATTACTCTGTG
GAGCTGATCGATAATCAGGGTGCTACCAAGGTGTGCCAAGTGGACATCTG
GTCGCAAAGCTGGCTTCCCAATGGTATCCAGGTGACCTTCAGGTGCCCAA
ATGAACCAAAACTGGTCAGGAAACACGATGCTGCAAGCTTTCTAGACC
BO16884.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-PA | 369 | CG15369-RA | 1..366 | 17..382 | 1805 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:45:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-RB | 542 | CG15369-RB | 55..420 | 17..382 | 1815 | 99.7 | Plus |
CG15369-RA | 444 | CG15369-RA | 55..420 | 17..382 | 1815 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9217148..9217344 | 186..382 | 970 | 99.5 | Plus |
X | 23542271 | X | 9216926..9217095 | 17..186 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:45:20 has no hits.
BO16884.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:43 Download gff for
BO16884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-PA | 1..369 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:34 Download gff for
BO16884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 55..423 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:59:46 Download gff for
BO16884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 55..423 | 17..386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:59:46 Download gff for
BO16884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9216926..9217095 | 17..186 | 100 | -> | Plus |
X | 9217149..9217347 | 187..386 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:34 Download gff for
BO16884.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9110959..9111128 | 17..186 | 100 | -> | Plus |
arm_X | 9111182..9111380 | 187..386 | 98 | | Plus |
BO16884.complete Sequence
400 bp assembled on 2006-10-11
GenBank Submission: FJ633967
> BO16884.complete
GAAGTTATCAGTCGACATGTTTCTCGCCAAGATTCTAATCCTGTGCACCG
CCTGCGTGTTGGTCAGTGCCACGCCGTTTGGACTCGGTGCACCAAAAGTC
CTCGAAGGCGAGGATCTGGCCAGTGCCCAGCAAACGCTTGAGGCATCCTT
GACCAAATTGGCTGCTGGCGAAGGACCCCACTATCGCCTCTCCAAAATTC
TTTCGGCAACGTCCCAGGTGGTCTCTGGCTTTAAGAATGATTACTCTGTG
GAGCTGATCGATAATCAGGGTGCTACCAAGGTGTGCCAAGTGGACATCTG
GTCGCAAAGCTGGCTTCCCAATGGTATCCAGGTGACCTTCAGGTGCCCAA
ATGAACCAGAACTGGTCAGGAAACACGATGCTGCAAGCTTTCTAGACCAT
BO16884.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-RB | 369 | CG15369-PB | 1..366 | 17..382 | 1830 | 100 | Plus |
CG15369-RA | 369 | CG15369-PA | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:56:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-RB | 542 | CG15369-RB | 55..420 | 17..382 | 1830 | 100 | Plus |
CG15369-RA | 444 | CG15369-RA | 55..420 | 17..382 | 1830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:56:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9217148..9217344 | 186..382 | 985 | 100 | Plus |
X | 23542271 | X | 9216926..9217095 | 17..186 | 850 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:56:53 has no hits.
BO16884.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:50 Download gff for
BO16884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 1..369 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:57 Download gff for
BO16884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 34..402 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:57 Download gff for
BO16884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 61..420 | 23..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:50 Download gff for
BO16884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 34..402 | 17..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:31:37 Download gff for
BO16884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15369-RA | 61..420 | 23..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:31:37 Download gff for
BO16884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9216932..9217095 | 23..186 | 100 | -> | Plus |
X | 9217149..9217344 | 187..384 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:57 Download gff for
BO16884.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9110965..9111128 | 23..186 | 100 | -> | Plus |
arm_X | 9111182..9111377 | 187..384 | 98 | | Plus |
BO16884.pep Sequence
Translation from 16 to 400
> BO16884.pep
MFLAKILILCTACVLVSATPFGLGAPKVLEGEDLASAQQTLEASLTKLAA
GEGPHYRLSKILSATSQVVSGFKNDYSVELIDNQGATKVCQVDIWSQSWL
PNGIQVTFRCPNEPELVRKHDAASFLDH
BO16884.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15369-PB | 122 | CG15369-PB | 1..122 | 1..122 | 628 | 100 | Plus |
CG15369-PA | 122 | CG15369-PA | 1..122 | 1..122 | 628 | 100 | Plus |
CG31313-PB | 124 | CG31313-PB | 7..120 | 6..116 | 188 | 37.4 | Plus |
CG31313-PA | 124 | CG31313-PA | 7..120 | 6..116 | 188 | 37.4 | Plus |
Cys-PA | 126 | CG8050-PA | 12..118 | 7..113 | 179 | 38 | Plus |