Clone Sequence Records
BO16885.3prime Sequence
428 bp (428 high quality bases) assembled on 2006-10-13
> BO16885.3prime
ATGGTCTAGAAAGCTTGCCAGTAATGGGAGATTTGCTTTCAGAGCGTCGA
ACTCCTTCTTTTCTAAGGGCTTAAGATGTGTACCCGAGAAGGGCGATTTG
AACTCCAAATCGCGATGTTTGTTCACCAGAACTTTCTGATCTGAGTATAT
CAGATTGATTTGCTGTTCTATTTTCTGTTGATCTTTTTTGAGCAGTTCCA
ATGCCTTTTCCCGCTCCATTTTGACTAGCATACTGCCAATAGTGATCCAA
ACTTTCTTGTCCTCCGACTTCTCCATCAGCCGCATTGCCTGCCGGGTTTC
TTGGCGGCGTTTATCCATTACCGTCAGTTCCTGCTTGTTGACCAGAATTT
TGTCGGCCAACTCCTCGGTCTTGGTTATTATCTCAATACTTTTGTTCAGA
TCTGTTTGCGACATGTCGACTGATAACT
BO16885.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15863-PA | 399 | CG15863-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15863-RA | 562 | CG15863-RA | 58..453 | 414..19 | 1980 | 100 | Minus |
| Pal1-RA | 2621 | CG12130-RA | 1..86 | 288..373 | 430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9959444..9959675 | 183..414 | 1160 | 100 | Plus |
| 2R | 25286936 | 2R | 9959228..9959393 | 19..184 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:09:37 has no hits.
BO16885.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:44 Download gff for
BO16885.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-PA | 1..399 | 16..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:03 Download gff for
BO16885.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 58..463 | 11..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:27:37 Download gff for
BO16885.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 58..463 | 11..414 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:27:37 Download gff for
BO16885.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9959218..9959391 | 11..182 | 97 | <- | Plus |
| 2R | 9959444..9959675 | 183..414 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:03 Download gff for
BO16885.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5846723..5846896 | 11..182 | 97 | <- | Plus |
| arm_2R | 5846949..5847180 | 183..414 | 100 | | Plus |
BO16885.5prime Sequence
428 bp (428 high quality bases) assembled on 2006-10-13
> BO16885.5prime
GAAGTTATCAGTCGACATGTCGCAAACAGATCTGAACAAAAGTATTGAGA
TAATAACCAAGACCGAGGAGTTGGCCGACAAAATTCTGGTCAACAAGCAG
GAACTGACGGTAATGGATAAACGCCGCCAAGAAACCCGGCAGGCAATGCG
GCTGATGGAGAAGTCGGAGGACAAGAAAGTTTGGATCACTATTGGCAGTA
TGCTAGTCAAAATGGAGCGGGAAAAGGCATTGGAACTGCTCAAAAAAGAT
CAACAGAAAATAGAACAGCAAATCAATCTGATATACTCAGATCAGAAAGT
TCTGGTGAACAAACATCGCGATTTGGAGTTCAAATCGCCCTTCTCGGGTA
CACATCTTAAGCCCTTAGAAAAGAAGGAGTTCGACGCTCTGAAAGCAAAT
CTCCCATTACTGGCAAGCTTTCTAGACC
BO16885.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15863-PA | 399 | CG15863-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15863-RA | 562 | CG15863-RA | 58..453 | 17..412 | 1980 | 100 | Plus |
| Pal1-RA | 2621 | CG12130-RA | 1..86 | 143..58 | 430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9959444..9959675 | 248..17 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 9959228..9959393 | 412..247 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:27:45 has no hits.
BO16885.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:45 Download gff for
BO16885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-PA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:14 Download gff for
BO16885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 58..463 | 17..420 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:06 Download gff for
BO16885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 58..463 | 17..420 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:06 Download gff for
BO16885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9959218..9959391 | 249..420 | 97 | <- | Minus |
| 2R | 9959444..9959675 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:14 Download gff for
BO16885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5846723..5846896 | 249..420 | 97 | <- | Minus |
| arm_2R | 5846949..5847180 | 17..248 | 100 | | Minus |
BO16885.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ633968
> BO16885.complete
GAAGTTATCAGTCGACATGTCGCAAACAGATCTGAACAAAAGTATTGAGA
TAATAACCAAGACCGAGGAGTTGGCCGACAAAATTCTGGTCAACAAGCAG
GAACTGACGGTAATGGATAAACGCCGCCAAGAAACCCGGCAGGCAATGCG
GCTGATGGAGAAGTCGGAGGACAAGAAAGTTTGGATCACTATTGGCAGTA
TGCTAGTCAAAATGGAGCGGGAAAAGGCATTGGAACTGCTCAAAAAAGAT
CAACAGAAAATAGAACAGCAAATCAATCTGATATACTCAGATCAGAAAGT
TCTGGTGAACAAACATCGCGATTTGGAGTTCAAATCGCCCTTCTCGGGTA
CACATCTTAAGCCCTTAGAAAAGAAGGAGTTCGACGCTCTGAAAGCAAAT
CTCCCATTACTGGCAAGCTTTCTAGACCAT
BO16885.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15863-RA | 399 | CG15863-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15863-RA | 562 | CG15863-RA | 58..453 | 17..412 | 1980 | 100 | Plus |
| Pal1-RA | 2621 | CG12130-RA | 1..86 | 143..58 | 430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9959444..9959675 | 248..17 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 9959228..9959393 | 412..247 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:38:21 has no hits.
BO16885.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:04 Download gff for
BO16885.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:22 Download gff for
BO16885.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:40:44 Download gff for
BO16885.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 58..453 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:05 Download gff for
BO16885.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 1..399 | 17..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:00:22 Download gff for
BO16885.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15863-RA | 58..453 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:00:22 Download gff for
BO16885.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9959225..9959391 | 249..414 | 98 | <- | Minus |
| 2R | 9959444..9959675 | 17..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:40:44 Download gff for
BO16885.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5846730..5846896 | 249..414 | 98 | <- | Minus |
| arm_2R | 5846949..5847180 | 17..248 | 100 | | Minus |
BO16885.pep Sequence
Translation from 16 to 430
> BO16885.pep
MSQTDLNKSIEIITKTEELADKILVNKQELTVMDKRRQETRQAMRLMEKS
EDKKVWITIGSMLVKMEREKALELLKKDQQKIEQQINLIYSDQKVLVNKH
RDLEFKSPFSGTHLKPLEKKEFDALKANLPLLASFLDH
BO16885.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15863-PA | 132 | CG15863-PA | 1..132 | 1..132 | 653 | 100 | Plus |
