Clone Sequence Records
BO16888.3prime Sequence
377 bp (377 high quality bases) assembled on 2006-10-13
> BO16888.3prime
ATGGTCTAGAAAGCTTGCGAAATGCCAGGTGCCCCGAATGCCGCCTTCGT
AGTTGTTCCGATTGTAGTCGAAATTCCGACTGGCCTGGGCGTAGGCGTCG
ATGCTGCCACGCCCATCGCCACTACTATACAGATTGTGGTTGTACTGAAC
ACTAGCCTCCCGACCCACTTGGTTGTCCTTGCTGGCGGTTACGACCACGG
ATCCTCCCTCAGGCGATCGAGCACGGCGTACCAAGGGTGCCACTTGGAGC
AGCTGCTCTGGACTGGTCTGGAACTCCTCGGGATATGGTTGACGATAGGA
GGCCACTATTGTCACCAGACAGCAGGACACGAGGATCAGTATTCCGCACT
TGTTGGAGAACATGTCGACTGATAACT
BO16888.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32185-PA | 348 | CG32185-RA | 1..345 | 363..19 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| edin-RA | 421 | CG32185-RA | 10..354 | 363..19 | 1725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17494889..17495233 | 363..19 | 1725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:55:15 has no hits.
BO16888.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:48 Download gff for
BO16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32185-PA | 1..348 | 16..363 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:08 Download gff for
BO16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| edin-RA | 2..359 | 13..371 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:37 Download gff for
BO16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| edin-RA | 2..359 | 13..371 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:37 Download gff for
BO16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17494881..17495238 | 13..371 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:08 Download gff for
BO16888.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17487981..17488338 | 13..371 | 98 | | Minus |
BO16888.5prime Sequence
377 bp (377 high quality bases) assembled on 2006-10-13
> BO16888.5prime
GAAGTTATCAGTCGACATGTTCTCCAACAAGTGCGGAATACTGATCCTCG
TGTCCTGCTGTCTGGTGACAATAGTGGCCTCCTATCGTCAACCATATCCC
GAGGAGTTCCAGACCAGTCCAGAGCAGCTGCTCCAAGTGGCACCCTTGGT
ACGCCGTGCTCGATCGCCTGAGGGAGGATCCGTGGTCGTAACCGCCAGCA
AGGACAACCAAGTGGGTCGGGAGGCTAGTGTTCAGTACAACCACAATCTG
TATAGTAGTGGCGATGGGCGTGGCAGCATCGACGCCTACGCCCAGGCCAG
TCGGAATTTCGACTACAATCGGAACAACTACGAAGGCGGCATTCGGGGCA
CCTGGCATTTCGCAAGCTTTCTAGACC
BO16888.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32185-PA | 348 | CG32185-RA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| edin-RA | 421 | CG32185-RA | 10..354 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17494889..17495233 | 17..361 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:24:41 has no hits.
BO16888.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:48 Download gff for
BO16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32185-PA | 1..348 | 17..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:23 Download gff for
BO16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| edin-RA | 2..359 | 9..367 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:13 Download gff for
BO16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| edin-RA | 2..359 | 9..367 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:13 Download gff for
BO16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17494881..17495238 | 9..367 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:23 Download gff for
BO16888.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17487981..17488338 | 9..367 | 98 | | Plus |
BO16888.complete Sequence
379 bp assembled on 2006-10-11
GenBank Submission: FJ633969
> BO16888.complete
GAAGTTATCAGTCGACATGTTCTCCAACAAGTGCGGAATACTGATCCTCG
TGTCCTGCTGTCTGGTGACAATAGTGGCCTCCTATCGTCAACCATATCCC
GAGGAGTTCCAGACCAGTCCAGAGCAGCTGCTCCAAGTGGCACCCTTGGT
ACGCCGTGCTCGATCGCCTGAGGGAGGATCCGTGGTCGTAACCGCCAGCA
AGGACAACCAAGTGGGTCGGGAGGCTAGTGTTCAGTACAACCACAATCTG
TATAGTAGTGGCGATGGGCGTGGCAGCATCGACGCCTACGCCCAGGCCAG
TCGGAATTTCGACTACAATCGGAACAACTACGAAGGCGGCATTCGGGGCA
CCTGGCATTTCGCAAGCTTTCTAGACCAT
BO16888.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| edin-RA | 348 | CG32185-PA | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| edin-RA | 421 | CG32185-RA | 10..354 | 17..361 | 1725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17494889..17495233 | 17..361 | 1725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:20:09 has no hits.
BO16888.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:49 Download gff for
BO16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32185-RA | 1..348 | 17..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:56 Download gff for
BO16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32185-RA | 1..348 | 17..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:41 Download gff for
BO16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| edin-RA | 15..354 | 22..363 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:49 Download gff for
BO16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32185-RA | 1..348 | 17..364 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:14 Download gff for
BO16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| edin-RA | 15..354 | 22..363 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:14 Download gff for
BO16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17494894..17495233 | 22..363 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:41 Download gff for
BO16888.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17487994..17488333 | 22..363 | 99 | | Plus |
BO16888.pep Sequence
Translation from 16 to 379
> BO16888.pep
MFSNKCGILILVSCCLVTIVASYRQPYPEEFQTSPEQLLQVAPLVRRARS
PEGGSVVVTASKDNQVGREASVQYNHNLYSSGDGRGSIDAYAQASRNFDY
NRNNYEGGIRGTWHFASFLDH
BO16888.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| edin-PA | 115 | CG32185-PA | 1..115 | 1..115 | 607 | 100 | Plus |
