Clone Sequence Records
BO16889.3prime Sequence
248 bp (248 high quality bases) assembled on 2006-10-13
> BO16889.3prime
ATGGTCTAGAAAGCTTGCCTTCTGTTCCCGGAGCTTCGGTTCTTTTTGGG
CTTTCTGGTCCAGTGGTTGCTTCGCCGCGTCCTTGTTGGATTGTGGGGCG
GGATTGCATCGGGGTAGTTGGGACTCCGGGCAAACTCCGCACTCCGGAAC
CGTGCAGTGGCCCTCCTCCAAGCAATCGGGGTCACAGCAGGGCGGATCGG
GTCCAATGTAGCCCGGATTAAATATGCAAGGCATGTCGACTGATAACT
BO16889.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5693-PA | 219 | CG5693-RA | 1..216 | 234..19 | 1080 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:28:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5693-RA | 590 | CG5693-RA | 156..372 | 235..19 | 1085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:28:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18006782..18006998 | 235..19 | 1085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:28:04 has no hits.
BO16889.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:49 Download gff for
BO16889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-PA | 1..219 | 18..234 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:06:15 Download gff for
BO16889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 156..372 | 19..235 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:08 Download gff for
BO16889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 156..372 | 19..235 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:08 Download gff for
BO16889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18006782..18007000 | 14..235 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:06:15 Download gff for
BO16889.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18006782..18007000 | 14..235 | 98 | -> | Minus |
BO16889.5prime Sequence
248 bp (248 high quality bases) assembled on 2006-10-13
> BO16889.5prime
GAAGTTATCAGTCGACATGCCTTGCATATTTAATCCGGGCTACATTGGAC
CCGATCCGCCCTGCTGTGACCCCGATTGCTTGGAGGAGGGCCACTGCACG
GTTCCGGAGTGCGGAGTTTGCCCGGAGTCCCAACTACCCCGATGCAATCC
CGCCCCACAATCCAACAAGGACGCGGCGAAGCAACCACTGGACCAGAAAG
CCCAAAAAGAACCGAAGCTCCGGGAACAGAAGGCAAGCTTTCTAGACC
BO16889.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5693-PA | 219 | CG5693-RA | 1..216 | 17..232 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:50:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5693-RA | 590 | CG5693-RA | 156..372 | 16..232 | 1085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:50:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18006782..18006998 | 16..232 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:50:29 has no hits.
BO16889.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:49 Download gff for
BO16889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-PA | 1..219 | 17..233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:30 Download gff for
BO16889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 156..372 | 16..232 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:14 Download gff for
BO16889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 156..372 | 16..232 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:14 Download gff for
BO16889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18006782..18007000 | 16..237 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:30 Download gff for
BO16889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18006782..18007000 | 16..237 | 98 | -> | Plus |
BO16889.complete Sequence
250 bp assembled on 2006-10-11
GenBank Submission: FJ633970
> BO16889.complete
GAAGTTATCAGTCGACATGCCTTGCATATTTAATCCGGGCTACATTGGAC
CCGATCCGCCCTGCTGTGACCCCGATTGCTTGGAGGAGGGCCACTGCACG
GTTCCGGAGTGCGGAGTTTGCCCGGAGTCCCAACTACCCCGATGCAATCC
CGCCCCACAATCCAACAAGGACGCGGCGAAGCAACCACTGGACCAGAAAG
CCCAAAAAGAACCGAAGCTCCGGGAACAGAAGGCAAGCTTTCTAGACCAT
BO16889.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:09:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5693-RA | 219 | CG5693-PA | 1..216 | 17..232 | 1080 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5693-RA | 590 | CG5693-RA | 156..372 | 16..232 | 1085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:09:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18006782..18006998 | 16..232 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:09:40 has no hits.
BO16889.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:40 Download gff for
BO16889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 1..219 | 17..233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:09 Download gff for
BO16889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 104..320 | 16..232 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:16 Download gff for
BO16889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 157..372 | 17..234 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:41 Download gff for
BO16889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 104..320 | 16..232 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:04:34 Download gff for
BO16889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5693-RA | 157..372 | 17..234 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:04:34 Download gff for
BO16889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18006783..18006998 | 17..234 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:16 Download gff for
BO16889.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18006783..18006998 | 17..234 | 99 | | Plus |
BO16889.pep Sequence
Translation from 16 to 250
> BO16889.pep
MPCIFNPGYIGPDPPCCDPDCLEEGHCTVPECGVCPESQLPRCNPAPQSN
KDAAKQPLDQKAQKEPKLREQKASFLDH
BO16889.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5693-PA | 72 | CG5693-PA | 1..72 | 1..72 | 422 | 100 | Plus |
