Clone Sequence Records
BO16890.3prime Sequence
578 bp (578 high quality bases) assembled on 2006-10-13
> BO16890.3prime
ATGGTCTAGAAAGCTTGCACGAATGACAGGCTCCCCATCGAGTTTCTTCA
TGTTGGGCAGACGACGGACTGCCTCGGCAGTGAAGGCAGACTGGTCCATG
TTCTCGTTCAAAGGATTTCCCACAAATGTGATCTCGCTGAGATTTGGTGG
AACACCCATGCGCATGAACTCCGTCCAGTCCTTGATCATATTAAAGGATA
TGTAAAACACACGCAGGGCCTTCATCGATTCCAGGGGCTTGGTCTTCTCG
ATGTTGTTGTAGCTGACCCACAATTCCTCCAGAGTATCGGCCAGTGGTTC
TATGCCGTTGAGCGTTTTAAGATTGTTACGTGCCAGGCTCAGGACTTTCA
GGTTCTTCATTCCCGAAATTCCAGTAATCTTCTCAATCATATTTGAGGAC
AAGCTGAGCTTTTGGCACTCGGTAAGGGAATTGAGAATCGGATCCATTTT
CTCGATCGGCGGATACTGAAACTGAAGTCCAATTTCCGTGGCAGTGGCGG
CTGGCTGCTTATTGCGGTCCTCCCACTTGGCCAATGCGTCCTTTAGGGTT
GTCGGCTTCGACATGTCGACTGATAACT
BO16890.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-PA | 549 | CG10839-RA | 1..546 | 564..19 | 2730 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-RB | 1300 | CG10839-RB | 86..632 | 565..19 | 2735 | 100 | Minus |
CG10839-RC | 1023 | CG10839-RC | 86..632 | 565..19 | 2735 | 100 | Minus |
CG10839-RA | 692 | CG10839-RA | 86..632 | 565..19 | 2735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15979571..15980117 | 565..19 | 2735 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:55:21 has no hits.
BO16890.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:51 Download gff for
BO16890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-PA | 1..549 | 18..564 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:10 Download gff for
BO16890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 78..632 | 19..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:48 Download gff for
BO16890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 78..632 | 19..573 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:48 Download gff for
BO16890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15979563..15980121 | 14..573 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:10 Download gff for
BO16890.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15979563..15980121 | 14..573 | 98 | <- | Minus |
BO16890.5prime Sequence
578 bp (578 high quality bases) assembled on 2006-10-13
> BO16890.5prime
GAAGTTATCAGTCGACATGTCGAAGCCGACAACCCTAAAGGACGCATTGG
CCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGAAATT
GGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAA
TTCCCTTACCGAGTGCCAAAAGCTCAGCTTGTCCTCAAATATGATTGAGA
AGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCA
CGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCT
GGAGGAATTGTGGGTCAGCTACAACAACATCGAGAAGACCAAGCCCCTGG
AATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAG
GACTGGACGGAGTTCATGCGCATGGGTGTTCCACCAAATCTCAGCGAGAT
CACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCCTTCA
CTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAG
CCTGTCATTCGTGCAAGCTTTCTAGACC
BO16890.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-PA | 549 | CG10839-RA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-RB | 1300 | CG10839-RB | 86..632 | 16..562 | 2735 | 100 | Plus |
CG10839-RC | 1023 | CG10839-RC | 86..632 | 16..562 | 2735 | 100 | Plus |
CG10839-RA | 692 | CG10839-RA | 86..632 | 16..562 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15979571..15980117 | 16..562 | 2735 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:13:58 has no hits.
BO16890.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:52 Download gff for
BO16890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-PA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:52 Download gff for
BO16890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 78..632 | 8..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:00 Download gff for
BO16890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 78..632 | 8..562 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:00 Download gff for
BO16890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15979563..15980117 | 8..562 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:52 Download gff for
BO16890.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15979563..15980117 | 8..562 | 99 | | Plus |
BO16890.complete Sequence
580 bp assembled on 2006-10-11
GenBank Submission: FJ633971
> BO16890.complete
GAAGTTATCAGTCGACATGTCGAAGCCGACAACCCTAAAGGACGCATTGG
CCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGAAATT
GGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAA
TTCCCTTACCGAGTGCCAAAAGCTCAGCTTGTCCTCAAATATGATTGAGA
AGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCA
CGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCT
GGAGGAATTGTGGGTCAGCTACAACAACATCGAGAAGACCAAGCCCCTGG
AATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAG
GACTGGACGGAGTTCATGCGCATGGGTGTTCCACCAAATCTCAGCGAGAT
CACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCCTTCA
CTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAG
CCTGTCATTCGTGCAAGCTTTCTAGACCAT
BO16890.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-RB | 549 | CG10839-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
CG10839-RC | 549 | CG10839-PC | 1..546 | 17..562 | 2730 | 100 | Plus |
CG10839-RA | 549 | CG10839-PA | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-RB | 1300 | CG10839-RB | 86..632 | 16..562 | 2735 | 100 | Plus |
CG10839-RC | 1023 | CG10839-RC | 86..632 | 16..562 | 2735 | 100 | Plus |
CG10839-RA | 692 | CG10839-RA | 86..632 | 16..562 | 2735 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 15979571..15980117 | 16..562 | 2735 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:06:50 has no hits.
BO16890.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:58 Download gff for
BO16890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 1..549 | 17..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:55 Download gff for
BO16890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 38..583 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:02 Download gff for
BO16890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 87..632 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:59 Download gff for
BO16890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 29..583 | 8..562 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:12 Download gff for
BO16890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10839-RA | 87..632 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:12 Download gff for
BO16890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 15979572..15980117 | 17..564 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:02 Download gff for
BO16890.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 15979572..15980117 | 17..564 | 99 | | Plus |
BO16890.pep Sequence
Translation from 16 to 580
> BO16890.pep
MSKPTTLKDALAKWEDRNKQPAATATEIGLQFQYPPIEKMDPILNSLTEC
QKLSLSSNMIEKITGISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWV
SYNNIEKTKPLESMKALRVFYISFNMIKDWTEFMRMGVPPNLSEITFVGN
PLNENMDQSAFTAEAVRRLPNMKKLDGEPVIRASFLDH
BO16890.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10839-PB | 182 | CG10839-PB | 1..182 | 1..182 | 934 | 100 | Plus |
CG10839-PC | 182 | CG10839-PC | 1..182 | 1..182 | 934 | 100 | Plus |
CG10839-PA | 182 | CG10839-PA | 1..182 | 1..182 | 934 | 100 | Plus |
CG8800-PA | 188 | CG8800-PA | 1..181 | 1..181 | 553 | 56.4 | Plus |