Clone BO16890 Report

Search the DGRC for BO16890

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:90
Vector:pDNR-Dual
Associated Gene/TranscriptCG10839-RA
Protein status:BO16890.pep: validated full length
Sequenced Size:580

Clone Sequence Records

BO16890.3prime Sequence

578 bp (578 high quality bases) assembled on 2006-10-13

> BO16890.3prime
ATGGTCTAGAAAGCTTGCACGAATGACAGGCTCCCCATCGAGTTTCTTCA
TGTTGGGCAGACGACGGACTGCCTCGGCAGTGAAGGCAGACTGGTCCATG
TTCTCGTTCAAAGGATTTCCCACAAATGTGATCTCGCTGAGATTTGGTGG
AACACCCATGCGCATGAACTCCGTCCAGTCCTTGATCATATTAAAGGATA
TGTAAAACACACGCAGGGCCTTCATCGATTCCAGGGGCTTGGTCTTCTCG
ATGTTGTTGTAGCTGACCCACAATTCCTCCAGAGTATCGGCCAGTGGTTC
TATGCCGTTGAGCGTTTTAAGATTGTTACGTGCCAGGCTCAGGACTTTCA
GGTTCTTCATTCCCGAAATTCCAGTAATCTTCTCAATCATATTTGAGGAC
AAGCTGAGCTTTTGGCACTCGGTAAGGGAATTGAGAATCGGATCCATTTT
CTCGATCGGCGGATACTGAAACTGAAGTCCAATTTCCGTGGCAGTGGCGG
CTGGCTGCTTATTGCGGTCCTCCCACTTGGCCAATGCGTCCTTTAGGGTT
GTCGGCTTCGACATGTCGACTGATAACT

BO16890.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-PA 549 CG10839-RA 1..546 564..19 2730 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-RB 1300 CG10839-RB 86..632 565..19 2735 100 Minus
CG10839-RC 1023 CG10839-RC 86..632 565..19 2735 100 Minus
CG10839-RA 692 CG10839-RA 86..632 565..19 2735 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:55:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15979571..15980117 565..19 2735 100 Minus
Blast to na_te.dros performed on 2015-02-12 03:55:21 has no hits.

BO16890.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:51 Download gff for BO16890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-PA 1..549 18..564 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:32:10 Download gff for BO16890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 78..632 19..573 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:50:48 Download gff for BO16890.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 78..632 19..573 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:50:48 Download gff for BO16890.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 15979563..15980121 14..573 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:32:10 Download gff for BO16890.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15979563..15980121 14..573 98 <- Minus

BO16890.5prime Sequence

578 bp (578 high quality bases) assembled on 2006-10-13

> BO16890.5prime
GAAGTTATCAGTCGACATGTCGAAGCCGACAACCCTAAAGGACGCATTGG
CCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGAAATT
GGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAA
TTCCCTTACCGAGTGCCAAAAGCTCAGCTTGTCCTCAAATATGATTGAGA
AGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCA
CGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCT
GGAGGAATTGTGGGTCAGCTACAACAACATCGAGAAGACCAAGCCCCTGG
AATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAG
GACTGGACGGAGTTCATGCGCATGGGTGTTCCACCAAATCTCAGCGAGAT
CACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCCTTCA
CTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAG
CCTGTCATTCGTGCAAGCTTTCTAGACC

BO16890.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-PA 549 CG10839-RA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-RB 1300 CG10839-RB 86..632 16..562 2735 100 Plus
CG10839-RC 1023 CG10839-RC 86..632 16..562 2735 100 Plus
CG10839-RA 692 CG10839-RA 86..632 16..562 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:13:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15979571..15980117 16..562 2735 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:13:58 has no hits.

BO16890.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:52 Download gff for BO16890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-PA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:52 Download gff for BO16890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 78..632 8..562 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:00 Download gff for BO16890.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 78..632 8..562 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:00 Download gff for BO16890.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 15979563..15980117 8..562 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:52 Download gff for BO16890.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15979563..15980117 8..562 99   Plus

BO16890.complete Sequence

580 bp assembled on 2006-10-11

GenBank Submission: FJ633971

> BO16890.complete
GAAGTTATCAGTCGACATGTCGAAGCCGACAACCCTAAAGGACGCATTGG
CCAAGTGGGAGGACCGCAATAAGCAGCCAGCCGCCACTGCCACGGAAATT
GGACTTCAGTTTCAGTATCCGCCGATCGAGAAAATGGATCCGATTCTCAA
TTCCCTTACCGAGTGCCAAAAGCTCAGCTTGTCCTCAAATATGATTGAGA
AGATTACTGGAATTTCGGGAATGAAGAACCTGAAAGTCCTGAGCCTGGCA
CGTAACAATCTTAAAACGCTCAACGGCATAGAACCACTGGCCGATACTCT
GGAGGAATTGTGGGTCAGCTACAACAACATCGAGAAGACCAAGCCCCTGG
AATCGATGAAGGCCCTGCGTGTGTTTTACATATCCTTTAATATGATCAAG
GACTGGACGGAGTTCATGCGCATGGGTGTTCCACCAAATCTCAGCGAGAT
CACATTTGTGGGAAATCCTTTGAACGAGAACATGGACCAGTCTGCCTTCA
CTGCCGAGGCAGTCCGTCGTCTGCCCAACATGAAGAAACTCGATGGGGAG
CCTGTCATTCGTGCAAGCTTTCTAGACCAT

BO16890.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-RB 549 CG10839-PB 1..546 17..562 2730 100 Plus
CG10839-RC 549 CG10839-PC 1..546 17..562 2730 100 Plus
CG10839-RA 549 CG10839-PA 1..546 17..562 2730 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-RB 1300 CG10839-RB 86..632 16..562 2735 100 Plus
CG10839-RC 1023 CG10839-RC 86..632 16..562 2735 100 Plus
CG10839-RA 692 CG10839-RA 86..632 16..562 2735 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:06:50
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 15979571..15980117 16..562 2735 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:06:50 has no hits.

BO16890.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:08:58 Download gff for BO16890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 1..549 17..563 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:48:55 Download gff for BO16890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 38..583 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:02 Download gff for BO16890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 87..632 17..564 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:08:59 Download gff for BO16890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 29..583 8..562 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:11:12 Download gff for BO16890.complete
Subject Subject Range Query Range Percent Splice Strand
CG10839-RA 87..632 17..564 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:11:12 Download gff for BO16890.complete
Subject Subject Range Query Range Percent Splice Strand
2L 15979572..15980117 17..564 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:02 Download gff for BO16890.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 15979572..15980117 17..564 99   Plus

BO16890.pep Sequence

Translation from 16 to 580

> BO16890.pep
MSKPTTLKDALAKWEDRNKQPAATATEIGLQFQYPPIEKMDPILNSLTEC
QKLSLSSNMIEKITGISGMKNLKVLSLARNNLKTLNGIEPLADTLEELWV
SYNNIEKTKPLESMKALRVFYISFNMIKDWTEFMRMGVPPNLSEITFVGN
PLNENMDQSAFTAEAVRRLPNMKKLDGEPVIRASFLDH

BO16890.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG10839-PB 182 CG10839-PB 1..182 1..182 934 100 Plus
CG10839-PC 182 CG10839-PC 1..182 1..182 934 100 Plus
CG10839-PA 182 CG10839-PA 1..182 1..182 934 100 Plus
CG8800-PA 188 CG8800-PA 1..181 1..181 553 56.4 Plus