Clone Sequence Records
BO16893.3prime Sequence
551 bp (551 high quality bases) assembled on 2006-10-13
> BO16893.3prime
ATGGTCTAGAAAGCTTGCGTTGAGATAGTCCAGCTCATAGACCGTATTGC
CGCCGTTGCCCTTGACCACCTTAATATCGCACACGAAGCACGTGGCAATC
TCATTGTCCTGATCGACCAGATAGATCTCGATCTTCACGCCAATCTCGGG
ATATTCACCAATGGGAAAGGTGAACAAATAGGAGACATCCTCGGTGGGAT
ACAGCGGGCAATAGGCGCCGTACTGGAGATTCGGGCACACGGCAGCCACA
TCCGCAGGCAGTTCATATGGCACCGTAATGATTCCGAGTGTGGTGGCCTT
TACCAAGGTCGTCAGCTGGGTGATGTACTTGTCCACGGCGAAATCGATCT
CGAACTTCTGTGTCGTTCCCTTCACAATCTGACAGGGTGGAGTAACGCAA
TTGTGCACACGCACCTCAAGCGGAAAAGGTTTACTTCCGGAACATTTCTT
CACAGATGTCGCCGGATGCTCCTGCTGAGCCTCAGCCAGCGATAGTAATA
ATCCTAGGGAGATCAGAACCAACACCTTAACTTCCATGTCGACTGATAAC
T
BO16893.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12813-PA | 522 | CG12813-RA | 1..519 | 537..19 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 661 | CG12813-RA | 3..523 | 539..19 | 2605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10055494..10055918 | 19..443 | 2125 | 100 | Plus |
| 3R | 32079331 | 3R | 10055984..10056081 | 442..539 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:59:04 has no hits.
BO16893.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:53 Download gff for
BO16893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-PA | 1..522 | 16..537 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:40 Download gff for
BO16893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 11..539 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:38 Download gff for
BO16893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 11..539 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:38 Download gff for
BO16893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10055487..10055918 | 11..443 | 99 | <- | Plus |
| 3R | 10055986..10056085 | 444..544 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:40 Download gff for
BO16893.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5881209..5881640 | 11..443 | 99 | <- | Plus |
| arm_3R | 5881708..5881807 | 444..544 | 97 | | Plus |
BO16893.5prime Sequence
551 bp (551 high quality bases) assembled on 2006-10-13
> BO16893.5prime
GAAGTTATCAGTCGACATGGAAGTTAAGGTGTTGGTTCTGATCTCCCTAG
GATTATTACTATCGCTGGCTGAGGCTCAGCAGGAGCATCCGGCGACATCT
GTGAAGAAATGTTCCGGAAGTAAACCTTTTCCGCTTGAGGTGCGTGTGCA
CAATTGCGTTACTCCACCCTGTCAGATTGTGAAGGGAACGACACAGAAGT
TCGAGATCGATTTCGCCGTGGACAAGTACATCACCCAGCTGACGACCTTG
GTAAAGGCCACCACACTCGGAATCATTACGGTGCCATATGAACTGCCTGC
GGATGTGGCTGCCGTGTGCCCGAATCTCCAGTACGGCGCCTATTGCCCGC
TGTATCCCACCGAGGATGTCTCCTATTTGTTCACCTTTCCCATTGGTGAA
TATCCCGAGATTGGCGTGAAGATCGAGATCTATCTGGTCGATCAGGACAA
TGAGATTGCCACGTGCTTCGTGTGCGATATTAAGGTGGTCAAGGGCAACG
GCGGCAATACGGTCTATGAGCTGGACTATCTCAACGCAAGCTTTCTAGAC
C
BO16893.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12813-PA | 522 | CG12813-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:14:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 661 | CG12813-RA | 3..523 | 15..535 | 2605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:14:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10055494..10055918 | 535..111 | 2125 | 100 | Minus |
| 3R | 32079331 | 3R | 10055984..10056081 | 112..15 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:14:22 has no hits.
BO16893.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:54 Download gff for
BO16893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-PA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:11:54 Download gff for
BO16893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 15..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:45:05 Download gff for
BO16893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 3..530 | 15..543 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:45:05 Download gff for
BO16893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10055487..10055918 | 111..543 | 99 | <- | Minus |
| 3R | 10055986..10056085 | 10..110 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:11:54 Download gff for
BO16893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5881209..5881640 | 111..543 | 99 | <- | Minus |
| arm_3R | 5881708..5881807 | 10..110 | 97 | | Minus |
BO16893.complete Sequence
553 bp assembled on 2006-10-11
GenBank Submission: FJ633972
> BO16893.complete
GAAGTTATCAGTCGACATGGAAGTTAAGGTGTTGGTTCTGATCTCCCTAG
GATTATTACTATCGCTGGCTGAGGCTCAGCAGGAGCATCCGGCGACATCT
GTGAAGAAATGTTCCGGAAGTAAACCTTTTCCGCTTGAGGTGCGTGTGCA
CAATTGCGTTACTCCACCCTGTCAGATTGTGAAGGGAACGACACAGAAGT
TCGAGATCGATTTCGCCGTGGACAAGTACATCACCCAGCTGACGACCTTG
GTAAAGGCCACCACACTCGGAATCATTACGGTGCCATATGAACTGCCTGC
GGATGTGGCTGCCGTGTGCCCGAATCTCCAGTACGGCGCCTATTGCCCGC
TGTATCCCACCGAGGATGTCTCCTATTTGTTCACCTTTCCCATTGGTGAA
TATCCCGAGATTGGCGTGAAGATCGAGATCTATCTGGTCGATCAGGACAA
TGAGATTGCCACGTGCTTCGTGTGCGATATTAAGGTGGTCAAGGGCAACG
GCGGCAATACGGTCTATGAGCTGGACTATCTCAACGCAAGCTTTCTAGAC
CAT
BO16893.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:44:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 522 | CG12813-PA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:44:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-RA | 661 | CG12813-RA | 3..523 | 15..535 | 2605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:43:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10055494..10055918 | 535..111 | 2125 | 100 | Minus |
| 3R | 32079331 | 3R | 10055984..10056081 | 112..15 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:43:59 has no hits.
BO16893.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:09 Download gff for
BO16893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-RA | 1..522 | 17..538 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:00 Download gff for
BO16893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-RA | 3..530 | 15..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:10 Download gff for
BO16893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 5..523 | 17..537 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:10 Download gff for
BO16893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12813-RA | 3..530 | 15..543 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:52:51 Download gff for
BO16893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2d-RA | 5..523 | 17..537 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:52:51 Download gff for
BO16893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10055491..10055918 | 111..537 | 99 | <- | Minus |
| 3R | 10055986..10056079 | 17..110 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:10 Download gff for
BO16893.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5881213..5881640 | 111..537 | 99 | <- | Minus |
| arm_3R | 5881708..5881801 | 17..110 | 100 | | Minus |
BO16893.pep Sequence
Translation from 16 to 553
> BO16893.pep
MEVKVLVLISLGLLLSLAEAQQEHPATSVKKCSGSKPFPLEVRVHNCVTP
PCQIVKGTTQKFEIDFAVDKYITQLTTLVKATTLGIITVPYELPADVAAV
CPNLQYGAYCPLYPTEDVSYLFTFPIGEYPEIGVKIEIYLVDQDNEIATC
FVCDIKVVKGNGGNTVYELDYLNASFLDH
BO16893.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2d-PA | 173 | CG12813-PA | 1..173 | 1..173 | 907 | 100 | Plus |
| Npc2e-PB | 168 | CG31410-PB | 4..166 | 7..173 | 272 | 38 | Plus |
| Npc2c-PA | 165 | CG3934-PA | 7..160 | 9..159 | 245 | 37.8 | Plus |
