Clone Sequence Records
BO16896.3prime Sequence
527 bp (527 high quality bases) assembled on 2006-10-13
> BO16896.3prime
ATGGTCTAGAAAGCTTGCGAAATCCTCATTATCGCTGTATACAATGCAAT
CAGAATCTGAGCTGGTGGATGAAAAACTCAATGAGCGAACCAGCGAGACC
ATCGAAGAATGTATTGAGGGATTGGGGGACTGGATAGCATTGTACTCGGA
TTCTGAATCCGGATCGTATCCTTCCTCATCGTCCATTTCCTCTTGCGGGT
TCACGAATGAGTTGTCCAAAGGATCCACCTCGTTGGCGGCTTCCATCGTT
GCACCCTGAGTCTCATTGCGCAACTCGATCACTTCTTGGCGAATCTGGTT
CTGCTCCTCCGCAATGGTGGCCACCAGTTGTTCGAGACTGCAGATCTTGG
CCTCATATTCGGTCAGTTTCTTCTTCAGCTGACAGTTTTCGGCCCGACAG
TTGGCCAATTCCAAGCAGGCGCACATGGCGATCTTGACGTCATCCGAGGT
TGCGGACCTGGTAATGTTTAAGCCACTGGAGTTCTTATTATGAACCGGGC
AATTGAGGGACATGTCGACTGATAACT
BO16896.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:44:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14384-PA | 498 | CG14384-RA | 1..495 | 513..19 | 2475 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14384-RB | 1213 | CG14384-RB | 625..1119 | 513..19 | 2475 | 100 | Minus |
CG14384-RA | 707 | CG14384-RA | 119..613 | 513..19 | 2475 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12966032..12966480 | 19..467 | 2230 | 99.8 | Plus |
3R | 32079331 | 3R | 12966553..12966602 | 464..513 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:01:13 has no hits.
BO16896.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:58 Download gff for
BO16896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14384-PA | 1..498 | 15..513 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:13:47 Download gff for
BO16896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14384-RA | 112..617 | 14..522 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:58 Download gff for
BO16896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14384-RA | 112..617 | 14..522 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:58 Download gff for
BO16896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12966028..12966476 | 14..463 | 99 | <- | Plus |
3R | 12966553..12966609 | 464..522 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:13:47 Download gff for
BO16896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8792275..8792331 | 464..522 | 93 | | Plus |
arm_3R | 8791750..8792198 | 14..463 | 99 | <- | Plus |
BO16896.complete Sequence
529 bp assembled on 2008-08-15
GenBank Submission: FJ633973
> BO16896.complete
GAAGTTATCAGTCGACATGTCCCTCAATTGCCCGGTTCATAATAAGAACT
CCAGTGGCTTAAACATTACCAGGTCCGCAACCTCGGATGACGTCAAGATC
GCCATGTGCGCCTGCTTGGAATTGGCCAACTGTCGGGCCGAAAACTGTCA
GCTGAAGAAGAAACTGACCGAATATGAGGCCAAGATCTGCAGTCTCGAAC
AACTGGTGGCCACCATTGCGGAGGAGCAGAACCAGATTCGCCAAGAAGTG
ATCGAGTTGCGCAATGAGACTCAGGGTGCAACGATGGAAGCCGCCAACGA
GGTGGATCCTTTGGACAACTCATTCGTGAACCCGCAAGAGGAAATGGACG
ATGAGGAAGGATACGATCCGGATTCAGAATCCGAGTACAATGCTATCCAG
TCCCCCAATCCCTCAATACATTCTTCGATGGTCTCGCTGGTTCGCTCATT
GAGTTTTTCATCCACCAGCTCAGATTCTGATTGCATTGTATACAGCGATA
ATGAGGATTTCGCAAGCTTTCTAGACCAT
BO16896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14384-RB | 498 | CG14384-PB | 1..495 | 17..511 | 2475 | 100 | Plus |
CG14384-RA | 498 | CG14384-PA | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14384-RB | 1213 | CG14384-RB | 625..1119 | 17..511 | 2475 | 100 | Plus |
CG14384-RA | 707 | CG14384-RA | 119..613 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12966032..12966480 | 511..63 | 2230 | 99.8 | Minus |
3R | 32079331 | 3R | 12966553..12966602 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:58:20 has no hits.
BO16896.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:01 Download gff for
BO16896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14384-RA | 112..617 | 8..516 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:41 Download gff for
BO16896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14384-RA | 119..613 | 17..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:45 Download gff for
BO16896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14384-RA | 119..613 | 17..513 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:24 Download gff for
BO16896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14384-RA | 119..613 | 17..513 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:24 Download gff for
BO16896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12966030..12966476 | 67..513 | 99 | <- | Minus |
3R | 12966553..12966602 | 17..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:41 Download gff for
BO16896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8791752..8792198 | 67..513 | 99 | <- | Minus |
arm_3R | 8792275..8792324 | 17..66 | 100 | | Minus |
BO16896.pep Sequence
Translation from 16 to 529
> BO16896.pep
MSLNCPVHNKNSSGLNITRSATSDDVKIAMCACLELANCRAENCQLKKKL
TEYEAKICSLEQLVATIAEEQNQIRQEVIELRNETQGATMEAANEVDPLD
NSFVNPQEEMDDEEGYDPDSESEYNAIQSPNPSIHSSMVSLVRSLSFSST
SSDSDCIVYSDNEDFASFLDH
BO16896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14384-PB | 165 | CG14384-PB | 1..165 | 1..165 | 847 | 100 | Plus |
CG14384-PA | 165 | CG14384-PA | 1..165 | 1..165 | 847 | 100 | Plus |