Clone BO16896 Report

Search the DGRC for BO16896

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:168
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG14384-RA
Protein status:BO16896.pep: Imported from assembly
Sequenced Size:529

Clone Sequence Records

BO16896.3prime Sequence

527 bp (527 high quality bases) assembled on 2006-10-13

> BO16896.3prime
ATGGTCTAGAAAGCTTGCGAAATCCTCATTATCGCTGTATACAATGCAAT
CAGAATCTGAGCTGGTGGATGAAAAACTCAATGAGCGAACCAGCGAGACC
ATCGAAGAATGTATTGAGGGATTGGGGGACTGGATAGCATTGTACTCGGA
TTCTGAATCCGGATCGTATCCTTCCTCATCGTCCATTTCCTCTTGCGGGT
TCACGAATGAGTTGTCCAAAGGATCCACCTCGTTGGCGGCTTCCATCGTT
GCACCCTGAGTCTCATTGCGCAACTCGATCACTTCTTGGCGAATCTGGTT
CTGCTCCTCCGCAATGGTGGCCACCAGTTGTTCGAGACTGCAGATCTTGG
CCTCATATTCGGTCAGTTTCTTCTTCAGCTGACAGTTTTCGGCCCGACAG
TTGGCCAATTCCAAGCAGGCGCACATGGCGATCTTGACGTCATCCGAGGT
TGCGGACCTGGTAATGTTTAAGCCACTGGAGTTCTTATTATGAACCGGGC
AATTGAGGGACATGTCGACTGATAACT

BO16896.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 16:44:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14384-PA 498 CG14384-RA 1..495 513..19 2475 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:01:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14384-RB 1213 CG14384-RB 625..1119 513..19 2475 100 Minus
CG14384-RA 707 CG14384-RA 119..613 513..19 2475 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12966032..12966480 19..467 2230 99.8 Plus
3R 32079331 3R 12966553..12966602 464..513 250 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:01:13 has no hits.

BO16896.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:58 Download gff for BO16896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14384-PA 1..498 15..513 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:13:47 Download gff for BO16896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14384-RA 112..617 14..522 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:58 Download gff for BO16896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14384-RA 112..617 14..522 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:14:58 Download gff for BO16896.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12966028..12966476 14..463 99 <- Plus
3R 12966553..12966609 464..522 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:13:47 Download gff for BO16896.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8792275..8792331 464..522 93   Plus
arm_3R 8791750..8792198 14..463 99 <- Plus

BO16896.complete Sequence

529 bp assembled on 2008-08-15

GenBank Submission: FJ633973

> BO16896.complete
GAAGTTATCAGTCGACATGTCCCTCAATTGCCCGGTTCATAATAAGAACT
CCAGTGGCTTAAACATTACCAGGTCCGCAACCTCGGATGACGTCAAGATC
GCCATGTGCGCCTGCTTGGAATTGGCCAACTGTCGGGCCGAAAACTGTCA
GCTGAAGAAGAAACTGACCGAATATGAGGCCAAGATCTGCAGTCTCGAAC
AACTGGTGGCCACCATTGCGGAGGAGCAGAACCAGATTCGCCAAGAAGTG
ATCGAGTTGCGCAATGAGACTCAGGGTGCAACGATGGAAGCCGCCAACGA
GGTGGATCCTTTGGACAACTCATTCGTGAACCCGCAAGAGGAAATGGACG
ATGAGGAAGGATACGATCCGGATTCAGAATCCGAGTACAATGCTATCCAG
TCCCCCAATCCCTCAATACATTCTTCGATGGTCTCGCTGGTTCGCTCATT
GAGTTTTTCATCCACCAGCTCAGATTCTGATTGCATTGTATACAGCGATA
ATGAGGATTTCGCAAGCTTTCTAGACCAT

BO16896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:58:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG14384-RB 498 CG14384-PB 1..495 17..511 2475 100 Plus
CG14384-RA 498 CG14384-PA 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG14384-RB 1213 CG14384-RB 625..1119 17..511 2475 100 Plus
CG14384-RA 707 CG14384-RA 119..613 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:58:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12966032..12966480 511..63 2230 99.8 Minus
3R 32079331 3R 12966553..12966602 66..17 250 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:58:20 has no hits.

BO16896.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:47:01 Download gff for BO16896.complete
Subject Subject Range Query Range Percent Splice Strand
CG14384-RA 112..617 8..516 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:54:41 Download gff for BO16896.complete
Subject Subject Range Query Range Percent Splice Strand
CG14384-RA 119..613 17..513 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:45 Download gff for BO16896.complete
Subject Subject Range Query Range Percent Splice Strand
CG14384-RA 119..613 17..513 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:08:24 Download gff for BO16896.complete
Subject Subject Range Query Range Percent Splice Strand
CG14384-RA 119..613 17..513 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:08:24 Download gff for BO16896.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12966030..12966476 67..513 99 <- Minus
3R 12966553..12966602 17..66 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:54:41 Download gff for BO16896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8791752..8792198 67..513 99 <- Minus
arm_3R 8792275..8792324 17..66 100   Minus

BO16896.pep Sequence

Translation from 16 to 529

> BO16896.pep
MSLNCPVHNKNSSGLNITRSATSDDVKIAMCACLELANCRAENCQLKKKL
TEYEAKICSLEQLVATIAEEQNQIRQEVIELRNETQGATMEAANEVDPLD
NSFVNPQEEMDDEEGYDPDSESEYNAIQSPNPSIHSSMVSLVRSLSFSST
SSDSDCIVYSDNEDFASFLDH

BO16896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14384-PB 165 CG14384-PB 1..165 1..165 847 100 Plus
CG14384-PA 165 CG14384-PA 1..165 1..165 847 100 Plus