Clone Sequence Records
BO16901.5prime Sequence
272 bp (272 high quality bases) assembled on 2006-10-13
> BO16901.5prime
GAAGTTATCAGTCGACATGTTTACTTTGTGGACACTGATTGAATCTTCAC
TCCTGTGCCTGAATGCGGTGTGCATTCTGCACGAGGAACGCTTTCTGGCC
AAGTTTGGCTGGGGACGACAGGCGGGCCAGCAGGACTTTGGAGCACCTAC
GGCCAAGGATCAGGTGCTAAACCTCATTCGTTCCATACGCACAGTGGCCA
AAATTCCCCTGATATTCCTTAACATAATTGCGATTATATTTAAACTATTA
CTTGGTGCAAGCTTTCTAGACC
BO16901.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-PA | 243 | CG32069-RA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:25:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-RA | 356 | CG32069-RA | 72..311 | 17..256 | 1200 | 100 | Plus |
Blos2-RA | 645 | CG14145-RA | 606..645 | 256..217 | 200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:25:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11062291..11062389 | 203..105 | 495 | 100 | Minus |
3L | 28110227 | 3L | 11062456..11062543 | 104..17 | 440 | 100 | Minus |
3L | 28110227 | 3L | 11062176..11062228 | 256..204 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:25:04 has no hits.
BO16901.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:00 Download gff for
BO16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-PA | 1..243 | 17..259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:27 Download gff for
BO16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..311 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:16 Download gff for
BO16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..311 | 17..256 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:16 Download gff for
BO16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11062456..11062543 | 17..104 | 100 | | Minus |
3L | 11062176..11062228 | 204..256 | 100 | <- | Minus |
3L | 11062291..11062389 | 105..203 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:27 Download gff for
BO16901.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11055276..11055328 | 204..256 | 100 | <- | Minus |
arm_3L | 11055391..11055489 | 105..203 | 100 | <- | Minus |
arm_3L | 11055556..11055643 | 17..104 | 100 | | Minus |
BO16901.3prime Sequence
272 bp (272 high quality bases) assembled on 2006-10-13
> BO16901.3prime
ATGGTCTAGAAAGCTTGCACCAAGTAATAGTTTAAATATAATCGCAATTA
TGTTAAGGAATATCAGGGGAATTTTGGCCACTGTGCGTATGGAACGAATG
AGGTTTAGCACCTGATCCTTGGCCGTAGGTGCTCCAAAGTCCTGCTGGCC
CGCCTGTCGTCCCCAGCCAAACTTGGCCAGAAAGCGTTCCTCGTGCAGAA
TGCACACCGCATTCAGGCACAGGAGTGAAGATTCAATCAGTGTCCACAAA
GTAAACATGTCGACTGATAACT
BO16901.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-PA | 243 | CG32069-RA | 1..240 | 258..19 | 1200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-RA | 356 | CG32069-RA | 72..311 | 258..19 | 1200 | 100 | Minus |
Blos2-RA | 645 | CG14145-RA | 606..645 | 19..58 | 200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11062291..11062389 | 72..170 | 495 | 100 | Plus |
3L | 28110227 | 3L | 11062456..11062543 | 171..258 | 440 | 100 | Plus |
3L | 28110227 | 3L | 11062176..11062228 | 19..71 | 265 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:07 has no hits.
BO16901.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:58:59 Download gff for
BO16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-PA | 1..243 | 16..258 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:10 Download gff for
BO16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..311 | 19..258 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:50 Download gff for
BO16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..311 | 19..258 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:50 Download gff for
BO16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11062176..11062228 | 19..71 | 100 | <- | Plus |
3L | 11062291..11062389 | 72..170 | 100 | <- | Plus |
3L | 11062456..11062543 | 171..258 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:10 Download gff for
BO16901.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11055276..11055328 | 19..71 | 100 | <- | Plus |
arm_3L | 11055391..11055489 | 72..170 | 100 | <- | Plus |
arm_3L | 11055556..11055643 | 171..258 | 100 | | Plus |
BO16901.complete Sequence
274 bp assembled on 2006-10-11
GenBank Submission: FJ633974
> BO16901.complete
GAAGTTATCAGTCGACATGTTTACTTTGTGGACACTGATTGAATCTTCAC
TCCTGTGCCTGAATGCGGTGTGCATTCTGCACGAGGAACGCTTTCTGGCC
AAGTTTGGCTGGGGACGACAGGCGGGCCAGCAGGACTTTGGAGCACCTAC
GGCCAAGGATCAGGTGCTAAACCTCATTCGTTCCATACGCACAGTGGCCA
AAATTCCCCTGATATTCCTTAACATAATTGCGATTATATTTAAACTATTA
CTTGGTGCAAGCTTTCTAGACCAT
BO16901.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-RA | 243 | CG32069-PA | 1..240 | 17..256 | 1200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:24:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-RA | 356 | CG32069-RA | 72..311 | 17..256 | 1200 | 100 | Plus |
Blos2-RA | 645 | CG14145-RA | 606..645 | 256..217 | 200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11062291..11062389 | 203..105 | 495 | 100 | Minus |
3L | 28110227 | 3L | 11062456..11062543 | 104..17 | 440 | 100 | Minus |
3L | 28110227 | 3L | 11062176..11062228 | 256..204 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:24:41 has no hits.
BO16901.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:47 Download gff for
BO16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 1..243 | 17..259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:21 Download gff for
BO16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 72..311 | 17..256 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:44 Download gff for
BO16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 78..311 | 23..258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:47 Download gff for
BO16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 1..243 | 17..259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:53 Download gff for
BO16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32069-RA | 78..311 | 23..258 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:53 Download gff for
BO16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11062172..11062228 | 204..258 | 96 | <- | Minus |
3L | 11062291..11062389 | 105..203 | 100 | <- | Minus |
3L | 11062456..11062537 | 23..104 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:44 Download gff for
BO16901.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11055272..11055328 | 204..258 | 96 | <- | Minus |
arm_3L | 11055391..11055489 | 105..203 | 100 | <- | Minus |
arm_3L | 11055556..11055637 | 23..104 | 100 | | Minus |
BO16901.pep Sequence
Translation from 16 to 274
> BO16901.pep
MFTLWTLIESSLLCLNAVCILHEERFLAKFGWGRQAGQQDFGAPTAKDQV
LNLIRSIRTVAKIPLIFLNIIAIIFKLLLGASFLDH
BO16901.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32069-PA | 80 | CG32069-PA | 1..80 | 1..80 | 406 | 100 | Plus |