Clone Sequence Records
BO16903.3prime Sequence
296 bp (296 high quality bases) assembled on 2006-10-13
> BO16903.3prime
ATGGTCTAGAAAGCTTGCGTCCTTGCAGGCCTTTTCGCATTCACTCTTGG
TAGAGAACTGATTGGAGTTTCCACCGCAGCCACCGAAAATGAACTCGGTG
CAGGCGTTTTTGGAGGCATCATAGGTCCAGGCCGGCATAAAAGCCATGCA
GGCAGCTCCATCCTGCGCCATGCCCACCATCGAAGAGGGCTGCTGGCACA
TCTCCGGCTTGGCATGCACCCATAAACGACTGCCGGACAGACTCAGCAAA
AAGGCGATGGCGACAAAGCCGATATACTTCATGTCGACTGATAACT
BO16903.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-PA | 267 | CG3513-RA | 1..264 | 282..19 | 1320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-RA | 423 | CG3513-RA | 15..278 | 282..19 | 1320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3692844..3693029 | 19..204 | 930 | 100 | Plus |
2L | 23513712 | 2L | 3693090..3693168 | 204..282 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:12:19 has no hits.
BO16903.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:02 Download gff for
BO16903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-PA | 1..267 | 15..282 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:34:58 Download gff for
BO16903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 2..283 | 14..296 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:17 Download gff for
BO16903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 2..283 | 14..296 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:17 Download gff for
BO16903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3693090..3693181 | 204..296 | 94 | | Plus |
2L | 3692845..3693028 | 20..203 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:34:58 Download gff for
BO16903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3692845..3693028 | 20..203 | 100 | <- | Plus |
arm_2L | 3693090..3693181 | 204..296 | 94 | | Plus |
BO16903.5prime Sequence
296 bp (296 high quality bases) assembled on 2006-10-13
> BO16903.5prime
GAAGTTATCAGTCGACATGAAGTATATCGGCTTTGTCGCCATCGCCTTTT
TGCTGAGTCTGTCCGGCAGTCGTTTATGGGTGCATGCCAAGCCGGAGATG
TGCCAGCAGCCCTCTTCGATGGTGGGCATGGCGCAGGATGGAGCTGCCTG
CATGGCTTTTATGCCGGCCTGGACCTATGATGCCTCCAAAAACGCCTGCA
CCGAGTTCATTTTCGGTGGCTGCGGTGGAAACTCCAATCAGTTCTCTACC
AAGAGTGAATGCGAAAAGGCCTGCAAGGACGCAAGCTTTCTAGACC
BO16903.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-PA | 267 | CG3513-RA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:25:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-RA | 423 | CG3513-RA | 15..278 | 17..280 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:25:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3692844..3693029 | 280..95 | 930 | 100 | Minus |
2L | 23513712 | 2L | 3693090..3693168 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:25:17 has no hits.
BO16903.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:03 Download gff for
BO16903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-PA | 1..267 | 17..284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:41:28 Download gff for
BO16903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..283 | 2..285 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:26:18 Download gff for
BO16903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..283 | 2..285 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:26:18 Download gff for
BO16903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3692845..3693028 | 96..279 | 100 | <- | Minus |
2L | 3693090..3693183 | 1..95 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:41:28 Download gff for
BO16903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3693090..3693183 | 1..95 | 94 | | Minus |
arm_2L | 3692845..3693028 | 96..279 | 100 | <- | Minus |
BO16903.complete Sequence
298 bp assembled on 2006-10-11
GenBank Submission: FJ633975
> BO16903.complete
GAAGTTATCAGTCGACATGAAGTATATCGGCTTTGTCGCCATCGCCTTTT
TGCTGAGTCTGTCCGGCAGTCGTTTATGGGTGCATGCCAAGCCGGAGATG
TGCCAGCAGCCCTCTTCGATGGTGGGCATGGCGCAGGATGGAGCTGCCTG
CATGGCTTTTATGCCGGCCTGGACCTATGATGCCTCCAAAAACGCCTGCA
CCGAGTTCATTTTCGGTGGCTGCGGTGGAAACTCCAATCAGTTCTCTACC
AAGAGTGAATGCGAAAAGGCCTGCAAGGACGCAAGCTTTCTAGACCAT
BO16903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-RA | 267 | CG3513-PA | 1..264 | 17..280 | 1320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-RA | 423 | CG3513-RA | 15..278 | 17..280 | 1320 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:23:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3692844..3693029 | 280..95 | 930 | 100 | Minus |
2L | 23513712 | 2L | 3693090..3693168 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:23:16 has no hits.
BO16903.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:53 Download gff for
BO16903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..267 | 17..284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:31 Download gff for
BO16903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..267 | 17..284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:52:06 Download gff for
BO16903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 15..278 | 17..282 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:53 Download gff for
BO16903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 1..267 | 17..284 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:10 Download gff for
BO16903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3513-RA | 15..278 | 17..282 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:10 Download gff for
BO16903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3692842..3693028 | 96..282 | 98 | <- | Minus |
2L | 3693090..3693168 | 17..95 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:52:06 Download gff for
BO16903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3692842..3693028 | 96..282 | 98 | <- | Minus |
arm_2L | 3693090..3693168 | 17..95 | 100 | | Minus |
BO16903.pep Sequence
Translation from 16 to 298
> BO16903.pep
MKYIGFVAIAFLLSLSGSRLWVHAKPEMCQQPSSMVGMAQDGAACMAFMP
AWTYDASKNACTEFIFGGCGGNSNQFSTKSECEKACKDASFLDH
BO16903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3513-PA | 88 | CG3513-PA | 1..88 | 1..88 | 479 | 100 | Plus |
CG16713-PA | 82 | CG16713-PA | 8..80 | 6..86 | 168 | 40.2 | Plus |
CG16712-PB | 82 | CG16712-PB | 1..82 | 1..88 | 158 | 37.5 | Plus |
CG16712-PA | 82 | CG16712-PA | 1..82 | 1..88 | 158 | 37.5 | Plus |
CG2816-PB | 84 | CG2816-PB | 40..83 | 45..88 | 141 | 50 | Plus |