Clone Sequence Records
BO16905.3prime Sequence
284 bp (284 high quality bases) assembled on 2006-10-13
> BO16905.3prime
ATGGTCTAGAAAGCTTGCGGTGGAGGATGTGCTGGGCTTGGTTGTGGGCT
CTGACTTGTCGGCGTCATCGTCCAGGTTCTTGCCGCTGGCCAGGAGAACA
GCTGGAACGCTGCTGGAGGTCGCCGGCAGGACTTCGCTGTCGGAAGGGGG
TGTAGGCGTCCGGGGAGTAAGCAATTGTTGGCGGTTCCTCAGGCGCTCCA
TCTTAGCCTGCTCGTACTCCTTGAGATCGGACAGCTTCAGCTGGATGGTC
TGCAGTTCGCGGCGTCGCATGTCGACTGATAACT
BO16905.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17343-PA | 255 | CG17343-RA | 1..252 | 270..19 | 1260 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:51:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10702-RD | 4041 | CG10702-RD | 3629..3880 | 19..270 | 1260 | 100 | Plus |
CG17343-RA | 571 | CG17343-RA | 65..316 | 270..19 | 1260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19064993..19065244 | 270..19 | 1260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:51:50 has no hits.
BO16905.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:05 Download gff for
BO16905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17343-PA | 1..255 | 18..270 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:41 Download gff for
BO16905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10702-RD | 3629..3880 | 19..270 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:24 Download gff for
BO16905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17343-RA | 65..316 | 19..270 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:24 Download gff for
BO16905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19064993..19065244 | 19..270 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:41 Download gff for
BO16905.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19064993..19065244 | 19..270 | 100 | | Minus |
BO16905.5prime Sequence
284 bp (284 high quality bases) assembled on 2006-10-13
> BO16905.5prime
GAAGTTATCAGTCGACATGCGACGCCGCGAACTGCAGACCATCCAGCTGA
AGCTGTCCGATCTCAAGGAGTACGAGCAGGCTAAGATGGAGCGCCTGAGG
AACCGCCAACAATTGCTTACTCCCCGGACGCCTACACCCCCTTCCGACAG
CGAAGTCCTGCCGGCGACCTCCAGCAGCGTTCCAGCTGTTCTCCTGGCCA
GCGGCAAGAACCTGGACGATGACGCCGACAAGTCAGAGCCCACAACCAAG
CCCAGCACATCCTCCACCGCAAGCTTTCTAGACC
BO16905.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17343-PA | 255 | CG17343-RA | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10702-RD | 4041 | CG10702-RD | 3629..3880 | 268..17 | 1260 | 100 | Minus |
CG17343-RA | 571 | CG17343-RA | 65..316 | 17..268 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:59:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19064993..19065244 | 17..268 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:59:17 has no hits.
BO16905.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:06 Download gff for
BO16905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17343-PA | 1..255 | 17..269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:42 Download gff for
BO16905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10702-RD | 3629..3880 | 17..268 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:40 Download gff for
BO16905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17343-RA | 65..316 | 17..268 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:40 Download gff for
BO16905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19064993..19065244 | 17..268 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:42 Download gff for
BO16905.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19064993..19065244 | 17..268 | 100 | | Plus |
BO16905.complete Sequence
286 bp assembled on 2006-10-11
GenBank Submission: FJ633976
> BO16905.complete
GAAGTTATCAGTCGACATGCGACGCCGCGAACTGCAGACCATCCAGCTGA
AGCTGTCCGATCTCAAGGAGTACGAGCAGGCTAAGATGGAGCGCCTGAGG
AACCGCCAACAATTGCTTACTCCCCGGACGCCTACACCCCCTTCCGACAG
CGAAGTCCTGCCGGCGACCTCCAGCAGCGTTCCAGCTGTTCTCCTGGCCA
GCGGCAAGAACCTGGACGATGACGCCGACAAGTCAGAGCCCACAACCAAG
CCCAGCACATCCTCCACCGCAAGCTTTCTAGACCAT
BO16905.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17343-RA | 255 | CG17343-PA | 1..252 | 17..268 | 1260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10702-RD | 4041 | CG10702-RD | 3629..3880 | 268..17 | 1260 | 100 | Minus |
CG17343-RA | 571 | CG17343-RA | 65..316 | 17..268 | 1260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19064993..19065244 | 17..268 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:02:11 has no hits.
BO16905.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:04:49 Download gff for
BO16905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17343-RA | 1..255 | 17..269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:19:24 Download gff for
BO16905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17343-RA | 1..255 | 17..269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:04 Download gff for
BO16905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10702-RD | 3627..3880 | 17..270 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:04:49 Download gff for
BO16905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17343-RA | 1..255 | 17..269 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:22 Download gff for
BO16905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17343-RA | 65..316 | 17..270 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:22 Download gff for
BO16905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19064993..19065244 | 17..270 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:04 Download gff for
BO16905.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19064993..19065244 | 17..270 | 99 | | Plus |
BO16905.pep Sequence
Translation from 16 to 286
> BO16905.pep
MRRRELQTIQLKLSDLKEYEQAKMERLRNRQQLLTPRTPTPPSDSEVLPA
TSSSVPAVLLASGKNLDDDADKSEPTTKPSTSSTASFLDH
BO16905.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17343-PA | 84 | CG17343-PA | 1..84 | 1..84 | 416 | 100 | Plus |