Clone BO16906 Report

Search the DGRC for BO16906

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG11755-RA
Protein status:BO16906.pep: validated full length
Sequenced Size:496

Clone Sequence Records

BO16906.5prime Sequence

494 bp (466 high quality bases) assembled on 2006-10-13

> BO16906.5prime
GAAGTTATCAGTCGACATGGATCCCGATGACGACCTCGTCCTGGAGAATG
AGGCAGAGGAAATTGAACGGTTACAGCTTCCCGAGGAGCTTAAAAAGCCC
ATTGATCCCGAGGAAGAGGATGAACGAGTAGCACGCATCGAATTCAATTG
TTCTGGCTGTGAAATGCACGAGATGGTCCATTATTTTGGACGGAAACCGC
CCTTTGCTCTAGGAGTCATATACCCAGAGGACAACTACGTGATGCGAGAT
CCTTTCCAACCACCTCCACCTCGTTGGCAGTCAAAGCCGGAATACTATAT
CGCAATGGGGACTAAGTGCTCCATCTGCTCCAAGACGGTGTGCAAGGATC
CTGGCTGCAGTTTCTACTATACAGCCTCTTTTTGCTTGCCTTGTGGCAAG
GAAGAATTAAAAAACTGGCCACCTGAGGCTCAAGCTCGAATAAGAAAACA
AATGTCTGTCAGTCAAGGCAGGCAAACAGCAAGCTTTCTAGACC

BO16906.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-PA 465 CG11755-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-RB 816 CG11755-RB 143..607 14..478 2325 100 Plus
CG11755-RA 813 CG11755-RA 140..604 14..478 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8678282..8678746 14..478 2325 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:10:17 has no hits.

BO16906.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:07 Download gff for BO16906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-PA 1..465 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:19 Download gff for BO16906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 134..610 7..486 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:17:26 Download gff for BO16906.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 134..610 7..486 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:17:26 Download gff for BO16906.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8678276..8678752 7..486 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:19 Download gff for BO16906.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4503998..4504474 7..486 98   Plus

BO16906.complete Sequence

496 bp assembled on 2006-10-11

GenBank Submission: FJ633977

> BO16906.complete
GAAGTTATCAGTCGACATGGATCCCGATGACGACCTCGTCCTGGAGAATG
AGGCAGAGGAAATTGAACGGTTACAGCTTCCCGAGGAGCTTAAAAAGCCC
ATTGATCCCGAGGAAGAGGATGAACGAGTAGCACGCATCGAATTCAATTG
TTCTGGCTGTGAAATGCACGAGATGGTCCATTATTTTGGACGGAAACCGC
CCTTTGCTCTAGGAGTCATATACCCAGAGGACAACTACGTGATGCGAGAT
CCTTTCCAACCACCTCCACCTCGTTGGCAGTCAAAGCCGGAATACTATAT
CGCAATGGGGACTAAGTGCTCCATCTGCTCCAAGACGGTGTGCAAGGATC
CTGGCTGCAGTTTCTACTATACAGCCTCTTTTTGCTTGCCTTGTGGCAAG
GAAGAATTAAAAAACTGGCCACCTGAGGCTCAAGCTCGAATAAGAAAACA
AATGTCTGTCAGTCAAGGCAGGCAAACAGCAAGCTTTCTAGACCAT

BO16906.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-RB 465 CG11755-PB 1..462 17..478 2310 100 Plus
CG11755-RA 465 CG11755-PA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-RB 816 CG11755-RB 143..607 14..478 2325 100 Plus
CG11755-RA 813 CG11755-RA 140..604 14..478 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8678282..8678746 14..478 2325 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:32:27 has no hits.

BO16906.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:39 Download gff for BO16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:16 Download gff for BO16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:11 Download gff for BO16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 143..604 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:40 Download gff for BO16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 1..465 17..482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:44 Download gff for BO16906.complete
Subject Subject Range Query Range Percent Splice Strand
CG11755-RA 143..604 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:44 Download gff for BO16906.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8678285..8678746 17..480 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:11 Download gff for BO16906.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4504007..4504468 17..480 99   Plus

BO16906.pep Sequence

Translation from 16 to 496

> BO16906.pep
MDPDDDLVLENEAEEIERLQLPEELKKPIDPEEEDERVARIEFNCSGCEM
HEMVHYFGRKPPFALGVIYPEDNYVMRDPFQPPPPRWQSKPEYYIAMGTK
CSICSKTVCKDPGCSFYYTASFCLPCGKEELKNWPPEAQARIRKQMSVSQ
GRQTASFLDH

BO16906.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG11755-PB 154 CG11755-PB 1..154 1..154 857 100 Plus
CG11755-PA 154 CG11755-PA 1..154 1..154 857 100 Plus