Clone Sequence Records
BO16906.5prime Sequence
494 bp (466 high quality bases) assembled on 2006-10-13
> BO16906.5prime
GAAGTTATCAGTCGACATGGATCCCGATGACGACCTCGTCCTGGAGAATG
AGGCAGAGGAAATTGAACGGTTACAGCTTCCCGAGGAGCTTAAAAAGCCC
ATTGATCCCGAGGAAGAGGATGAACGAGTAGCACGCATCGAATTCAATTG
TTCTGGCTGTGAAATGCACGAGATGGTCCATTATTTTGGACGGAAACCGC
CCTTTGCTCTAGGAGTCATATACCCAGAGGACAACTACGTGATGCGAGAT
CCTTTCCAACCACCTCCACCTCGTTGGCAGTCAAAGCCGGAATACTATAT
CGCAATGGGGACTAAGTGCTCCATCTGCTCCAAGACGGTGTGCAAGGATC
CTGGCTGCAGTTTCTACTATACAGCCTCTTTTTGCTTGCCTTGTGGCAAG
GAAGAATTAAAAAACTGGCCACCTGAGGCTCAAGCTCGAATAAGAAAACA
AATGTCTGTCAGTCAAGGCAGGCAAACAGCAAGCTTTCTAGACC
BO16906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11755-PA | 465 | CG11755-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11755-RB | 816 | CG11755-RB | 143..607 | 14..478 | 2325 | 100 | Plus |
CG11755-RA | 813 | CG11755-RA | 140..604 | 14..478 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8678282..8678746 | 14..478 | 2325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:10:17 has no hits.
BO16906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:07 Download gff for
BO16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11755-PA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:19 Download gff for
BO16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11755-RA | 134..610 | 7..486 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:17:26 Download gff for
BO16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11755-RA | 134..610 | 7..486 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:17:26 Download gff for
BO16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8678276..8678752 | 7..486 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:19 Download gff for
BO16906.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4503998..4504474 | 7..486 | 98 | | Plus |
BO16906.complete Sequence
496 bp assembled on 2006-10-11
GenBank Submission: FJ633977
> BO16906.complete
GAAGTTATCAGTCGACATGGATCCCGATGACGACCTCGTCCTGGAGAATG
AGGCAGAGGAAATTGAACGGTTACAGCTTCCCGAGGAGCTTAAAAAGCCC
ATTGATCCCGAGGAAGAGGATGAACGAGTAGCACGCATCGAATTCAATTG
TTCTGGCTGTGAAATGCACGAGATGGTCCATTATTTTGGACGGAAACCGC
CCTTTGCTCTAGGAGTCATATACCCAGAGGACAACTACGTGATGCGAGAT
CCTTTCCAACCACCTCCACCTCGTTGGCAGTCAAAGCCGGAATACTATAT
CGCAATGGGGACTAAGTGCTCCATCTGCTCCAAGACGGTGTGCAAGGATC
CTGGCTGCAGTTTCTACTATACAGCCTCTTTTTGCTTGCCTTGTGGCAAG
GAAGAATTAAAAAACTGGCCACCTGAGGCTCAAGCTCGAATAAGAAAACA
AATGTCTGTCAGTCAAGGCAGGCAAACAGCAAGCTTTCTAGACCAT
BO16906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:32:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11755-RB | 465 | CG11755-PB | 1..462 | 17..478 | 2310 | 100 | Plus |
CG11755-RA | 465 | CG11755-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:32:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11755-RB | 816 | CG11755-RB | 143..607 | 14..478 | 2325 | 100 | Plus |
CG11755-RA | 813 | CG11755-RA | 140..604 | 14..478 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 8678282..8678746 | 14..478 | 2325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:32:27 has no hits.
BO16906.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:39 Download gff for
BO16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11755-RA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:16 Download gff for
BO16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11755-RA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:31:11 Download gff for
BO16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11755-RA | 143..604 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:40 Download gff for
BO16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11755-RA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:02:44 Download gff for
BO16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11755-RA | 143..604 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:02:44 Download gff for
BO16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 8678285..8678746 | 17..480 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:31:11 Download gff for
BO16906.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 4504007..4504468 | 17..480 | 99 | | Plus |
BO16906.pep Sequence
Translation from 16 to 496
> BO16906.pep
MDPDDDLVLENEAEEIERLQLPEELKKPIDPEEEDERVARIEFNCSGCEM
HEMVHYFGRKPPFALGVIYPEDNYVMRDPFQPPPPRWQSKPEYYIAMGTK
CSICSKTVCKDPGCSFYYTASFCLPCGKEELKNWPPEAQARIRKQMSVSQ
GRQTASFLDH
BO16906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11755-PB | 154 | CG11755-PB | 1..154 | 1..154 | 857 | 100 | Plus |
CG11755-PA | 154 | CG11755-PA | 1..154 | 1..154 | 857 | 100 | Plus |