Clone Sequence Records
BO16909.3prime Sequence
449 bp (449 high quality bases) assembled on 2006-10-13
> BO16909.3prime
ATGGTCTAGAAAGCTTGCGCGTTCCAATTTCGGCACGGTAGCTGAACTAG
CACCTCCCTCTTTCGACTTGTGCTCCTTGGAGTCCTCCACCTTGCCCACA
AACTTCTCCACCGTGCTGACGACCCTTTCGACATTGCCGCCCACGAACTG
GATTAGTGTCACTCGGTTTTTGATGATCAGAAATGTGGGCATGCTGTTGA
CTTCGTACTGAACGGCCAGATCTTCGTTCTCATCAACGTCAATCTTAAGG
ACCAACATCCGTCCGAAGTAATCCGATGCCAGTTGCTCCAAGCGGGGACC
AATCATCGCGCAAGGACCACACCAGGTGGCGAAGAACTCGACAAGTACGT
ATTTGTTGGTTCCCGCATCATCGATGAGCTTATCAAAGTAACTCTTCGAA
TCCACAATGATGACCTTCTTCTGCATGGCAGCCATGTCGACTGATAACT
BO16909.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-PA | 420 | CG13473-RA | 1..417 | 435..19 | 2085 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-RA | 584 | CG13473-RA | 81..497 | 435..19 | 2085 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14728840..14729256 | 435..19 | 2085 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:59:46 has no hits.
BO16909.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:11 Download gff for
BO16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-PA | 1..420 | 15..435 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:45 Download gff for
BO16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 79..506 | 10..439 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:42 Download gff for
BO16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 79..506 | 10..439 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:42 Download gff for
BO16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14728838..14729265 | 10..439 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:45 Download gff for
BO16909.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14721938..14722365 | 10..439 | 98 | | Minus |
BO16909.5prime Sequence
449 bp (449 high quality bases) assembled on 2006-10-13
> BO16909.5prime
GAAGTTATCAGTCGACATGGCTGCCATGCAGAAGAAGGTCATCATTGTGG
ATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGAACCAACAAA
TACGTACTTGTCGAGTTCTTCGCCACCTGGTGTGGTCCTTGCGCGATGAT
TGGTCCCCGCTTGGAGCAACTGGCATCGGATTACTTCGGACGGATGTTGG
TCCTTAAGATTGACGTTGATGAGAACGAAGATCTGGCCGTTCAGTACGAA
GTCAACAGCATGCCCACATTTCTGATCATCAAAAACCGAGTGACACTAAT
CCAGTTCGTGGGCGGCAATGTCGAAAGGGTCGTCAGCACGGTGGAGAAGT
TTGTGGGCAAGGTGGAGGACTCCAAGGAGCACAAGTCGAAAGAGGGAGGT
GCTAGTTCAGCTACCGTGCCGAAATTGGAACGCGCAAGCTTTCTAGACC
BO16909.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-PA | 420 | CG13473-RA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-RA | 584 | CG13473-RA | 81..497 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14728840..14729256 | 17..433 | 2085 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:12:37 has no hits.
BO16909.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:11 Download gff for
BO16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-PA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:02 Download gff for
BO16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 79..506 | 13..442 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:22 Download gff for
BO16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 79..506 | 13..442 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:22 Download gff for
BO16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14728838..14729265 | 13..442 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:02 Download gff for
BO16909.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14721938..14722365 | 13..442 | 98 | | Plus |
BO16909.complete Sequence
451 bp assembled on 2006-10-11
GenBank Submission: FJ633978
> BO16909.complete
GAAGTTATCAGTCGACATGGCTGCCATGCAGAAGAAGGTCATCATTGTGG
ATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGAACCAACAAA
TACGTACTTGTCGAGTTCTTCGCCACCTGGTGTGGTCCTTGCGCGATGAT
TGGTCCCCGCTTGGAGCAACTGGCATCGGATTACTTCGGACGGATGTTGG
TCCTTAAGATTGACGTTGATGAGAACGAAGATCTGGCCGTTCAGTACGAA
GTCAACAGCATGCCCACATTTCTGATCATCAAAAACCGAGTGACACTAAT
CCAGTTCGTGGGCGGCAATGTCGAAAGGGTCGTCAGCACGGTGGAGAAGT
TTGTGGGCAAGGTGGAGGACTCCAAGGAGCACAAGTCGAAAGAGGGAGGT
GCTAGTTCAGCTACCGTGCCGAAATTGGAACGCGCAAGCTTTCTAGACCA
T
BO16909.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-RA | 420 | CG13473-PA | 1..417 | 17..433 | 2085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-RA | 584 | CG13473-RA | 81..497 | 17..433 | 2085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 14728840..14729256 | 17..433 | 2085 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:37:17 has no hits.
BO16909.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:10 Download gff for
BO16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:31 Download gff for
BO16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:37 Download gff for
BO16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 81..497 | 17..435 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:10 Download gff for
BO16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 1..420 | 17..437 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:52 Download gff for
BO16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13473-RA | 81..497 | 17..435 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:52 Download gff for
BO16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 14728840..14729256 | 17..435 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:37 Download gff for
BO16909.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 14721940..14722356 | 17..435 | 99 | | Plus |
BO16909.pep Sequence
Translation from 16 to 451
> BO16909.pep
MAAMQKKVIIVDSKSYFDKLIDDAGTNKYVLVEFFATWCGPCAMIGPRLE
QLASDYFGRMLVLKIDVDENEDLAVQYEVNSMPTFLIIKNRVTLIQFVGG
NVERVVSTVEKFVGKVEDSKEHKSKEGGASSATVPKLERASFLDH
BO16909.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13473-PA | 139 | CG13473-PA | 1..139 | 1..139 | 705 | 100 | Plus |
TrxT-PB | 157 | CG3315-PB | 20..111 | 27..118 | 253 | 48.9 | Plus |
TrxT-PA | 157 | CG3315-PA | 20..111 | 27..118 | 253 | 48.9 | Plus |
Trx-2-PA | 106 | CG31884-PA | 19..103 | 26..110 | 239 | 45.9 | Plus |
Trx-2-PB | 106 | CG31884-PB | 19..103 | 26..110 | 239 | 45.9 | Plus |