Clone BO16909 Report

Search the DGRC for BO16909

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG13473-RA
Protein status:BO16909.pep: validated full length
Sequenced Size:451

Clone Sequence Records

BO16909.3prime Sequence

449 bp (449 high quality bases) assembled on 2006-10-13

> BO16909.3prime
ATGGTCTAGAAAGCTTGCGCGTTCCAATTTCGGCACGGTAGCTGAACTAG
CACCTCCCTCTTTCGACTTGTGCTCCTTGGAGTCCTCCACCTTGCCCACA
AACTTCTCCACCGTGCTGACGACCCTTTCGACATTGCCGCCCACGAACTG
GATTAGTGTCACTCGGTTTTTGATGATCAGAAATGTGGGCATGCTGTTGA
CTTCGTACTGAACGGCCAGATCTTCGTTCTCATCAACGTCAATCTTAAGG
ACCAACATCCGTCCGAAGTAATCCGATGCCAGTTGCTCCAAGCGGGGACC
AATCATCGCGCAAGGACCACACCAGGTGGCGAAGAACTCGACAAGTACGT
ATTTGTTGGTTCCCGCATCATCGATGAGCTTATCAAAGTAACTCTTCGAA
TCCACAATGATGACCTTCTTCTGCATGGCAGCCATGTCGACTGATAACT

BO16909.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-PA 420 CG13473-RA 1..417 435..19 2085 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-RA 584 CG13473-RA 81..497 435..19 2085 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14728840..14729256 435..19 2085 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:59:46 has no hits.

BO16909.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:11 Download gff for BO16909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-PA 1..420 15..435 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:45 Download gff for BO16909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 79..506 10..439 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:43:42 Download gff for BO16909.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 79..506 10..439 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:43:42 Download gff for BO16909.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14728838..14729265 10..439 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:45 Download gff for BO16909.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14721938..14722365 10..439 98   Minus

BO16909.5prime Sequence

449 bp (449 high quality bases) assembled on 2006-10-13

> BO16909.5prime
GAAGTTATCAGTCGACATGGCTGCCATGCAGAAGAAGGTCATCATTGTGG
ATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGAACCAACAAA
TACGTACTTGTCGAGTTCTTCGCCACCTGGTGTGGTCCTTGCGCGATGAT
TGGTCCCCGCTTGGAGCAACTGGCATCGGATTACTTCGGACGGATGTTGG
TCCTTAAGATTGACGTTGATGAGAACGAAGATCTGGCCGTTCAGTACGAA
GTCAACAGCATGCCCACATTTCTGATCATCAAAAACCGAGTGACACTAAT
CCAGTTCGTGGGCGGCAATGTCGAAAGGGTCGTCAGCACGGTGGAGAAGT
TTGTGGGCAAGGTGGAGGACTCCAAGGAGCACAAGTCGAAAGAGGGAGGT
GCTAGTTCAGCTACCGTGCCGAAATTGGAACGCGCAAGCTTTCTAGACC

BO16909.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-PA 420 CG13473-RA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-RA 584 CG13473-RA 81..497 17..433 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14728840..14729256 17..433 2085 100 Plus
Blast to na_te.dros performed on 2015-01-31 10:12:37 has no hits.

BO16909.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:11 Download gff for BO16909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-PA 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:35:02 Download gff for BO16909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 79..506 13..442 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:44:22 Download gff for BO16909.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 79..506 13..442 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:44:22 Download gff for BO16909.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14728838..14729265 13..442 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:35:02 Download gff for BO16909.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14721938..14722365 13..442 98   Plus

BO16909.complete Sequence

451 bp assembled on 2006-10-11

GenBank Submission: FJ633978

> BO16909.complete
GAAGTTATCAGTCGACATGGCTGCCATGCAGAAGAAGGTCATCATTGTGG
ATTCGAAGAGTTACTTTGATAAGCTCATCGATGATGCGGGAACCAACAAA
TACGTACTTGTCGAGTTCTTCGCCACCTGGTGTGGTCCTTGCGCGATGAT
TGGTCCCCGCTTGGAGCAACTGGCATCGGATTACTTCGGACGGATGTTGG
TCCTTAAGATTGACGTTGATGAGAACGAAGATCTGGCCGTTCAGTACGAA
GTCAACAGCATGCCCACATTTCTGATCATCAAAAACCGAGTGACACTAAT
CCAGTTCGTGGGCGGCAATGTCGAAAGGGTCGTCAGCACGGTGGAGAAGT
TTGTGGGCAAGGTGGAGGACTCCAAGGAGCACAAGTCGAAAGAGGGAGGT
GCTAGTTCAGCTACCGTGCCGAAATTGGAACGCGCAAGCTTTCTAGACCA
T

BO16909.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:37:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-RA 420 CG13473-PA 1..417 17..433 2085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:37:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-RA 584 CG13473-RA 81..497 17..433 2085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:37:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14728840..14729256 17..433 2085 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:37:17 has no hits.

BO16909.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:10 Download gff for BO16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:21:31 Download gff for BO16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:48:37 Download gff for BO16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 81..497 17..435 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:10 Download gff for BO16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 1..420 17..437 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:49:52 Download gff for BO16909.complete
Subject Subject Range Query Range Percent Splice Strand
CG13473-RA 81..497 17..435 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:49:52 Download gff for BO16909.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14728840..14729256 17..435 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:48:37 Download gff for BO16909.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14721940..14722356 17..435 99   Plus

BO16909.pep Sequence

Translation from 16 to 451

> BO16909.pep
MAAMQKKVIIVDSKSYFDKLIDDAGTNKYVLVEFFATWCGPCAMIGPRLE
QLASDYFGRMLVLKIDVDENEDLAVQYEVNSMPTFLIIKNRVTLIQFVGG
NVERVVSTVEKFVGKVEDSKEHKSKEGGASSATVPKLERASFLDH

BO16909.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13473-PA 139 CG13473-PA 1..139 1..139 705 100 Plus
TrxT-PB 157 CG3315-PB 20..111 27..118 253 48.9 Plus
TrxT-PA 157 CG3315-PA 20..111 27..118 253 48.9 Plus
Trx-2-PA 106 CG31884-PA 19..103 26..110 239 45.9 Plus
Trx-2-PB 106 CG31884-PB 19..103 26..110 239 45.9 Plus