Clone Sequence Records
BO16912.3prime Sequence
504 bp (501 high quality bases) assembled on 2006-10-13
> BO16912.3prime
ATGGTCTAGAAAGCTTGCTTTTGGCACCCGACGCATCTTATCAGCGATGG
CGTCCCTGAAGTCTCGAAAATCGCTGCTGCCCTCGATTTCGTTGCGACAT
TTGCTCTGGATGCGATAGAGCCCGCTGCTGATGTCCGTGCGATCGGCGCT
GAGCATGCGCCTGGAGAGATCCTGCTCCAGGTCGTAGGGCAGGCCCAGAT
CGACCAGTTCGTCCACCTCGTCCTGGGTGAAGGTGCGCTGGTGCTCAGCG
AGAAACTCGGCGCACTTCTCGTAGATGTCCAAGTACTGCTCGGCCTCGTC
CTTGTCGCCGGACCGCCTCGTCTCCATGAACTTGCGCAGCAGTCTGGTGG
CCTCCGCATCCAGCAGCGTCTCGTGCACACTGTTCGACAGAACATAGATC
CTCCGCACCTCGGCGACAGTCATGTTACTGCATCCGCAGAAGCACCTTAT
CAGCTGTAGGGTCTTGTTCTTGCTCGAACTGCTGGCCATGTCGACTGATA
ACTT
BO16912.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12883-PA | 474 | CG12883-RA | 1..471 | 489..19 | 2355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12883-RA | 976 | CG12883-RA | 115..590 | 494..19 | 2365 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:10:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27679499..27679950 | 470..19 | 2260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:10:20 has no hits.
BO16912.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:15 Download gff for
BO16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-PA | 1..474 | 16..489 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:02:21 Download gff for
BO16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 112..590 | 19..497 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:17:33 Download gff for
BO16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 112..590 | 19..497 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 11:17:33 Download gff for
BO16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27679402..27679430 | 469..497 | 93 | -> | Minus |
| 3R | 27679501..27679950 | 19..468 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:02:21 Download gff for
BO16912.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23505124..23505152 | 469..497 | 93 | -> | Minus |
| arm_3R | 23505223..23505672 | 19..468 | 100 | | Minus |
BO16912.5prime Sequence
482 bp (480 high quality bases) assembled on 2006-10-13
> BO16912.5prime
GAAGTTATCAGTCGACATGGCCAGCAGTTCGAGCAAGAACAAGACCCTAC
AGCTGATAAGGTGCTTCTGCGGATGCAGTAACATGACTGTCGCCGAGGTG
CGGAGGATCTATGTTCTGTCGAACAGTGTGCACGAGACGCTGCTGGATGC
GGAGGCCACCAGACTGCTGCGCAAGTTCATGGAGACGAGGCGGTCCGGCG
ACAAGGACGAGGCCGAGCAGTACTTGGACATCTACGAGAAGTGCGCCGAG
TTTCTCGCTGAGCACCAGCGCACCTTCACCCAGGACGAGGTGGACGAACT
GGTCGATCTGGGCCTGCCCTACGACCTGGAGCAGGATCTCTCCAGGCGCA
TGCTCAGCGCCGATCGCACGGACATCAGCAGCGGGCTCTATCGCATCCAG
AGCAAATGTCGCAACGAAATCGAGGGCAGCAGCGATTTTCGAGACTTCAG
GGACGCCATCGCTGATAAGATGCGTCGGGTGC
BO16912.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12883-PA | 474 | CG12883-RA | 1..466 | 17..482 | 2330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:47:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12883-RA | 976 | CG12883-RA | 115..585 | 12..482 | 2340 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27679499..27679945 | 36..482 | 2235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:47:11 has no hits.
BO16912.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:16 Download gff for
BO16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-PA | 1..466 | 17..482 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:42:43 Download gff for
BO16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 112..585 | 9..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:00:18 Download gff for
BO16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 112..585 | 9..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:00:18 Download gff for
BO16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27679402..27679430 | 9..37 | 93 | -> | Plus |
| 3R | 27679501..27679945 | 38..482 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:42:43 Download gff for
BO16912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23505124..23505152 | 9..37 | 93 | -> | Plus |
| arm_3R | 23505223..23505667 | 38..482 | 100 | | Plus |
BO16912.complete Sequence
505 bp assembled on 2006-10-11
GenBank Submission: FJ633979
> BO16912.complete
GAAGTTATCAGTCGACATGGCCAGCAGTTCGAGCAAGAACAAGACCCTAC
AGCTGATAAGGTGCTTCTGCGGATGCAGTAACATGACTGTCGCCGAGGTG
CGGAGGATCTATGTTCTGTCGAACAGTGTGCACGAGACGCTGCTGGATGC
GGAGGCCACCAGACTGCTGCGCAAGTTCATGGAGACGAGGCGGTCCGGCG
ACAAGGACGAGGCCGAGCAGTACTTGGACATCTACGAGAAGTGCGCCGAG
TTTCTCGCTGAGCACCAGCGCACCTTCACCCAGGACGAGGTGGACGAACT
GGTCGATCTGGGCCTGCCCTACGACCTGGAGCAGGATCTCTCCAGGCGCA
TGCTCAGCGCCGATCGCACGGACATCAGCAGCGGGCTCTATCGCATCCAG
AGCAAATGTCGCAACGAAATCGAGGGCAGCAGCGATTTTCGAGACTTCAG
GGACGCCATCGCTGATAAGATGCGTCGGGTGCCAAAAGCAAGCTTTCTAG
ACCAT
BO16912.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12883-RA | 474 | CG12883-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12883-RA | 976 | CG12883-RA | 115..590 | 12..487 | 2365 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27679499..27679950 | 36..487 | 2260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:32:30 has no hits.
BO16912.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:55 Download gff for
BO16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 1..474 | 17..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:37 Download gff for
BO16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 112..590 | 9..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:42:40 Download gff for
BO16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 120..586 | 17..483 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:55 Download gff for
BO16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 112..590 | 9..487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:21 Download gff for
BO16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12883-RA | 120..586 | 17..483 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:21 Download gff for
BO16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27679410..27679430 | 17..37 | 100 | -> | Plus |
| 3R | 27679501..27679946 | 38..483 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:42:40 Download gff for
BO16912.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23505132..23505152 | 17..37 | 100 | -> | Plus |
| arm_3R | 23505223..23505668 | 38..483 | 100 | | Plus |
BO16912.pep Sequence
Translation from 16 to 505
> BO16912.pep
MASSSSKNKTLQLIRCFCGCSNMTVAEVRRIYVLSNSVHETLLDAEATRL
LRKFMETRRSGDKDEAEQYLDIYEKCAEFLAEHQRTFTQDEVDELVDLGL
PYDLEQDLSRRMLSADRTDISSGLYRIQSKCRNEIEGSSDFRDFRDAIAD
KMRRVPKASFLDH
BO16912.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12883-PA | 157 | CG12883-PA | 1..157 | 1..157 | 800 | 100 | Plus |
| CG14610-PB | 147 | CG14610-PB | 1..136 | 1..150 | 223 | 40 | Plus |
