Clone Sequence Records
BO16913.3prime Sequence
509 bp (450 high quality bases) assembled on 2006-10-13
> BO16913.3prime
ATGGTCTAGAAAGCTTGCCGCTTTTATAACATTAAGTTCTTTGATTTTCA
TAAGGACGCACTTCTTAATGCCCGCACTCAATCCTTTCTTAGTCCTTTCT
TGCAACCCCGTTCTGGGTGCAGGTTTGGTATCCTCCTTGGCGTTGCTACG
ACGTTTGATTATTATGGCCCCGTTTTTAGATTTCTCTTGGTATTTGGCCA
GCTCCTTTTCATCCTTCACGATGACAACCGTAATCGGTGGCAATTGAATT
TCCGGCATGCTGATGTTGTTCGTGATCGTGTTAATATTACTGATGGTTTG
TTTGGGATTTACAAATCCCTTTTCTGTTTCTGATTTACAAAGCTTGACCA
GCGTGTTCAGGAATTGCCTCTTTTCGTCCTCTTTAGTGTTTGCCTTCTTA
TTTGAATATGTATTGGGTTTCGCGTGTGATGGTTCCGGTTCCGGTTCCGG
TGCAGAGCTATCATCGTTGTTACCATTGAACATTTCGTTTATCATGTCGA
CTGATAACT
BO16913.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11112-PA | 480 | CG11112-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
| CG11112-PB | 1230 | CG11112-RB | 1..420 | 495..76 | 2100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:35:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11112-RC | 676 | CG11112-RC | 159..635 | 495..19 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7400965..7401441 | 495..19 | 2385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:35:31 has no hits.
BO16913.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:17 Download gff for
BO16913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-PA | 1..480 | 15..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:23:13 Download gff for
BO16913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 154..638 | 15..504 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:13:15 Download gff for
BO16913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 154..638 | 15..504 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:13:15 Download gff for
BO16913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7400960..7401444 | 15..504 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:23:13 Download gff for
BO16913.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3288465..3288949 | 15..504 | 98 | | Minus |
BO16913.5prime Sequence
509 bp (509 high quality bases) assembled on 2006-10-13
> BO16913.5prime
GAAGTTATCAGTCGACATGATAAACGAAATGTTCAATGGTAACAACGATG
ATAGCTCTGCACCGGAACCGGAACCGGAACCATCACACGCGAAACCCAAT
ACATATTCAAATAAGAAGGCAAACACTAAAGAGGACGAAAAGAGGCAATT
CCTGAACACGCTGGTCAAGCTTTGTAAATCAGAAACAGAAAAGGGATTTG
TAAATCCCAAACAAACCATCAGTAATATTAACACGATCACGAACAACATC
AGCATGCCGGAAATTCAATTGCCACCGATTACGGTTGTCATCGTGAAGGA
TGAAAAGGAGCTGGCCAAATACCAAGAGAAATCTAAAAACGGGGCCATAA
TAATCAAACGTCGTAGCAACGCCAAGGAGGATACCAAACCTGCACCCAGA
ACGGGGTTGCAAGAAAGGACTAAGAAAGGATTGAGTGCGGGCATTAAGAA
GTGCGTCCTTATGAAAATCAAAGAACTTAATGTTATAAAAGCGGCAAGCT
TTCTAGACC
BO16913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11112-PA | 480 | CG11112-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
| CG11112-PB | 1230 | CG11112-RB | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11112-RC | 676 | CG11112-RC | 159..635 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:10:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7400965..7401441 | 17..493 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:10:14 has no hits.
BO16913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:17 Download gff for
BO16913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-PA | 1..480 | 17..497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:12 Download gff for
BO16913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 154..638 | 8..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:14 Download gff for
BO16913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 154..638 | 8..497 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:14 Download gff for
BO16913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7400960..7401444 | 8..497 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:12 Download gff for
BO16913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3288465..3288949 | 8..497 | 98 | | Plus |
BO16913.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ633980
> BO16913.complete
GAAGTTATCAGTCGACATGATAAACGAAATGTTCAATGGTAACAACGATG
ATAGCTCTGCACCGGAACCGGAACCGGAACCATCACACGCGAAACCCAAT
ACATATTCAAATAAGAAGGCAAACACTAAAGAGGACGAAAAGAGGCAATT
CCTGAACACGCTGGTCAAGCTTTGTAAATCAGAAACAGAAAAGGGATTTG
TAAATCCCAAACAAACCATCAGTAATATTAACACGATCACGAACAACATC
AGCATGCCGGAAATTCAATTGCCACCGATTACGGTTGTCATCGTGAAGGA
TGAAAAGGAGCTGGCCAAATACCAAGAGAAATCTAAAAACGGGGCCATAA
TAATCAAACGTCGTAGCAACGCCAAGGAGGATACCAAACCTGCACCCAGA
ACGGGGTTGCAAGAAAGGACTAAGAAAGGATTGAGTGCGGGCATTAAGAA
GTGCGTCCTTATGAAAATCAAAGAACTTAATGTTATAAAAGCGGCAAGCT
TTCTAGACCAT
BO16913.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11112-RC | 594 | CG11112-PC | 115..591 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11112-RC | 676 | CG11112-RC | 159..635 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7400965..7401441 | 17..493 | 2385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:08:01 has no hits.
BO16913.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:05 Download gff for
BO16913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 110..594 | 8..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:53 Download gff for
BO16913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 110..594 | 8..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:47:53 Download gff for
BO16913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 159..635 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:06 Download gff for
BO16913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 110..594 | 8..497 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:13 Download gff for
BO16913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11112-RC | 159..635 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:13 Download gff for
BO16913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7400965..7401441 | 17..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:47:53 Download gff for
BO16913.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3288470..3288946 | 17..495 | 99 | | Plus |
BO16913.pep Sequence
Translation from 16 to 511
> BO16913.pep
MINEMFNGNNDDSSAPEPEPEPSHAKPNTYSNKKANTKEDEKRQFLNTLV
KLCKSETEKGFVNPKQTISNINTITNNISMPEIQLPPITVVIVKDEKELA
KYQEKSKNGAIIIKRRSNAKEDTKPAPRTGLQERTKKGLSAGIKKCVLMK
IKELNVIKAASFLDH
BO16913.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11112-PC | 197 | CG11112-PC | 39..197 | 1..159 | 813 | 100 | Plus |
