Clone Sequence Records
BO16914.5prime Sequence
470 bp (470 high quality bases) assembled on 2006-10-13
> BO16914.5prime
GAAGTTATCAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCT
TCCTGGTGCTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAG
CTGCTCACGCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCC
CCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGAC
GCAGTACATCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGT
CTGTTTCAGATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGG
AATCTGCAACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATG
ACTCGCGATGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGG
CCCGGATGGATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCG
TTGCGCAAGCTTTCTAGACC
BO16914.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-PA | 441 | CG11159-RA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-RA | 656 | CG11159-RA | 117..555 | 16..454 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20656338..20656493 | 171..16 | 780 | 100 | Minus |
2R | 25286936 | 2R | 20655857..20655989 | 454..322 | 665 | 100 | Minus |
2R | 25286936 | 2R | 20656183..20656271 | 259..171 | 445 | 100 | Minus |
2R | 25286936 | 2R | 20656067..20656133 | 323..257 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:52:57 has no hits.
BO16914.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:19 Download gff for
BO16914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-PA | 1..441 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:52 Download gff for
BO16914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 109..563 | 9..462 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:31 Download gff for
BO16914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 109..563 | 9..462 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:31 Download gff for
BO16914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20655849..20655987 | 324..462 | 97 | <- | Minus |
2R | 20656067..20656130 | 260..323 | 100 | <- | Minus |
2R | 20656183..20656271 | 171..259 | 100 | <- | Minus |
2R | 20656339..20656496 | 9..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:52 Download gff for
BO16914.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16543354..16543492 | 324..462 | 97 | <- | Minus |
arm_2R | 16543572..16543635 | 260..323 | 100 | <- | Minus |
arm_2R | 16543688..16543776 | 171..259 | 100 | <- | Minus |
arm_2R | 16543844..16544001 | 9..170 | 97 | | Minus |
BO16914.3prime Sequence
470 bp (470 high quality bases) assembled on 2006-10-13
> BO16914.3prime
ATGGTCTAGAAAGCTTGCGCAACGCGAGACATCGGGCAGCGTGCGCCCAC
GACATTTGCTCATCCATCCGGGCCAGGCCTGGAATCCGTGGCGGTTGAAA
ATCTGCATGGCACATCGCGAGTCATCCGAGATCTCATCGTTAAGGAACTC
TTCGCATTTGATGTTGCAGATTCCGCCACGACGACCTTTGCGACACCAAT
TTTTGCTGTTAATCTGAAACAGACCGTAGCTGACGCTCTGATTGGGCAGC
TGCATAGATTTGGATGTACTGCGTCCACTCTCCGCTTCCACCAGGCAAAC
CCAATTTGATAGATAACTGCGGGGAAAGTCATGGCGCAACAGCTCCTTGG
CCAACTGACAACGCGTGAGCAGCTTAGACTCGGTCTCCCATTGCGAAAGC
AGGAGAAGATTGAGCACCAGGAAGAGCGCACCACCTTTGGGCAAGTGACT
GGCCATGTCGACTGATAACT
BO16914.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-PA | 441 | CG11159-RA | 1..438 | 456..19 | 2190 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-RA | 656 | CG11159-RA | 117..555 | 457..19 | 2195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20656338..20656493 | 302..457 | 780 | 100 | Plus |
2R | 25286936 | 2R | 20655857..20655989 | 19..151 | 665 | 100 | Plus |
2R | 25286936 | 2R | 20656183..20656271 | 214..302 | 445 | 100 | Plus |
2R | 25286936 | 2R | 20656067..20656133 | 150..216 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:47:41 has no hits.
BO16914.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:17 Download gff for
BO16914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-PA | 1..441 | 18..456 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:23 Download gff for
BO16914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 109..563 | 11..464 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:57 Download gff for
BO16914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 109..563 | 11..464 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:57 Download gff for
BO16914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20656183..20656271 | 214..302 | 100 | <- | Plus |
2R | 20656339..20656496 | 303..464 | 97 | | Plus |
2R | 20655849..20655987 | 11..149 | 97 | <- | Plus |
2R | 20656067..20656130 | 150..213 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:23 Download gff for
BO16914.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16543354..16543492 | 11..149 | 97 | <- | Plus |
arm_2R | 16543572..16543635 | 150..213 | 100 | <- | Plus |
arm_2R | 16543688..16543776 | 214..302 | 100 | <- | Plus |
arm_2R | 16543844..16544001 | 303..464 | 97 | | Plus |
BO16914.complete Sequence
472 bp assembled on 2006-10-11
GenBank Submission: FJ633981
> BO16914.complete
GAAGTTATCAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCT
TCCTGGTGCTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAG
CTGCTCACGCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCC
CCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGAC
GCAGTACATCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGT
CTGTTTCAGATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGG
AATCTGCAACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATG
ACTCGCGATGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGG
CCCGGATGGATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCG
TTGCGCAAGCTTTCTAGACCAT
BO16914.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-RA | 441 | CG11159-PA | 1..438 | 17..454 | 2190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-RA | 656 | CG11159-RA | 117..555 | 16..454 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20656338..20656493 | 171..16 | 780 | 100 | Minus |
2R | 25286936 | 2R | 20655857..20655989 | 454..322 | 665 | 100 | Minus |
2R | 25286936 | 2R | 20656183..20656271 | 259..171 | 445 | 100 | Minus |
2R | 25286936 | 2R | 20656067..20656133 | 323..257 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:53:30 has no hits.
BO16914.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:50 Download gff for
BO16914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 1..441 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:01 Download gff for
BO16914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 1..441 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:46 Download gff for
BO16914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 118..555 | 17..456 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:50 Download gff for
BO16914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 1..441 | 17..455 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:51 Download gff for
BO16914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11159-RA | 118..555 | 17..456 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:51 Download gff for
BO16914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20655855..20655987 | 324..456 | 98 | <- | Minus |
2R | 20656067..20656130 | 260..323 | 100 | <- | Minus |
2R | 20656183..20656271 | 171..259 | 100 | <- | Minus |
2R | 20656339..20656492 | 17..170 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:46 Download gff for
BO16914.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16543360..16543492 | 324..456 | 98 | <- | Minus |
arm_2R | 16543572..16543635 | 260..323 | 100 | <- | Minus |
arm_2R | 16543688..16543776 | 171..259 | 100 | <- | Minus |
arm_2R | 16543844..16543997 | 17..170 | 100 | | Minus |
BO16914.pep Sequence
Translation from 16 to 472
> BO16914.pep
MASHLPKGGALFLVLNLLLLSQWETESKLLTRCQLAKELLRHDFPRSYLS
NWVCLVEAESGRSTSKSMQLPNQSVSYGLFQINSKNWCRKGRRGGICNIK
CEEFLNDEISDDSRCAMQIFNRHGFQAWPGWMSKCRGRTLPDVSRCASFL
DH
BO16914.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11159-PA | 146 | CG11159-PA | 1..146 | 1..146 | 793 | 100 | Plus |
CG16799-PB | 179 | CG16799-PB | 27..158 | 14..143 | 332 | 49.2 | Plus |
CG16799-PA | 179 | CG16799-PA | 27..158 | 14..143 | 332 | 49.2 | Plus |
CG16756-PA | 152 | CG16756-PA | 5..146 | 6..143 | 291 | 44.8 | Plus |
LysP-PA | 141 | CG9116-PA | 4..140 | 12..146 | 218 | 35.3 | Plus |