Clone BO16914 Report

Search the DGRC for BO16914

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:169
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG11159-RA
Protein status:BO16914.pep: validated full length
Sequenced Size:472

Clone Sequence Records

BO16914.5prime Sequence

470 bp (470 high quality bases) assembled on 2006-10-13

> BO16914.5prime
GAAGTTATCAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCT
TCCTGGTGCTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAG
CTGCTCACGCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCC
CCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGAC
GCAGTACATCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGT
CTGTTTCAGATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGG
AATCTGCAACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATG
ACTCGCGATGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGG
CCCGGATGGATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCG
TTGCGCAAGCTTTCTAGACC

BO16914.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-PA 441 CG11159-RA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:53:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-RA 656 CG11159-RA 117..555 16..454 2195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20656338..20656493 171..16 780 100 Minus
2R 25286936 2R 20655857..20655989 454..322 665 100 Minus
2R 25286936 2R 20656183..20656271 259..171 445 100 Minus
2R 25286936 2R 20656067..20656133 323..257 335 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:52:57 has no hits.

BO16914.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:19 Download gff for BO16914.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-PA 1..441 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:20:52 Download gff for BO16914.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 109..563 9..462 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:05:31 Download gff for BO16914.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 109..563 9..462 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:05:31 Download gff for BO16914.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20655849..20655987 324..462 97 <- Minus
2R 20656067..20656130 260..323 100 <- Minus
2R 20656183..20656271 171..259 100 <- Minus
2R 20656339..20656496 9..170 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:20:52 Download gff for BO16914.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16543354..16543492 324..462 97 <- Minus
arm_2R 16543572..16543635 260..323 100 <- Minus
arm_2R 16543688..16543776 171..259 100 <- Minus
arm_2R 16543844..16544001 9..170 97   Minus

BO16914.3prime Sequence

470 bp (470 high quality bases) assembled on 2006-10-13

> BO16914.3prime
ATGGTCTAGAAAGCTTGCGCAACGCGAGACATCGGGCAGCGTGCGCCCAC
GACATTTGCTCATCCATCCGGGCCAGGCCTGGAATCCGTGGCGGTTGAAA
ATCTGCATGGCACATCGCGAGTCATCCGAGATCTCATCGTTAAGGAACTC
TTCGCATTTGATGTTGCAGATTCCGCCACGACGACCTTTGCGACACCAAT
TTTTGCTGTTAATCTGAAACAGACCGTAGCTGACGCTCTGATTGGGCAGC
TGCATAGATTTGGATGTACTGCGTCCACTCTCCGCTTCCACCAGGCAAAC
CCAATTTGATAGATAACTGCGGGGAAAGTCATGGCGCAACAGCTCCTTGG
CCAACTGACAACGCGTGAGCAGCTTAGACTCGGTCTCCCATTGCGAAAGC
AGGAGAAGATTGAGCACCAGGAAGAGCGCACCACCTTTGGGCAAGTGACT
GGCCATGTCGACTGATAACT

BO16914.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:11:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-PA 441 CG11159-RA 1..438 456..19 2190 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-RA 656 CG11159-RA 117..555 457..19 2195 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:47:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20656338..20656493 302..457 780 100 Plus
2R 25286936 2R 20655857..20655989 19..151 665 100 Plus
2R 25286936 2R 20656183..20656271 214..302 445 100 Plus
2R 25286936 2R 20656067..20656133 150..216 335 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:47:41 has no hits.

BO16914.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:59:17 Download gff for BO16914.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-PA 1..441 18..456 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:42:23 Download gff for BO16914.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 109..563 11..464 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:46:57 Download gff for BO16914.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 109..563 11..464 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:57 Download gff for BO16914.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20656183..20656271 214..302 100 <- Plus
2R 20656339..20656496 303..464 97   Plus
2R 20655849..20655987 11..149 97 <- Plus
2R 20656067..20656130 150..213 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:42:23 Download gff for BO16914.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16543354..16543492 11..149 97 <- Plus
arm_2R 16543572..16543635 150..213 100 <- Plus
arm_2R 16543688..16543776 214..302 100 <- Plus
arm_2R 16543844..16544001 303..464 97   Plus

BO16914.complete Sequence

472 bp assembled on 2006-10-11

GenBank Submission: FJ633981

> BO16914.complete
GAAGTTATCAGTCGACATGGCCAGTCACTTGCCCAAAGGTGGTGCGCTCT
TCCTGGTGCTCAATCTTCTCCTGCTTTCGCAATGGGAGACCGAGTCTAAG
CTGCTCACGCGTTGTCAGTTGGCCAAGGAGCTGTTGCGCCATGACTTTCC
CCGCAGTTATCTATCAAATTGGGTTTGCCTGGTGGAAGCGGAGAGTGGAC
GCAGTACATCCAAATCTATGCAGCTGCCCAATCAGAGCGTCAGCTACGGT
CTGTTTCAGATTAACAGCAAAAATTGGTGTCGCAAAGGTCGTCGTGGCGG
AATCTGCAACATCAAATGCGAAGAGTTCCTTAACGATGAGATCTCGGATG
ACTCGCGATGTGCCATGCAGATTTTCAACCGCCACGGATTCCAGGCCTGG
CCCGGATGGATGAGCAAATGTCGTGGGCGCACGCTGCCCGATGTCTCGCG
TTGCGCAAGCTTTCTAGACCAT

BO16914.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-RA 441 CG11159-PA 1..438 17..454 2190 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:53:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-RA 656 CG11159-RA 117..555 16..454 2195 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20656338..20656493 171..16 780 100 Minus
2R 25286936 2R 20655857..20655989 454..322 665 100 Minus
2R 25286936 2R 20656183..20656271 259..171 445 100 Minus
2R 25286936 2R 20656067..20656133 323..257 335 100 Minus
Blast to na_te.dros performed on 2014-11-27 12:53:30 has no hits.

BO16914.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:25:50 Download gff for BO16914.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 1..441 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:46:01 Download gff for BO16914.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 1..441 17..455 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:46:46 Download gff for BO16914.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 118..555 17..456 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:25:50 Download gff for BO16914.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 1..441 17..455 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:51 Download gff for BO16914.complete
Subject Subject Range Query Range Percent Splice Strand
CG11159-RA 118..555 17..456 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:51 Download gff for BO16914.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20655855..20655987 324..456 98 <- Minus
2R 20656067..20656130 260..323 100 <- Minus
2R 20656183..20656271 171..259 100 <- Minus
2R 20656339..20656492 17..170 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:46:46 Download gff for BO16914.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16543360..16543492 324..456 98 <- Minus
arm_2R 16543572..16543635 260..323 100 <- Minus
arm_2R 16543688..16543776 171..259 100 <- Minus
arm_2R 16543844..16543997 17..170 100   Minus

BO16914.pep Sequence

Translation from 16 to 472

> BO16914.pep
MASHLPKGGALFLVLNLLLLSQWETESKLLTRCQLAKELLRHDFPRSYLS
NWVCLVEAESGRSTSKSMQLPNQSVSYGLFQINSKNWCRKGRRGGICNIK
CEEFLNDEISDDSRCAMQIFNRHGFQAWPGWMSKCRGRTLPDVSRCASFL
DH

BO16914.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:56:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG11159-PA 146 CG11159-PA 1..146 1..146 793 100 Plus
CG16799-PB 179 CG16799-PB 27..158 14..143 332 49.2 Plus
CG16799-PA 179 CG16799-PA 27..158 14..143 332 49.2 Plus
CG16756-PA 152 CG16756-PA 5..146 6..143 291 44.8 Plus
LysP-PA 141 CG9116-PA 4..140 12..146 218 35.3 Plus